vOTU vOTU-043608

vOTU: vOTU-043608

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-043608
Number of genomes	5
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-01321 → vGENUS-05232 → vSUBGEN-11213 → vOTU-043608
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83
Host range breadth	Genus
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-0025153
Biosample ID	SAMEA4766161
Genome length (bp)	42,380 bps
CheckV completeness	100.00% (Complete)
CDS count	58
CDS density	92.85%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83	Total connections	66	Host agreement	86.36
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83	Total connections	4	Host agreement	75

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-0025153_5	NF040595	N/A	N/A	N/A	N/A
PHROG	UHGV-0025153_8	phrog_7566	91.4	5.9e-27	N/A	unknown function
UniRef90	UHGV-0025153_8	UniRef90_A0A8D9UHC0	104.0	1.85e-27	Recombination enhancement function protein nuclease	N/A
eggNOG-mapper	UHGV-0025153_8	1007096.BAGW01000031_gene114	107.0	3.43e-29	N/A	N/A
eggNOG-mapper	UHGV-0025153_9	1519439.JPJG01000060_gene1868	77.8	1.86e-18	N/A	N/A
KOfam	UHGV-0025153_17	K22300	65.3	1.3e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0025153_17	phrog_4	48.8	0.00000000000018	transcriptional repressor	transcription regulation
UniRef90	UHGV-0025153_17	UniRef90_A0A1C6CFH8	130.0	1.42e-36	Putative zinc finger/helix-turn-helix protein, YgiT family	N/A
eggNOG-mapper	UHGV-0025153_17	903814.ELI_1263	119.0	3.39e-33	Helix-turn-helix domain	N/A
Pfam	UHGV-0025153_17	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0025153_17	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0025153_17	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0025153_19	UniRef90_A0A810PZB1	130.0	8.22e-35	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0025153_19	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0025153_19	PF12844,MF_00535,TIGR03070,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0025153_20	K06400	328.0	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0025153_20	phrog_95	325.1	0	integrase	integration and excision
UniRef90	UHGV-0025153_20	UniRef90_G4KP73	674.0	0	Putative site-specific recombinase	N/A
eggNOG-mapper	UHGV-0025153_20	693746.OBV_21880	674.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0025153_20	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0025153_20	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0025153_20	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0025153_20	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0025153_20	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-0025153_21	UniRef90_A0A843GWV6	108.0	7.92e-29	Rubrerythrin domain-containing protein	N/A
UniRef90	UHGV-0025153_23	UniRef90_A0A1Y3RJS2	89.7	1.06e-18	Sigma70_r4_2 domain-containing protein	N/A
UniRef90	UHGV-0025153_24	UniRef90_A0A8D9PDQ3	84.3	9.7e-20	ECF sigma factor	N/A
KOfam	UHGV-0025153_25	K01448	67.4	2.2e-19	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0025153_25	phrog_435	88.8	8.3e-26	endolysin	lysis
UniRef90	UHGV-0025153_25	UniRef90_A0A810PUG7	360.0	0	SPOR domain-containing protein	N/A
eggNOG-mapper	UHGV-0025153_25	697281.Mahau_0053	129.0	1.09e-33	n-acetylmuramoyl-l-alanine amidase	N/A
Pfam	UHGV-0025153_25	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-0025153_25	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0025153_25	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0025153_25	PF01520,PF01471,MF_00562,TIGR02883,TIGR03979,COG0860,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-0025153_26	phrog_443	56.4	8.7e-16	holin	lysis
UniRef90	UHGV-0025153_26	UniRef90_UPI0009B98E42	97.8	2.33e-25	holin	N/A
eggNOG-mapper	UHGV-0025153_26	626523.GCWU000342_01012	95.9	4.14e-25	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0025153_26	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0025153_26	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0025153_28	phrog_13589	185.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0025153_28	428125.CLOLEP_01434	236.0	0	N/A	N/A
PHROG	UHGV-0025153_29	phrog_31538	49.0	0.00000000000013	N/A	unknown function
eggNOG-mapper	UHGV-0025153_29	428125.CLOLEP_01433	63.5	0.00000000000605	N/A	N/A
PHROG	UHGV-0025153_30	phrog_15594	74.4	1.2e-21	N/A	unknown function
eggNOG-mapper	UHGV-0025153_30	1118055.CAGU01000013_gene763	58.2	0.00000000104	N/A	N/A
structural_annotation	UHGV-0025153_30	PF16640,TIGR04488	N/A	N/A	N/A	N/A
PHROG	UHGV-0025153_31	phrog_1863	70.5	1.3e-20	N/A	unknown function
eggNOG-mapper	UHGV-0025153_31	718252.FP2_04900	111.0	3.21e-31	N/A	N/A
PHROG	UHGV-0025153_32	phrog_22978	493.3	0	N/A	unknown function
UniRef90	UHGV-0025153_32	UniRef90_A0A348SZV7	333.0	0	MuF_C domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-0025153_32	1410650.JHWL01000003_gene2814	546.0	0	N/A	N/A
Pfam	UHGV-0025153_32	PF18819	N/A	N/A	Phage MuF-C-terminal domain	MuF_C
Pfam	UHGV-0025153_32	PF18814	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
PHROG	UHGV-0025153_33	phrog_2649	63.8	4.4e-18	endolysin	lysis
UniRef90	UHGV-0025153_33	UniRef90_A0A810PWK0	232.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0025153_33	1203606.HMPREF1526_02741	83.2	0.00000000000000458	N/A	N/A
Pfam	UHGV-0025153_33	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
structural_annotation	UHGV-0025153_33	PF01471,TIGR02869,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-0025153_34	phrog_372	271.8	0	tail protein	tail
UniRef90	UHGV-0025153_34	UniRef90_A0A3E3E6C0	247.0	0	Pilus assembly protein	N/A
eggNOG-mapper	UHGV-0025153_34	658088.HMPREF0987_01104	195.0	0	the current gene model (or a revised gene model) may contain a frame shift	N/A
Pfam	UHGV-0025153_34	PF05895	N/A	N/A	N/A	DUF859
COG	UHGV-0025153_34	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0025153_34	PF05895,MF_04116,NF010681,COG3291,COG5608	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0025153_35	NF038340	N/A	N/A	N/A	N/A
PHROG	UHGV-0025153_36	phrog_511	232.1	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0025153_36	1410650.JHWL01000003_gene2827	342.0	0	N/A	N/A
structural_annotation	UHGV-0025153_36	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0025153_37	phrog_12105	130.1	9.2e-39	N/A	unknown function
eggNOG-mapper	UHGV-0025153_37	1226322.HMPREF1545_03850	96.3	5.96e-24	N/A	N/A
PHROG	UHGV-0025153_39	phrog_1357	213.3	0	major head protein	head and packaging
UniRef90	UHGV-0025153_39	UniRef90_A0A2V2CFL5	469.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0025153_39	1410650.JHWL01000003_gene2830	263.0	0	N/A	N/A
Pfam	UHGV-0025153_39	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0025153_39	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0025153_39	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0025153_40	phrog_13908	155.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0025153_40	1410650.JHWL01000003_gene2831	93.6	4.71e-19	N/A	N/A
KOfam	UHGV-0025153_41	K07584	56.6	5.7e-16	N/A	N/A
PHROG	UHGV-0025153_41	phrog_4478	63.3	2.8e-18	peptidase	other
UniRef90	UHGV-0025153_41	UniRef90_A0A6N9P4C8	52.0	0.00000236	Ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0025153_41	555088.DealDRAFT_1009	53.5	0.000000109	Pfam:Peptidase_C108	N/A
Pfam	UHGV-0025153_41	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0025153_41	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0025153_41	PF04327,NF011133,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0025153_42	phrog_156	345.2	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0025153_42	1410650.JHWL01000003_gene2833	559.0	0	N/A	N/A
structural_annotation	UHGV-0025153_42	PF16510,MF_04120,TIGR01538,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0025153_43	K06909	123.7	2.1e-36	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0025153_43	phrog_979	133.6	6.09999e-41	terminase large subunit	head and packaging
UniRef90	UHGV-0025153_43	UniRef90_A0A810Q5R0	620.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0025153_43	1410650.JHWL01000003_gene2834	591.0	0	N/A	N/A
Pfam	UHGV-0025153_43	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0025153_43	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0025153_43	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-0025153_44	UniRef90_A0A3A9EH82	84.3	3.46e-18	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0025153_44	397288.C806_03010	73.2	0.0000000000000163	N/A	N/A
structural_annotation	UHGV-0025153_44	PF13542	N/A	N/A	N/A	N/A
PHROG	UHGV-0025153_46	phrog_3584	110.9	8.9e-33	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0025153_46	1226322.HMPREF1545_03841	97.1	3.12e-21	N/A	N/A
structural_annotation	UHGV-0025153_46	PF01446,NF041486	N/A	N/A	N/A	N/A
PHROG	UHGV-0025153_47	phrog_5781	90.7	1.6e-26	N/A	unknown function
UniRef90	UHGV-0025153_47	UniRef90_A0A413FXK8	102.0	1.44e-26	N/A	N/A
eggNOG-mapper	UHGV-0025153_47	1397284.AYMN01000083_gene2419	90.5	1.67e-22	N/A	N/A
Pfam	UHGV-0025153_47	PF14359	N/A	N/A	N/A	DUF4406
COG	UHGV-0025153_47	COG3613	N/A	N/A	Nucleoside 2-deoxyribosyltransferase	N/A
structural_annotation	UHGV-0025153_47	PF14359,MF_03036,TIGR02133,COG3613	N/A	N/A	N/A	N/A
UniRef90	UHGV-0025153_50	UniRef90_A0A8D9PDK2	64.3	0.0000000000374	Zinc-ribbon containing domain	N/A
PHROG	UHGV-0025153_51	phrog_1384	128.5	4.4e-38	Mom-like DNA modification protein	other
eggNOG-mapper	UHGV-0025153_51	665956.HMPREF1032_03086	274.0	0	COG NOG12663 non supervised orthologous group	N/A
structural_annotation	UHGV-0025153_51	PF11124,MF_02210,NF040502,COG3818	N/A	N/A	N/A	N/A
PHROG	UHGV-0025153_52	phrog_3136	142.3	1.3999e-42	N/A	unknown function
UniRef90	UHGV-0025153_52	UniRef90_UPI001CBCD733	166.0	0	ASCH domain-containing protein	N/A
COG	UHGV-0025153_52	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0025153_52	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0025153_53	phrog_38832	94.5	8.7e-28	N/A	unknown function
eggNOG-mapper	UHGV-0025153_53	665956.HMPREF1032_00143	69.7	0.00000000000156	N/A	N/A
KOfam	UHGV-0025153_56	K00571	109.9	3.1e-32	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0025153_56	phrog_23224	197.6	0	DNA methyltransferase	other
UniRef90	UHGV-0025153_56	UniRef90_D4K450	341.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0025153_56	718252.FP2_06750	341.0	0	DNA methylase	N/A
PADLOC	UHGV-0025153_56	MTase_II_00172	89.9	1e-27	Type II methyltransferase	RM
Pfam	UHGV-0025153_56	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0025153_56	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0025153_56	PF01555,NF010253,COG0863	N/A	N/A	N/A	N/A
KOfam	UHGV-0025153_57	K00558	48.4	0.000000000000081	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0025153_57	phrog_757	123.0	1.8e-36	DNA methyltransferase	other
UniRef90	UHGV-0025153_57	UniRef90_A0A8D9PDD1	373.0	0	DNA (Cytosine 5) methyltransferase	N/A
eggNOG-mapper	UHGV-0025153_57	411473.RUMCAL_00286	346.0	0	C-5 cytosine-specific DNA methylase	N/A
Pfam	UHGV-0025153_57	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0025153_57	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0025153_57	PF00145,MF_00341,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-0025153_58	K00390	56.8	2.2e-16	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0025153_58	phrog_424	131.8	4.5e-39	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0025153_58	UniRef90_A0A1H7KWC5	315.0	0	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase	N/A
eggNOG-mapper	UHGV-0025153_58	665956.HMPREF1032_00140	282.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
Pfam	UHGV-0025153_58	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0025153_58	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0025153_58	PF01507,MF_00063,NF006327,COG0175	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0025153	Yes	42,380	56	100	1
UHGV-1800132	No	16,022	57	37	1
UHGV-0208511	No	15,658	55	36	1
UHGV-1764276	No	15,246	57	35	1
UHGV-0536926	No	14,711	55	34	1