vOTU vOTU-043725

vOTU: vOTU-043725

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-043725
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00134 → vGENUS-00111 → vSUBGEN-33831 → vOTU-043725
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0026566
Biosample ID	SAMEA4766100
Genome length (bp)	35,550 bps
CheckV completeness	100.00% (Complete)
CDS count	55
CDS density	92.16%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	1364	Host agreement	82.55
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0026566_4	UniRef90_A0A374MZ40	114.0	4.33e-32	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0026566_4	411459.RUMOBE_01706	50.8	0.0000000659	N/A	N/A
Pfam	UHGV-0026566_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0026566_4	PF01381,NF040522,COG2944	N/A	N/A	N/A	N/A
KOfam	UHGV-0026566_5	K00571	171.0	0	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0026566_5	phrog_498	107.3	2e-31	DNA methyltransferase	other
UniRef90	UHGV-0026566_5	UniRef90_A0A412UM21	422.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0026566_5	1226322.HMPREF1545_02860	163.0	0	N/A	N/A
PADLOC	UHGV-0026566_5	MTase_II_00157	143.8	1.49939e-43	Type II methyltransferase	RM
Pfam	UHGV-0026566_5	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0026566_5	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0026566_5	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
KOfam	UHGV-0026566_6	K01447	57.4	3.2e-16	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0026566_6	phrog_20388	303.6	0	endolysin	lysis
UniRef90	UHGV-0026566_6	UniRef90_A0A374N1L8	555.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0026566_6	1203606.HMPREF1526_00253	314.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0026566_6	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0026566_6	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0026566_6	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0026566_6	PF01510,PF01476,PF15591,MF_02014,MF_04111,MF_01354,NF008758,NF010723,TIGR00405,COG3023,COG5004,COG2139	N/A	N/A	N/A	N/A
PHROG	UHGV-0026566_7	phrog_774	59.8	5.5e-17	N/A	unknown function
eggNOG-mapper	UHGV-0026566_7	397290.C810_05225	106.0	6.54e-29	N/A	N/A
PHROG	UHGV-0026566_8	phrog_199	75.4	7e-22	holin	lysis
UniRef90	UHGV-0026566_8	UniRef90_A0A2N0ULW7	264.0	0	Holin	N/A
eggNOG-mapper	UHGV-0026566_8	1160721.RBI_I01565	141.0	5.18999e-41	Bacteriophage holin family	N/A
Pfam	UHGV-0026566_8	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0026566_8	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0026566_8	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0026566_8	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
UniRef90	UHGV-0026566_10	UniRef90_A0A374N9Y2	211.0	0	N/A	N/A
structural_annotation	UHGV-0026566_10	PF10651,PF08931,TIGR02268	N/A	N/A	N/A	N/A
PHROG	UHGV-0026566_11	phrog_1067	90.4	7.5e-27	minor head protein	head and packaging
eggNOG-mapper	UHGV-0026566_11	1160721.RBI_I01574	100.0	4.19e-20	Prophage endopeptidase tail	N/A
NCBIFam	UHGV-0026566_11	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0026566_11	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0026566_11	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0026566_12	phrog_33	83.3	5e-24	distal tail protein Dit	tail
UniRef90	UHGV-0026566_12	UniRef90_A0A1G5CPA2	147.0	1.5e-39	Phage-related protein	N/A
eggNOG-mapper	UHGV-0026566_12	1444306.JFZC01000034_gene2623	92.4	1.22e-19	tail component	N/A
COG	UHGV-0026566_12	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0026566_12	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-0026566_13	K20283	48.4	0.000000000000024	GOLGA4; golgin subfamily A member 4	N/A
PHROG	UHGV-0026566_13	phrog_1272	250.0	0	tail length tape measure protein	tail
UniRef90	UHGV-0026566_13	UniRef90_A0A412ULX0	1998.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0026566_13	588581.Cpap_1264	251.0	0	Tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0026566_13	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-0026566_13	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0026566_13	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0026566_14	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0026566_15	phrog_88	72.9	4.4e-21	major tail protein	tail
UniRef90	UHGV-0026566_15	UniRef90_A0A1G5CNS8	149.0	5.79997e-42	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0026566_15	1235800.C819_03956	61.2	0.00000000847	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0026566_15	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0026566_15	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
UniRef90	UHGV-0026566_16	UniRef90_UPI000E5564A4	267.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0026566_16	1235792.C808_00089	50.8	0.00000434	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0026566_16	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0026566_16	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0026566_17	879305.HMPREF9290_0134	48.9	0.00000802	N/A	N/A
structural_annotation	UHGV-0026566_17	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
PHROG	UHGV-0026566_18	phrog_19734	74.3	1.5e-21	N/A	unknown function
eggNOG-mapper	UHGV-0026566_18	86416.Clopa_0343	60.5	0.000000000316	N/A	N/A
NCBIFam	UHGV-0026566_18	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0026566_18	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0026566_19	phrog_749	56.7	3.8e-16	N/A	unknown function
UniRef90	UHGV-0026566_19	UniRef90_A0A1G5CMX8	108.0	1.06e-28	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0026566_19	1211817.CCAT010000053_gene2133	62.0	0.0000000000366	N/A	N/A
PHROG	UHGV-0026566_20	phrog_10	125.1	7.5e-37	major head protein	head and packaging
UniRef90	UHGV-0026566_20	UniRef90_A0A412ULW9	733.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0026566_20	1211817.CCAT010000053_gene2132	320.0	0	Phage capsid family	N/A
Pfam	UHGV-0026566_20	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0026566_20	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0026566_20	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0026566_20	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0026566_21	K01358	137.1	1.8e-40	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0026566_21	phrog_94	205.2	0	head maturation protease	head and packaging
UniRef90	UHGV-0026566_21	UniRef90_A0A412ULU1	437.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0026566_21	86416.Clopa_0340	171.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0026566_21	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0026566_21	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0026566_21	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0026566_22	phrog_12	96.4	2.2e-28	portal protein	head and packaging
UniRef90	UHGV-0026566_22	UniRef90_A0A412ULV9	719.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0026566_22	1415774.U728_1254	266.0	0	Phage portal protein	N/A
Pfam	UHGV-0026566_22	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0026566_22	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0026566_22	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0026566_22	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0026566_23	K00571	171.8	0	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0026566_23	phrog_67	151.8	0	DNA methyltransferase	other
UniRef90	UHGV-0026566_23	UniRef90_A0A374DDR5	437.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0026566_23	877240.E1AC06_9CAUD	252.0	0	helicase activity	N/A
PADLOC	UHGV-0026566_23	MTase_II_00157	169.8	0	Type II methyltransferase	RM
Pfam	UHGV-0026566_23	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
structural_annotation	UHGV-0026566_23	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0026566_24	phrog_9	290.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-0026566_24	UniRef90_A0A412UM03	1043.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0026566_24	86416.Clopa_0337	611.0	0	Phage Terminase	N/A
Pfam	UHGV-0026566_24	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0026566_24	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0026566_24	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0026566_24	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0026566_25	phrog_5110	80.3	1.7e-23	terminase small subunit	head and packaging
UniRef90	UHGV-0026566_25	UniRef90_A0A1M5U1D5	112.0	2.41e-30	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-0026566_25	1211817.CCAT010000053_gene2128	99.4	8.96e-26	N/A	N/A
Pfam	UHGV-0026566_25	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0026566_25	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0026566_26	phrog_119	67.3	2.3e-19	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0026566_26	UniRef90_A0A412ULY9	206.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0026566_26	1158607.UAU_01026	99.4	1.18e-25	HNH endonuclease	N/A
Pfam	UHGV-0026566_26	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0026566_26	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
eggNOG-mapper	UHGV-0026566_27	394503.Ccel_3053	51.6	0.00000187	N/A	N/A
structural_annotation	UHGV-0026566_27	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0026566_28	phrog_3584	145.1	4.69435e-43	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0026566_28	1235800.C819_00515	63.2	0.00000000533	N/A	N/A
structural_annotation	UHGV-0026566_28	PF21578,NF041486	N/A	N/A	N/A	N/A
PHROG	UHGV-0026566_30	phrog_2999	44.6	0.0000000000032	N/A	unknown function
PHROG	UHGV-0026566_32	phrog_2118	121.2	9.4e-36	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0026566_32	UniRef90_A0A374DVG7	243.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0026566_32	610130.Closa_0730	149.0	4.2039e-45	HNH endonuclease	N/A
Pfam	UHGV-0026566_32	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0026566_32	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0026566_32	TIGR02646,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-0026566_34	phrog_824	143.8	5.49309e-43	N/A	unknown function
UniRef90	UHGV-0026566_34	UniRef90_A0A3D3D6C6	244.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0026566_34	397288.C806_00096	154.0	0	VRR_NUC	N/A
Pfam	UHGV-0026566_34	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0026566_34	PF08774	N/A	N/A	N/A	N/A
PHROG	UHGV-0026566_35	phrog_24518	82.4	5.4e-24	N/A	unknown function
eggNOG-mapper	UHGV-0026566_35	1519439.JPJG01000077_gene922	110.0	1.35e-27	N/A	N/A
KOfam	UHGV-0026566_37	K03427	156.5	0	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	N/A
PHROG	UHGV-0026566_37	phrog_6380	361.0	0	DNA methyltransferase	other
UniRef90	UHGV-0026566_37	UniRef90_UPI001B3C6DA9	658.0	0	N-6 DNA methylase	N/A
eggNOG-mapper	UHGV-0026566_37	1444306.JFZC01000034_gene2643	312.0	0	type I restriction-modification system	N/A
PADLOC	UHGV-0026566_37	MTase_I_00010	96.2	4e-28	Type I methyltransferase	RM
Pfam	UHGV-0026566_37	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-0026566_37	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-0026566_37	PF02384,MF_01872,TIGR00497,COG0286	N/A	N/A	N/A	N/A
KOfam	UHGV-0026566_38	K03497	157.5	0	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0026566_38	phrog_6218	247.3	0	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0026566_38	UniRef90_UPI000E47CAB6	757.0	0	ParB/RepB/Spo0J family partition protein	N/A
eggNOG-mapper	UHGV-0026566_38	394503.Ccel_3306	241.0	0	Belongs to the ParB family	N/A
Pfam	UHGV-0026566_38	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
NCBIFam	UHGV-0026566_38	TIGR00180.1	N/A	N/A	ParB/RepB/Spo0J family partition protein	N/A
COG	UHGV-0026566_38	COG0710	N/A	N/A	3-dehydroquinate dehydratase	N/A
structural_annotation	UHGV-0026566_38	PF18579,MF_02015,TIGR00180,COG1475	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0026566_42	COG1862	N/A	N/A	N/A	N/A
PHROG	UHGV-0026566_43	phrog_6058	42.1	0.0000000000097	N/A	unknown function
structural_annotation	UHGV-0026566_43	NF033787	N/A	N/A	N/A	N/A
UniRef90	UHGV-0026566_44	UniRef90_UPI0015F48AC0	105.0	1.87e-28	Lar family restriction alleviation protein	N/A
structural_annotation	UHGV-0026566_46	PF15597	N/A	N/A	N/A	N/A
UniRef90	UHGV-0026566_50	UniRef90_UPI000E51362F	130.0	1.26e-38	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0026566_50	411461.DORFOR_00030	51.2	0.0000000865	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0026566_50	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0026566_50	PF13443,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0026566_51	phrog_8	45.1	0.000000000002	transcriptional regulator	transcription regulation
UniRef90	UHGV-0026566_51	UniRef90_UPI0015F3DE1D	286.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0026566_51	663278.Ethha_2423	73.2	0.0000000000000185	sequence-specific DNA binding	N/A
Pfam	UHGV-0026566_51	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0026566_51	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0026566_51	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0026566_52	phrog_1914	151.1	5.60519e-45	N/A	unknown function
UniRef90	UHGV-0026566_52	UniRef90_UPI000E543E50	340.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0026566_52	1160721.RBI_I01604	171.0	0	N/A	N/A
Pfam	UHGV-0026566_52	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0026566_52	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0026566_52	PF06114,COG2856	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0026566_54	1232447.BAHW02000014_gene830	51.6	0.00000111	N/A	N/A
KOfam	UHGV-0026566_55	K14059	98.0	1.5e-28	int; integrase	N/A
PHROG	UHGV-0026566_55	phrog_1	120.2	2.3e-35	integrase	integration and excision
UniRef90	UHGV-0026566_55	UniRef90_A0A1G5CL52	791.0	0	Phage integrase family protein	N/A
eggNOG-mapper	UHGV-0026566_55	693746.OBV_41260	184.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0026566_55	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0026566_55	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0026566_55	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0026566	Yes	35,550	39	100	1
UHGV-0006062	No	36,914	39	100	1