vOTU vOTU-043887

vOTU: vOTU-043887

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-043887
Number of genomes	19
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae
Taxonomy (UHGV)	vFAM-00022 → vSUBFAM-00431 → vGENUS-01057 → vSUBGEN-00720 → vOTU-043887
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae
Host range breadth	Family
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0028120
Biosample ID	SAMEA4766399
Genome length (bp)	34,818 bps
CheckV completeness	100.00% (Complete)
CDS count	55
CDS density	92.06%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae	Total connections	436	Host agreement	98.17
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae	Total connections	21	Host agreement	95.24

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0028120_1	phrog_17147	277.4	0	N/A	unknown function
UniRef90	UHGV-0028120_1	UniRef90_A0A374JQW7	1002.0	0	N/A	N/A
eggNOG-mapper	UHGV-0028120_1	33035.JPJF01000043_gene1001	233.0	0	N/A	N/A
KOfam	UHGV-0028120_2	K00986	93.0	3.5e-27	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-0028120_2	phrog_1423	144.7	8.96831e-44	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0028120_2	UniRef90_A0A374JNY7	774.0	0	Reverse transcriptase domain-containing protein	N/A
eggNOG-mapper	UHGV-0028120_2	33035.JPJF01000043_gene1000	266.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
PADLOC	UHGV-0028120_2	icity0040	53.2	1.5e-16	RT (reverse transcriptase)	CRISPR-CAS
Pfam	UHGV-0028120_2	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
COG	UHGV-0028120_2	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-0028120_2	PF00078,MF_04065,TIGR04416,COG3344	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0028120_5	742733.HMPREF9469_01798	63.5	0.00000000000455	N/A	N/A
PHROG	UHGV-0028120_6	phrog_263	80.0	1.8e-23	holin	lysis
UniRef90	UHGV-0028120_6	UniRef90_R6GD40	161.0	0	Holin SPP1 family	N/A
eggNOG-mapper	UHGV-0028120_6	764291.STRUR_2085	82.8	1.75e-19	SPP1 phage holin	N/A
Pfam	UHGV-0028120_6	PF04688	N/A	N/A	SPP1 phage holin	Holin_SPP1
NCBIFam	UHGV-0028120_6	TIGR01592.1	N/A	N/A	phage holin	N/A
structural_annotation	UHGV-0028120_6	PF04688,TIGR01592	N/A	N/A	N/A	N/A
KOfam	UHGV-0028120_7	K07273	190.2	0	acm; lysozyme	N/A
PHROG	UHGV-0028120_7	phrog_291	212.2	0	endolysin	lysis
UniRef90	UHGV-0028120_7	UniRef90_A0A374JNX4	651.0	0	LysM peptidoglycan-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0028120_7	521003.COLINT_02363	290.0	0	CW_7 repeat	N/A
Pfam	UHGV-0028120_7	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-0028120_7	PF08230	N/A	N/A	CW_7 repeat	CW_7
Pfam	UHGV-0028120_7	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-0028120_7	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0028120_7	PF01183,PF01476,TIGR02899,COG3757,COG1388	N/A	N/A	N/A	N/A
UniRef90	UHGV-0028120_8	UniRef90_R6G3J8	65.9	0.000000000000644	(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB	N/A
eggNOG-mapper	UHGV-0028120_8	537007.BLAHAN_04736	79.0	1.16e-16	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine	N/A
COG	UHGV-0028120_8	COG0621	N/A	N/A	tRNA A37 methylthiotransferase MiaB	N/A
KOfam	UHGV-0028120_9	K06400	333.6	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0028120_9	phrog_95	368.2	0	integrase	integration and excision
UniRef90	UHGV-0028120_9	UniRef90_A0A374JP43	1124.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0028120_9	411468.CLOSCI_00582	739.0	0	Recombinase	N/A
Pfam	UHGV-0028120_9	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0028120_9	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0028120_9	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0028120_9	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
KOfam	UHGV-0028120_10	K22299	55.4	0.0000000000000015	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0028120_10	phrog_8	46.6	0.00000000000072	transcriptional regulator	transcription regulation
UniRef90	UHGV-0028120_10	UniRef90_A0A350VIR9	186.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0028120_10	1005705.HMPREF9967_0944	99.0	2.02e-23	Peptidase S24-like	N/A
Pfam	UHGV-0028120_10	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0028120_10	COG2932	N/A	N/A	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	N/A
structural_annotation	UHGV-0028120_10	PF01381,MF_02017,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0028120_11	K07729	55.6	0.0000000000000013	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0028120_11	phrog_8	50.5	0.000000000000052	transcriptional regulator	transcription regulation
UniRef90	UHGV-0028120_11	UniRef90_A0A350VIS0	103.0	4.95e-28	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0028120_11	1123263.AUKY01000072_gene2113	60.8	0.00000000000978	Cro/C1-type HTH DNA-binding domain	N/A
PADLOC	UHGV-0028120_11	retron_type_VI_hth_cluster2_1	45.5	0.0000000000022	N/A	Retron
Pfam	UHGV-0028120_11	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0028120_11	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0028120_12	PF17648,NF007603,COG2315	N/A	N/A	N/A	N/A
UniRef90	UHGV-0028120_19	UniRef90_A0A374JR06	134.0	6.10001e-40	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0028120_19	1226325.HMPREF1548_06746	63.5	0.0000000000031	N/A	N/A
structural_annotation	UHGV-0028120_22	PF13058	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0028120_25	411468.CLOSCI_00572	81.6	4.06e-18	N/A	N/A
PHROG	UHGV-0028120_27	phrog_20014	56.1	4.7e-16	N/A	unknown function
eggNOG-mapper	UHGV-0028120_27	1235798.C817_02590	74.7	1.94e-16	N/A	N/A
PHROG	UHGV-0028120_28	phrog_25385	72.8	4.5e-21	N/A	unknown function
eggNOG-mapper	UHGV-0028120_28	411468.CLOSCI_00565	109.0	3.25e-29	N/A	N/A
PHROG	UHGV-0028120_30	phrog_24386	123.6	1.8e-36	N/A	unknown function
eggNOG-mapper	UHGV-0028120_30	411468.CLOSCI_00562	184.0	0	COG NOG28949 non supervised orthologous group	N/A
COG	UHGV-0028120_30	COG0241	N/A	N/A	Histidinol phosphatase/D-glycero-mannoheptose bisphosphatephosphatase, HAD superfamily	N/A
structural_annotation	UHGV-0028120_30	TIGR01689,COG0241	N/A	N/A	N/A	N/A
PHROG	UHGV-0028120_33	phrog_3584	244.0	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0028120_33	411468.CLOSCI_00558	425.0	0	N/A	N/A
structural_annotation	UHGV-0028120_33	PF21578	N/A	N/A	N/A	N/A
PHROG	UHGV-0028120_34	phrog_824	121.5	3.8e-36	N/A	unknown function
UniRef90	UHGV-0028120_34	UniRef90_A0A374JR68	333.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0028120_34	411468.CLOSCI_00556	242.0	0	VRR_NUC	N/A
Pfam	UHGV-0028120_34	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
eggNOG-mapper	UHGV-0028120_35	1235800.C819_02253	60.5	0.0000000121	N/A	N/A
eggNOG-mapper	UHGV-0028120_36	411468.CLOSCI_00554	123.0	8.88e-35	N/A	N/A
PHROG	UHGV-0028120_37	phrog_119	64.2	2e-18	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0028120_37	UniRef90_A0A374JQS6	231.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0028120_37	411468.CLOSCI_00553	133.0	5.57e-39	HNH endonuclease	N/A
COG	UHGV-0028120_37	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0028120_38	phrog_1066	51.5	0.000000000000016	N/A	unknown function
eggNOG-mapper	UHGV-0028120_38	411902.CLOBOL_03883	73.6	0.0000000000000167	N/A	N/A
PHROG	UHGV-0028120_39	phrog_9	341.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0028120_39	UniRef90_A0A374JP15	1100.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0028120_39	411468.CLOSCI_00551	898.0	0	COG COG4626 Phage terminase-like protein, large subunit	N/A
Pfam	UHGV-0028120_39	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0028120_39	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0028120_39	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0028120_39	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0028120_40	phrog_12	173.5	0	portal protein	head and packaging
UniRef90	UHGV-0028120_40	UniRef90_A0A374JP76	783.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0028120_40	411468.CLOSCI_00550	616.0	0	Phage portal protein	N/A
Pfam	UHGV-0028120_40	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0028120_40	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0028120_40	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0028120_41	K01358	142.8	3.09967e-42	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0028120_41	phrog_94	213.4	0	head maturation protease	head and packaging
UniRef90	UHGV-0028120_41	UniRef90_A0A374JQH6	504.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0028120_41	411468.CLOSCI_00549	337.0	0	COG COG0740 Protease subunit of ATP-dependent Clp proteases	N/A
Pfam	UHGV-0028120_41	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0028120_41	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0028120_41	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0028120_42	phrog_10	129.1	3.8e-38	major head protein	head and packaging
UniRef90	UHGV-0028120_42	UniRef90_A0A374JNW0	763.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0028120_42	411468.CLOSCI_00548	598.0	0	Phage capsid family	N/A
Pfam	UHGV-0028120_42	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0028120_42	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-0028120_42	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0028120_43	phrog_5223	54.4	0.0000000000000016	neck protein	connector
UniRef90	UHGV-0028120_43	UniRef90_A0A174XIL0	127.0	2.23e-36	N/A	N/A
eggNOG-mapper	UHGV-0028120_43	411468.CLOSCI_00547	121.0	7.21e-35	N/A	N/A
PHROG	UHGV-0028120_44	phrog_1951	65.6	6.1e-19	head-tail adaptor	connector
UniRef90	UHGV-0028120_44	UniRef90_UPI00189EBA11	170.0	0	phage head closure protein	N/A
eggNOG-mapper	UHGV-0028120_44	491915.Aflv_0668	48.5	0.00000852	head-tail adaptor	N/A
NCBIFam	UHGV-0028120_44	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-0028120_44	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0028120_44	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0028120_45	phrog_5	43.0	0.000000000011	tail completion or Neck1 protein	connector
UniRef90	UHGV-0028120_45	UniRef90_UPI001C00E12E	120.0	1.73e-32	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0028120_45	457421.CBFG_03712	128.0	2.32e-36	N/A	N/A
structural_annotation	UHGV-0028120_45	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0028120_46	411468.CLOSCI_00544	139.0	2.64005e-41	N/A	N/A
structural_annotation	UHGV-0028120_46	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0028120_47	phrog_2175	80.2	2.7e-23	protein with Ig domain	other
eggNOG-mapper	UHGV-0028120_47	411468.CLOSCI_00543	199.0	0	N/A	N/A
structural_annotation	UHGV-0028120_47	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0028120_48	411468.CLOSCI_00542	149.0	2.8026e-45	N/A	N/A
structural_annotation	UHGV-0028120_48	PF17388	N/A	N/A	N/A	N/A
PHROG	UHGV-0028120_49	phrog_1272	428.4	0	tail length tape measure protein	tail
UniRef90	UHGV-0028120_49	UniRef90_A0A374JNY3	1276.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0028120_49	588581.Cpap_1264	404.0	0	Tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0028120_49	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-0028120_49	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0028120_49	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0028120_50	phrog_33	83.0	6.1e-24	distal tail protein Dit	tail
UniRef90	UHGV-0028120_50	UniRef90_R6GVG8	172.0	0	Phage putative tail component N-domain protein	N/A
eggNOG-mapper	UHGV-0028120_50	1567011.A0A0A7RWN1_9VIRU	105.0	7.55e-25	Phage tail protein	N/A
Pfam	UHGV-0028120_50	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
structural_annotation	UHGV-0028120_50	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0028120_51	phrog_1067	411.1	0	minor head protein	head and packaging
UniRef90	UHGV-0028120_51	UniRef90_A0A374JQG5	1902.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0028120_51	1160721.RBI_I01574	426.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0028120_51	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0028120_51	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0028120_51	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0028120_51	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0028120_53	411471.SUBVAR_06976	57.8	0.00000000332	N/A	N/A
eggNOG-mapper	UHGV-0028120_54	1111121.HMPREF1247_1244	66.6	0.000000000000141	N/A	N/A
PHROG	UHGV-0028120_55	phrog_19280	68.9	5.9e-20	N/A	unknown function
UniRef90	UHGV-0028120_55	UniRef90_UPI0018A009CA	288.0	0	BppU family phage baseplate upper protein	N/A
eggNOG-mapper	UHGV-0028120_55	537013.CLOSTMETH_03776	80.1	0.00000000000000333	N/A	N/A
Pfam	UHGV-0028120_55	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0028120	Yes	34,818	45	100	1
UHGV-0008492	No	35,316	45	100	1
UHGV-1535030	No	36,110	45	100	1
UHGV-1519189	No	35,985	45	100	1
UHGV-1526045	No	35,979	45	100	1
UHGV-0110540	No	35,728	45	100	1
UHGV-1547619	No	35,709	45	100	1
UHGV-0035327	No	35,074	45	99	1
UHGV-0038249	No	34,792	45	98	1
UHGV-0004429	No	34,679	45	98	1
UHGV-0060172	No	31,360	46	89	1
UHGV-1529398	No	30,393	45	86	1
UHGV-0036085	No	29,089	45	82	1
UHGV-1404990	No	27,114	45	77	1
UHGV-1423292	No	21,968	46	62	1
UHGV-1824040	No	15,500	43	44	1
UHGV-1643844	No	13,461	46	39	1
UHGV-1754968	No	13,520	46	38	1
UHGV-1653874	No	10,089	46	28	1