vOTU vOTU-043924

vOTU: vOTU-043924

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-043924
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00751 → vGENUS-00991 → vSUBGEN-20020 → vOTU-043924
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0028590
Biosample ID	SAMEA4766318
Genome length (bp)	38,975 bps
CheckV completeness	100.00% (Complete)
CDS count	50
CDS density	90.72%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus	Total connections	21	Host agreement	76.19
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus → Limivicinus sp003150355	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0028590_1	1519439.JPJG01000060_gene1892	75.9	0.000000000000318	Collagen triple helix repeat (20 copies)	N/A
COG	UHGV-0028590_1	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
PHROG	UHGV-0028590_3	phrog_511	226.0	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0028590_3	1410650.JHWL01000003_gene2827	352.0	0	N/A	N/A
structural_annotation	UHGV-0028590_3	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0028590_4	phrog_12105	99.4	2.7e-29	N/A	unknown function
eggNOG-mapper	UHGV-0028590_4	1519439.JPJG01000060_gene1891	68.6	0.000000000000405	N/A	N/A
PHROG	UHGV-0028590_6	phrog_1357	220.8	0	major head protein	head and packaging
UniRef90	UHGV-0028590_6	UniRef90_A0A3C0NPN1	558.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0028590_6	1410650.JHWL01000003_gene2830	264.0	0	N/A	N/A
NCBIFam	UHGV-0028590_6	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0028590_6	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0028590_7	phrog_13908	174.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0028590_7	1321782.HMPREF1986_00346	57.8	0.00000133	N/A	N/A
PHROG	UHGV-0028590_8	phrog_22978	507.5	0	N/A	unknown function
UniRef90	UHGV-0028590_8	UniRef90_UPI001CF7F562	313.0	0	peptidoglycan DD-metalloendopeptidase family protein	N/A
eggNOG-mapper	UHGV-0028590_8	1410650.JHWL01000003_gene2814	309.0	0	N/A	N/A
Pfam	UHGV-0028590_8	PF18838	N/A	N/A	Large polyvalent protein associated domain 23	LPD23
Pfam	UHGV-0028590_8	PF18798	N/A	N/A	Large polyvalent protein-associated domain 3	LPD3
eggNOG-mapper	UHGV-0028590_9	1410650.JHWL01000003_gene2815	129.0	5.52e-31	N/A	N/A
KOfam	UHGV-0028590_10	K07584	56.7	5.1e-16	N/A	N/A
PHROG	UHGV-0028590_10	phrog_4478	51.6	0.000000000000013	peptidase	other
UniRef90	UHGV-0028590_10	UniRef90_A0A2N6APL4	50.4	0.00000946	Ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0028590_10	1114972.AUAW01000001_gene1462	48.5	0.00000794	Cysteine protease Prp	N/A
Pfam	UHGV-0028590_10	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0028590_10	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0028590_10	PF04327,NF011133,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0028590_11	phrog_156	273.3	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0028590_11	1410650.JHWL01000003_gene2833	486.0	0	N/A	N/A
structural_annotation	UHGV-0028590_11	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0028590_12	K06909	143.8	1.49939e-42	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0028590_12	phrog_979	140.1	4.69435e-43	terminase large subunit	head and packaging
UniRef90	UHGV-0028590_12	UniRef90_A0A3C0NMI6	694.0	0	Terminase-like family protein	N/A
eggNOG-mapper	UHGV-0028590_12	1410650.JHWL01000003_gene2834	588.0	0	N/A	N/A
Pfam	UHGV-0028590_12	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0028590_12	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0028590_12	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-0028590_13	UniRef90_A0A3C0NNN3	64.7	0.000000000766	HTH psq-type domain-containing protein	N/A
PHROG	UHGV-0028590_16	phrog_3584	160.1	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0028590_16	1226322.HMPREF1545_03841	249.0	0	N/A	N/A
structural_annotation	UHGV-0028590_16	PF01446,NF041486	N/A	N/A	N/A	N/A
KOfam	UHGV-0028590_17	K00571	95.4	6.5e-28	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0028590_17	phrog_23224	179.3	0	DNA methyltransferase	other
UniRef90	UHGV-0028590_17	UniRef90_UPI001CBBED6E	376.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-0028590_17	718252.FP2_06750	367.0	0	DNA methylase	N/A
PADLOC	UHGV-0028590_17	MTase_II_00172	91.8	1.6e-28	Type II methyltransferase	RM
Pfam	UHGV-0028590_17	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0028590_17	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0028590_17	PF01555,NF010253,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0028590_18	phrog_3136	127.1	5.4e-38	N/A	unknown function
UniRef90	UHGV-0028590_18	UniRef90_UPI001CBCD733	117.0	2.79e-29	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0028590_18	97139.C824_00742	70.5	0.00000000000146	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0028590_18	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0028590_18	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0028590_19	phrog_22543	42.8	0.0000000000084	N/A	unknown function
eggNOG-mapper	UHGV-0028590_22	1121423.JONT01000060_gene932	46.2	0.00000265	Belongs to the MT-A70-like family	N/A
COG	UHGV-0028590_22	COG4725	N/A	N/A	N6-adenosine-specific RNA methylase IME4	N/A
PHROG	UHGV-0028590_23	phrog_24518	71.3	1.4e-20	N/A	unknown function
eggNOG-mapper	UHGV-0028590_23	693746.OBV_25370	89.0	2.58e-19	N/A	N/A
PHROG	UHGV-0028590_24	phrog_824	152.6	1.4013e-45	N/A	unknown function
UniRef90	UHGV-0028590_24	UniRef90_A0A6N8GXS9	172.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0028590_24	665956.HMPREF1032_00132	153.0	1.4013e-45	VRR_NUC	N/A
Pfam	UHGV-0028590_24	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
UniRef90	UHGV-0028590_34	UniRef90_A0A2N2CNE6	75.9	9.67e-16	N/A	N/A
eggNOG-mapper	UHGV-0028590_34	742738.HMPREF9460_02806	78.6	3.84e-16	N/A	N/A
KOfam	UHGV-0028590_36	K22300	51.8	0.000000000000016	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0028590_36	phrog_2967	44.3	0.0000000000028	transcriptional regulator	transcription regulation
UniRef90	UHGV-0028590_36	UniRef90_UPI001EDCF802	103.0	9.01e-26	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0028590_36	748224.HMPREF9436_01444	90.1	3.5e-21	N/A	N/A
Pfam	UHGV-0028590_36	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0028590_36	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0028590_36	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0028590_37	K19167	128.4	7e-38	abiQ; protein AbiQ	N/A
PHROG	UHGV-0028590_37	phrog_9764	142.9	1.60028e-42	N/A	unknown function
UniRef90	UHGV-0028590_37	UniRef90_A0A845R8D8	231.0	0	Type III toxin-antitoxin system ToxN/AbiQ family toxin	N/A
eggNOG-mapper	UHGV-0028590_37	1519439.JPJG01000060_gene1906	175.0	0	Toxin ToxN, type III toxin-antitoxin system	N/A
PADLOC	UHGV-0028590_37	AbiQ	157.9	0	AbiQ	Abi
Pfam	UHGV-0028590_37	PF13958	N/A	N/A	Toxin ToxN, type III toxin-antitoxin system	ToxN_toxin
structural_annotation	UHGV-0028590_37	PF13958	N/A	N/A	N/A	N/A
KOfam	UHGV-0028590_39	K14059	134.0	1.7e-39	int; integrase	N/A
PHROG	UHGV-0028590_39	phrog_1	145.6	3.79752e-43	integrase	integration and excision
UniRef90	UHGV-0028590_39	UniRef90_A0A2Z4QB94	281.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0028590_39	1514668.JOOA01000001_gene242	127.0	1.17e-30	Phage integrase family	N/A
Pfam	UHGV-0028590_39	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0028590_39	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0028590_39	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0028590_40	UniRef90_A0A7M1RS47	54.7	0.00000205	RNA polymerase sigma factor/ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0028590_40	1408437.JNJN01000043_gene801	70.5	0.000000000000939	N/A	N/A
structural_annotation	UHGV-0028590_43	PF16509,MF_00674,NF008895,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0028590_44	phrog_199	68.9	5.5e-20	holin	lysis
UniRef90	UHGV-0028590_44	UniRef90_A0A3C0NPD5	185.0	0	Holin	N/A
eggNOG-mapper	UHGV-0028590_44	742738.HMPREF9460_01388	149.0	8.26766e-44	Bacteriophage holin family	N/A
Pfam	UHGV-0028590_44	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0028590_44	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0028590_44	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0028590_44	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0028590_45	phrog_14030	165.4	0	N/A	unknown function
UniRef90	UHGV-0028590_45	UniRef90_A0A316NTC6	218.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0028590_45	641107.CDLVIII_3774	188.0	0	Bacteriophage peptidoglycan hydrolase	N/A
Pfam	UHGV-0028590_45	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
Pfam	UHGV-0028590_45	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0028590_45	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0028590_45	PF01471,PF05382,NF038080,NF033742,COG3409,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0028590_46	phrog_27545	83.5	2.6e-24	N/A	unknown function
UniRef90	UHGV-0028590_46	UniRef90_R6ELD6	68.2	0.00000000000789	Glycosyl hydrolase family 18 family protein	N/A
eggNOG-mapper	UHGV-0028590_46	1122971.BAME01000151_gene6566	98.2	1.85e-23	N/A	N/A
structural_annotation	UHGV-0028590_49	PF07210,TIGR03000	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0028590_50	1408422.JHYF01000026_gene3527	90.1	3.32e-20	nuclear chromosome segregation	N/A
COG	UHGV-0028590_50	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0028590	Yes	38,975	55	100	1
UHGV-0027739	No	40,457	55	100	1