vOTU vOTU-043967

vOTU: vOTU-043967

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-043967
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00822 → vGENUS-08698 → vSUBGEN-09043 → vOTU-043967
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0029068
Biosample ID	SAMEA4766268
Genome length (bp)	40,380 bps
CheckV completeness	100.00% (Complete)
CDS count	66
CDS density	90.79%
tRNA count	4
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	443	Host agreement	98.87
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0029068_1	K14059	142.4	5.79997e-42	int; integrase	N/A
PHROG	UHGV-0029068_1	phrog_1	170.7	0	integrase	integration and excision
UniRef90	UHGV-0029068_1	UniRef90_A0A174D176	416.0	0	Tyrosine recombinase XerD	N/A
eggNOG-mapper	UHGV-0029068_1	411471.SUBVAR_05137	232.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0029068_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0029068_1	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0029068_1	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0029068_2	UniRef90_A0A6N7TLT0	211.0	0	Helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0029068_2	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0029068_2	PF13560,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0029068_5	phrog_4980	125.3	5e-39	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
eggNOG-mapper	UHGV-0029068_5	658086.HMPREF0994_06731	90.9	2.85e-19	Host cell surface-exposed lipoprotein	N/A
Pfam	UHGV-0029068_5	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
Pfam	UHGV-0029068_5	PF07553	N/A	N/A	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
COG	UHGV-0029068_5	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-0029068_5	PF02631,MF_01114,NF001062,COG2137	N/A	N/A	N/A	N/A
KOfam	UHGV-0029068_8	K18830	56.7	4.8e-16	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0029068_8	phrog_8	46.1	0.0000000000006	transcriptional regulator	transcription regulation
UniRef90	UHGV-0029068_8	UniRef90_A0A844DFR0	209.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0029068_8	748224.HMPREF9436_01444	170.0	0	N/A	N/A
Pfam	UHGV-0029068_8	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0029068_8	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0029068_8	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0029068_12	PF04325	N/A	N/A	N/A	N/A
PHROG	UHGV-0029068_14	phrog_373	151.9	4.2039e-45	anti-repressor	transcription regulation
UniRef90	UHGV-0029068_14	UniRef90_UPI001CBC74BC	308.0	0	Rha family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0029068_14	748224.HMPREF9436_01449	156.0	4.34403e-44	Phage regulatory protein Rha (Phage_pRha)	N/A
Pfam	UHGV-0029068_14	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
NCBIFam	UHGV-0029068_14	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-0029068_14	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-0029068_14	PF09669,TIGR02681,COG3646	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0029068_17	PF10743,NF033787	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0029068_18	PF12270,NF040944	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0029068_20	PF14120	N/A	N/A	N/A	N/A
PHROG	UHGV-0029068_22	phrog_7838	129.3	3.2e-38	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0029068_22	UniRef90_A0A8D9UGW3	180.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-0029068_22	742767.HMPREF9456_02052	152.0	9.94922e-44	N/A	N/A
structural_annotation	UHGV-0029068_22	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
KOfam	UHGV-0029068_23	K03111	136.6	2.69999e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0029068_23	phrog_44	143.1	1.3999e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0029068_23	UniRef90_UPI001C00AA91	234.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0029068_23	718252.FP2_06770	222.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0029068_23	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0029068_23	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0029068_23	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0029068_23	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0029068_23	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0029068_24	K25373	53.3	0.0000000000000038	ACRV1; acrosomal protein SP-10	N/A
PHROG	UHGV-0029068_24	phrog_14105	238.6	0	N/A	unknown function
UniRef90	UHGV-0029068_24	UniRef90_U2BMS0	235.0	0	Pentapeptide repeat protein	N/A
eggNOG-mapper	UHGV-0029068_24	742740.HMPREF9474_02379	149.0	2.51001e-41	dextransucrase activity	N/A
Pfam	UHGV-0029068_24	PF01469	N/A	N/A	Pentapeptide repeats (8 copies)	Pentapeptide_2
COG	UHGV-0029068_24	COG5263	N/A	N/A	Glucan-binding domain (YG repeat)	N/A
PHROG	UHGV-0029068_25	phrog_15768	116.0	2.2e-34	N/A	unknown function
UniRef90	UHGV-0029068_25	UniRef90_A0A2J4JRQ7	256.0	0	N/A	N/A
eggNOG-mapper	UHGV-0029068_25	748224.HMPREF9436_03357	129.0	7.92e-34	N/A	N/A
Pfam	UHGV-0029068_25	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0029068_25	PF19808	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0029068_26	PF01775,MF_00273,NF001981,COG2157	N/A	N/A	N/A	N/A
UniRef90	UHGV-0029068_28	UniRef90_A0A845R8R0	101.0	3.79e-25	N/A	N/A
KOfam	UHGV-0029068_29	K01160	62.8	9.3e-18	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0029068_29	phrog_34	59.5	5.6e-17	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0029068_29	UniRef90_A0A844DBG8	243.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0029068_29	875454.BAEW01000002_gene491	135.0	1.16e-38	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0029068_29	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0029068_29	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0029068_31	PF07374,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0029068_33	phrog_2412	53.3	0.0000000000000045	N/A	unknown function
KOfam	UHGV-0029068_34	K06909	129.6	3.2e-38	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0029068_34	phrog_10250	137.2	6.50006e-41	N/A	unknown function
UniRef90	UHGV-0029068_34	UniRef90_A0A3A6EEP8	671.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0029068_34	1226322.HMPREF1545_00043	465.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0029068_34	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0029068_34	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0029068_34	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0029068_34	PF04466,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0029068_35	phrog_533	349.9	0	portal protein	head and packaging
UniRef90	UHGV-0029068_35	UniRef90_A0A291T9A9	714.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-0029068_35	748224.HMPREF9436_03340	711.0	0	N/A	N/A
structural_annotation	UHGV-0029068_35	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0029068_36	phrog_581	333.4	0	minor head protein	head and packaging
UniRef90	UHGV-0029068_36	UniRef90_D4K446	603.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0029068_36	718252.FP2_06690	603.0	0	N/A	N/A
Pfam	UHGV-0029068_36	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0029068_36	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0029068_36	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0029068_38	phrog_478	125.8	1.9e-37	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0029068_38	UniRef90_A0A373Q857	164.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0029068_38	1111121.HMPREF1247_0834	96.3	7.89e-24	N/A	N/A
PHROG	UHGV-0029068_39	phrog_194	55.2	8e-16	head scaffolding protein	head and packaging
UniRef90	UHGV-0029068_39	UniRef90_A0A1C6FYX1	138.0	2.52e-38	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0029068_39	663278.Ethha_0497	137.0	8.47e-39	N/A	N/A
Pfam	UHGV-0029068_39	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0029068_39	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0029068_40	phrog_10	190.2	0	major head protein	head and packaging
UniRef90	UHGV-0029068_40	UniRef90_A0A2A7AII3	523.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0029068_40	1120998.AUFC01000030_gene2236	405.0	0	Phage capsid family	N/A
Pfam	UHGV-0029068_40	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0029068_40	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0029068_40	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0029068_40	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0029068_41	phrog_541	78.6	7.3e-23	head-tail adaptor	connector
PHROG	UHGV-0029068_42	phrog_3366	92.7	3.7e-27	N/A	unknown function
Pfam	UHGV-0029068_42	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0029068_42	PF20536	N/A	N/A	N/A	N/A
PHROG	UHGV-0029068_43	phrog_556	93.4	1.7e-27	minor head protein	head and packaging
UniRef90	UHGV-0029068_43	UniRef90_UPI000B10EF5E	109.0	1.1e-27	minor capsid protein	N/A
eggNOG-mapper	UHGV-0029068_43	718252.FP2_06630	108.0	2.62e-28	Minor capsid protein	N/A
Pfam	UHGV-0029068_43	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0029068_43	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0029068_44	phrog_3266	115.4	2.8e-34	tail completion	connector
UniRef90	UHGV-0029068_44	UniRef90_UPI001F2730AA	117.0	8.47e-31	chloramphenicol resistance protein	N/A
eggNOG-mapper	UHGV-0029068_44	632245.CLP_1653	98.2	3.84e-24	N/A	N/A
structural_annotation	UHGV-0029068_44	PF12691	N/A	N/A	N/A	N/A
UniRef90	UHGV-0029068_45	UniRef90_A0A174M1L1	101.0	3.91e-23	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0029068_45	411461.DORFOR_01172	101.0	8.21e-25	N/A	N/A
structural_annotation	UHGV-0029068_45	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0029068_46	PF20378	N/A	N/A	N/A	N/A
PHROG	UHGV-0029068_47	phrog_706	113.5	1.6e-33	N/A	unknown function
UniRef90	UHGV-0029068_47	UniRef90_UPI0011AF1F88	121.0	5.46e-31	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0029068_47	663278.Ethha_0101	92.4	1.23e-20	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0029068_47	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0029068_47	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0029068_48	phrog_1686	89.5	3e-26	tail length tape measure protein	tail
UniRef90	UHGV-0029068_48	UniRef90_UPI001C038824	347.0	0	tape measure protein	N/A
eggNOG-mapper	UHGV-0029068_48	411470.RUMGNA_02228	130.0	1.27e-28	tape measure	N/A
Pfam	UHGV-0029068_48	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0029068_48	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0029068_48	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0029068_48	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0029068_49	phrog_33	61.7	1.8e-17	distal tail protein Dit	tail
UniRef90	UHGV-0029068_49	UniRef90_R6N293	100.0	5.95e-22	Putative phage tail component domain protein	N/A
structural_annotation	UHGV-0029068_49	PF20753,PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0029068_50	phrog_18110	62.0	6.7e-18	N/A	unknown function
UniRef90	UHGV-0029068_50	UniRef90_A0A1Y3TWK1	186.0	0	Prophage_tail domain-containing protein	N/A
Pfam	UHGV-0029068_50	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
COG	UHGV-0029068_50	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0029068_50	PF06605,PF18994,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0029068_51	phrog_16313	66.9	1.1e-19	virion structural protein	head and packaging
KOfam	UHGV-0029068_52	K07273	164.4	0	acm; lysozyme	N/A
PHROG	UHGV-0029068_52	phrog_291	131.6	7.3e-39	endolysin	lysis
UniRef90	UHGV-0029068_52	UniRef90_UPI001D0EE7D8	259.0	0	glycoside hydrolase family 25 protein	N/A
eggNOG-mapper	UHGV-0029068_52	748224.HMPREF9436_00154	244.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0029068_52	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0029068_52	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0029068_52	PF01183,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0029068_53	phrog_1863	73.3	2e-21	N/A	unknown function
eggNOG-mapper	UHGV-0029068_53	748224.HMPREF9436_00408	109.0	1.15e-30	N/A	N/A
PHROG	UHGV-0029068_54	phrog_263	85.7	3.4e-25	holin	lysis
UniRef90	UHGV-0029068_54	UniRef90_A0A329UCA4	105.0	4.45e-28	Phage holin	N/A
eggNOG-mapper	UHGV-0029068_54	411483.FAEPRAA2165_00003	100.0	7.15e-27	SPP1 phage holin	N/A
Pfam	UHGV-0029068_54	PF04688	N/A	N/A	SPP1 phage holin	Holin_SPP1
NCBIFam	UHGV-0029068_54	TIGR01592.1	N/A	N/A	phage holin	N/A
structural_annotation	UHGV-0029068_54	PF04688,TIGR01592	N/A	N/A	N/A	N/A
KOfam	UHGV-0029068_55	K24213	80.2	1.5e-23	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	N/A
PHROG	UHGV-0029068_55	phrog_5073	78.9	6.9e-23	tail fiber protein	tail
eggNOG-mapper	UHGV-0029068_55	411483.FAEPRAA2165_00757	160.0	4.11001e-41	N/A	N/A
Pfam	UHGV-0029068_55	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
structural_annotation	UHGV-0029068_55	PF16640	N/A	N/A	N/A	N/A
UniRef90	UHGV-0029068_59	UniRef90_A0A1Q9JGI6	97.4	3.57e-23	RHH_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0029068_59	1033733.CAEK01000007_gene1628	103.0	2.45e-26	N/A	N/A
structural_annotation	UHGV-0029068_59	PF03869,NF041793,COG4691	N/A	N/A	N/A	N/A
PHROG	UHGV-0029068_64	phrog_16490	54.0	8.2e-16	N/A	unknown function
eggNOG-mapper	UHGV-0029068_64	476272.RUMHYD_01770	57.8	0.000000168	N/A	N/A
structural_annotation	UHGV-0029068_65	PF18573,NF033147	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0029068	Yes	40,380	54	100	1
UHGV-0033182	No	40,551	54	100	1