vOTU vOTU-044023

vOTU: vOTU-044023

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-044023
Number of genomes	2
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00250 → vSUBFAM-05965 → vGENUS-14141 → vSUBGEN-23463 → vOTU-044023
Host lineage	Archaea → Thermoplasmatota → Thermoplasmata → Methanomassiliicoccales → Methanomethylophilaceae → UBA71 → UBA71 sp002504495
Host range breadth	Species
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-0029914
Biosample ID	N/A
Genome length (bp)	37,860 bps
CheckV completeness	100.00% (Complete)
CDS count	64
CDS density	92.68%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Archaea → Thermoplasmatota → Thermoplasmata → Methanomassiliicoccales → Methanomethylophilaceae → UBA71 → UBA71 sp002504495	Total connections	30	Host agreement	100
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0029914_1	phrog_1535	53.7	1.6e-16	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0029914_1	1232449.BAHV02000010_gene2723	69.3	0.000000000361	domain protein	N/A
COG	UHGV-0029914_1	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0029914_2	phrog_1194	49.2	0.000000000000077	N/A	unknown function
structural_annotation	UHGV-0029914_2	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0029914_3	phrog_13879	94.2	1.8e-31	N/A	unknown function
KOfam	UHGV-0029914_5	K13276	61.4	6.4e-18	bpr; bacillopeptidase F [EC:3.4.21.-]	N/A
PHROG	UHGV-0029914_5	phrog_11157	206.1	0	N/A	unknown function
UniRef90	UHGV-0029914_5	UniRef90_A0A843IMB0	280.0	0	Ig-like domain repeat protein	N/A
eggNOG-mapper	UHGV-0029914_5	33035.JPJF01000023_gene3227	255.0	0	N/A	N/A
Pfam	UHGV-0029914_5	PF09136	N/A	N/A	Glucodextranase, domain B	Glucodextran_B
COG	UHGV-0029914_5	COG3292	N/A	N/A	Periplasmic ligand-binding sensor domain	N/A
structural_annotation	UHGV-0029914_5	PF09136,PF13205,PF13754,MF_04116,NF032891,COG2372,COG5456	N/A	N/A	N/A	N/A
UniRef90	UHGV-0029914_6	UniRef90_UPI00164D9DD8	55.5	0.000000187	PF13754 domain-containing protein	N/A
Pfam	UHGV-0029914_6	PF13754	N/A	N/A	N/A	Big_3_4
PHROG	UHGV-0029914_10	phrog_5302	97.1	1.2e-28	tail protein	tail
structural_annotation	UHGV-0029914_10	PF03781,COG1262	N/A	N/A	N/A	N/A
KOfam	UHGV-0029914_11	K00986	164.8	0	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-0029914_11	phrog_1423	291.1	0	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0029914_11	UniRef90_A0A6B9TAX9	370.0	0	Reverse transcriptase	N/A
eggNOG-mapper	UHGV-0029914_11	1031288.AXAA01000043_gene1778	254.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
PADLOC	UHGV-0029914_11	icity0040	118.6	8.7e-35	RT (reverse transcriptase)	CRISPR-CAS
Pfam	UHGV-0029914_11	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
COG	UHGV-0029914_11	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-0029914_11	PF00078,MF_01390,TIGR04416,COG3344	N/A	N/A	N/A	N/A
Pfam	UHGV-0029914_12	PF16778	N/A	N/A	Phage tail assembly chaperone protein	Phage_tail_APC
PHROG	UHGV-0029914_13	phrog_16490	78.2	1.1e-22	N/A	unknown function
eggNOG-mapper	UHGV-0029914_13	762968.HMPREF9441_00555	58.5	0.000000599	N/A	N/A
Pfam	UHGV-0029914_15	PF09479	N/A	N/A	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
Pfam	UHGV-0029914_20	PF00583	N/A	N/A	Acetyltransferase (GNAT) family	Acetyltransf_1
COG	UHGV-0029914_20	COG0454	N/A	N/A	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	N/A
structural_annotation	UHGV-0029914_20	PF12568,MF_02210,TIGR01575,COG2388	N/A	N/A	N/A	N/A
KOfam	UHGV-0029914_21	K04763	123.6	2.2e-36	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0029914_21	phrog_1	112.0	6.8e-33	integrase	integration and excision
UniRef90	UHGV-0029914_21	UniRef90_A0A6B9T8W0	158.0	4.86251e-43	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0029914_21	1054217.TALC_00879	110.0	1.89e-24	Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules	N/A
Pfam	UHGV-0029914_21	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0029914_21	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0029914_21	PF00589,MF_01808,NF003462,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0029914_24	phrog_155	50.6	0.000000000000027	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
Pfam	UHGV-0029914_24	PF04404	N/A	N/A	ERF superfamily	ERF
COG	UHGV-0029914_24	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
KOfam	UHGV-0029914_40	K03465	211.8	0	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	N/A
PHROG	UHGV-0029914_40	phrog_85	151.5	4.2039e-45	thymidylate synthase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0029914_40	UniRef90_A0A2H9MLC5	192.0	0	Flavin-dependent thymidylate synthase	N/A
eggNOG-mapper	UHGV-0029914_40	1236689.MMALV_16220	185.0	0	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	N/A
Pfam	UHGV-0029914_40	PF02511	N/A	N/A	Thymidylate synthase complementing protein	Thy1
NCBIFam	UHGV-0029914_40	TIGR02170.1	N/A	N/A	FAD-dependent thymidylate synthase	N/A
COG	UHGV-0029914_40	COG1351	N/A	N/A	Thymidylate synthase ThyX, FAD-dependent family	N/A
HAMAP	UHGV-0029914_40	MF_01408	N/A	N/A	Flavin-dependent thymidylate synthase [thyX]	N/A
structural_annotation	UHGV-0029914_40	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
Pfam	UHGV-0029914_41	PF09339	N/A	N/A	IclR helix-turn-helix domain	HTH_IclR
KOfam	UHGV-0029914_42	K01520	96.0	4.6e-28	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-0029914_42	phrog_135	105.8	3.6e-31	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0029914_42	UniRef90_A0A7T0PAF2	96.7	3.61e-23	dUTP diphosphatase	N/A
eggNOG-mapper	UHGV-0029914_42	1035196.HMPREF9998_00926	90.5	2.02e-21	dUTPase	N/A
Pfam	UHGV-0029914_42	PF00692	N/A	N/A	dUTPase	dUTPase
COG	UHGV-0029914_42	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-0029914_42	PF00692,MF_00116,NF001862,COG0756	N/A	N/A	N/A	N/A
KOfam	UHGV-0029914_47	K03497	71.5	1.3e-20	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0029914_47	phrog_21498	243.2	0	N/A	unknown function
UniRef90	UHGV-0029914_47	UniRef90_A0A7X2P836	291.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0029914_47	469378.Ccur_02830	213.0	0	DNA binding	N/A
PADLOC	UHGV-0029914_47	MTase_II_00015	89.5	4.7e-26	Type II methyltransferase	RM
Pfam	UHGV-0029914_47	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0029914_47	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0029914_47	PF02195,PF05869,MF_02015,TIGR00180,TIGR01712,COG5119	N/A	N/A	N/A	N/A
KOfam	UHGV-0029914_51	K06909	85.5	7.6e-25	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0029914_51	phrog_2	104.1	2.1e-30	terminase large subunit	head and packaging
UniRef90	UHGV-0029914_51	UniRef90_A0A843IGX0	657.0	0	Terminase family protein	N/A
eggNOG-mapper	UHGV-0029914_51	1415774.U728_837	206.0	0	phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0029914_51	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0029914_51	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0029914_51	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0029914_52	phrog_64	291.2	0	portal protein	head and packaging
UniRef90	UHGV-0029914_52	UniRef90_A0A843IEY6	447.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0029914_52	1121947.AUHK01000002_gene930	181.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0029914_52	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-0029914_52	TIGR01538.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-0029914_52	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0029914_53	phrog_115	170.3	0	minor head protein	head and packaging
UniRef90	UHGV-0029914_53	UniRef90_A0A843IPG1	237.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0029914_53	1035196.HMPREF9998_01276	96.3	2.68e-19	Phage Mu protein F like protein	N/A
Pfam	UHGV-0029914_53	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-0029914_53	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-0029914_53	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0029914_53	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0029914_54	phrog_172	51.1	0.000000000000029	head scaffolding protein	head and packaging
Pfam	UHGV-0029914_54	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-0029914_54	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0029914_55	phrog_422	113.2	2.3e-33	major head protein	head and packaging
eggNOG-mapper	UHGV-0029914_55	1230342.CTM_21658	72.0	0.00000000000972	N/A	N/A
structural_annotation	UHGV-0029914_55	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0029914_56	TIGR01560	N/A	N/A	N/A	N/A
Pfam	UHGV-0029914_57	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
PHROG	UHGV-0029914_58	phrog_5	63.4	4.8e-18	tail completion or Neck1 protein	connector
UniRef90	UHGV-0029914_58	UniRef90_A0A843IMB8	68.2	0.0000000000121	HK97 gp10 family phage protein	N/A
Pfam	UHGV-0029914_58	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
PHROG	UHGV-0029914_60	phrog_158	61.6	1.5e-17	major tail protein	tail
UniRef90	UHGV-0029914_60	UniRef90_D2IZU5	54.7	0.00000205	Tail protein	N/A
eggNOG-mapper	UHGV-0029914_60	673837.D2IZU5_9CAUD	54.7	0.000000343	N/A	N/A
structural_annotation	UHGV-0029914_60	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0029914_61	411459.RUMOBE_00069	49.3	0.00000528	Leucine rich repeats (6 copies)	N/A
COG	UHGV-0029914_61	COG3210	N/A	N/A	Large exoprotein involved in heme utilization or adhesion	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0029914	Yes	37,860	63	100	1
UHGV-0020186	No	20,399	62	54	1