vOTU vOTU-044092

vOTU: vOTU-044092

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-044092
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00008 → vSUBFAM-00226 → vGENUS-00138 → vSUBGEN-00146 → vOTU-044092
Host lineage	Bacteria → Firmicutes_C → Negativicutes → Acidaminococcales → Acidaminococcaceae → Phascolarctobacterium_A → Phascolarctobacterium_A succinatutens
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0030766
Biosample ID	SAMEA4765718
Genome length (bp)	46,962 bps
CheckV completeness	100.00% (Complete)
CDS count	64
CDS density	89.89%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_C → Negativicutes → Acidaminococcales → Acidaminococcaceae → Phascolarctobacterium_A → Phascolarctobacterium_A succinatutens	Total connections	462	Host agreement	75.97
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → CAG-272 → CAG-841 → CAG-841 sp018383975	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0030766_2	UniRef90_A0A6N7WVF3	63.5	0.000000000368	Restriction endonuclease subunit S	N/A
PHROG	UHGV-0030766_3	phrog_3878	64.5	1.9e-18	N/A	unknown function
KOfam	UHGV-0030766_6	K22300	43.1	0.0000000000079	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
Pfam	UHGV-0030766_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0030766_6	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0030766_6	PF12844,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0030766_9	phrog_5968	148.2	3.92364e-44	replisome organizer	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0030766_9	UniRef90_R6WTP4	188.0	0	N-terminal phage replisome organizer	N/A
eggNOG-mapper	UHGV-0030766_9	1211817.CCAT010000007_gene1058	127.0	6.44e-32	N-terminal phage replisome organiser (Phage_rep_org_N)	N/A
Pfam	UHGV-0030766_9	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
NCBIFam	UHGV-0030766_9	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
COG	UHGV-0030766_9	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0030766_9	PF09681,TIGR01714,TIGR01446,COG3935	N/A	N/A	N/A	N/A
KOfam	UHGV-0030766_11	K07455	201.2	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0030766_11	phrog_148	210.0	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0030766_11	UniRef90_R6XVK6	357.0	0	Putative phage RecT family protein	N/A
eggNOG-mapper	UHGV-0030766_11	431943.CKL_1895	204.0	0	RecT family	N/A
Pfam	UHGV-0030766_11	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0030766_11	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0030766_11	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0030766_11	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
UniRef90	UHGV-0030766_12	UniRef90_R6WLK2	117.0	1.54e-32	Conserved domain protein	N/A
Pfam	UHGV-0030766_12	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0030766_12	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0030766_12	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0030766_13	phrog_434	332.0	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0030766_13	UniRef90_R6WGP6	595.0	0	Putative phage-type endonuclease	N/A
eggNOG-mapper	UHGV-0030766_13	706434.HMPREF9429_00770	358.0	0	YqaJ viral recombinase family protein	N/A
Pfam	UHGV-0030766_13	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0030766_13	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0030766_13	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0030766_13	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-0030766_14	phrog_14367	66.2	2.4e-19	N/A	unknown function
UniRef90	UHGV-0030766_14	UniRef90_R6WTN1	205.0	0	Peptidoglycan-binding LysM	N/A
eggNOG-mapper	UHGV-0030766_14	1304865.JAGF01000001_gene3736	49.3	0.00000797	PFAM Peptidoglycan-binding lysin domain	N/A
Pfam	UHGV-0030766_14	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-0030766_14	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0030766_14	MF_02014,NF010723,COG1388	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0030766_15	NF041909	N/A	N/A	N/A	N/A
PHROG	UHGV-0030766_16	phrog_6058	70.9	1.1e-20	N/A	unknown function
UniRef90	UHGV-0030766_16	UniRef90_A0A0U9H7T0	56.6	0.0000000048	Modification methylase SinI	N/A
eggNOG-mapper	UHGV-0030766_16	1280689.AUJC01000011_gene1497	66.2	0.000000000000144	N/A	N/A
structural_annotation	UHGV-0030766_16	PF12728,TIGR01764	N/A	N/A	N/A	N/A
KOfam	UHGV-0030766_18	K18830	60.6	3.6e-17	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0030766_18	phrog_8	48.0	0.00000000000023	transcriptional regulator	transcription regulation
UniRef90	UHGV-0030766_18	UniRef90_R6X1Y8	176.0	0	Helix-turn-helix domain protein	N/A
eggNOG-mapper	UHGV-0030766_18	641107.CDLVIII_1309	87.8	8.7e-21	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0030766_18	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0030766_18	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0030766_18	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0030766_20	K14059	124.5	1.4e-36	int; integrase	N/A
PHROG	UHGV-0030766_20	phrog_1	138.9	4.60004e-41	integrase	integration and excision
UniRef90	UHGV-0030766_20	UniRef90_R6X1Y3	672.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0030766_20	1123250.KB908381_gene1631	331.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0030766_20	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0030766_20	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0030766_20	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0030766_21	UniRef90_A0A7M1RTM1	95.1	1.51e-21	RNA polymerase sigma factor/ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0030766_21	1378168.N510_03079	59.7	0.0000000148	N/A	N/A
structural_annotation	UHGV-0030766_22	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0030766_23	phrog_16490	86.0	1.2e-25	N/A	unknown function
eggNOG-mapper	UHGV-0030766_23	445972.ANACOL_01880	81.6	9.02e-16	N/A	N/A
eggNOG-mapper	UHGV-0030766_24	476272.RUMHYD_01953	49.7	0.00000062	N/A	N/A
PHROG	UHGV-0030766_25	phrog_21718	45.9	0.00000000000095	N/A	unknown function
eggNOG-mapper	UHGV-0030766_29	1392502.JNIO01000008_gene1280	226.0	0	N/A	N/A
structural_annotation	UHGV-0030766_29	PF21277	N/A	N/A	N/A	N/A
PHROG	UHGV-0030766_31	phrog_4105	83.4	1.8e-24	N/A	unknown function
eggNOG-mapper	UHGV-0030766_31	537013.CLOSTMETH_01753	77.0	6.84e-17	N/A	N/A
PHROG	UHGV-0030766_32	phrog_2837	65.0	1.1e-18	tail protein	tail
UniRef90	UHGV-0030766_32	UniRef90_A0A1Q6R2G9	196.0	0	N/A	N/A
eggNOG-mapper	UHGV-0030766_32	1286631.X805_38770	68.2	0.0000000000101	N/A	N/A
Pfam	UHGV-0030766_32	PF14301	N/A	N/A	N/A	DUF4376
structural_annotation	UHGV-0030766_32	PF14301,COG1382	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0030766_33	PF16116	N/A	N/A	N/A	N/A
KOfam	UHGV-0030766_34	K19721	47.2	0.000000000000065	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	N/A
PHROG	UHGV-0030766_34	phrog_21765	83.5	6.4e-27	N/A	unknown function
eggNOG-mapper	UHGV-0030766_34	1123288.SOV_1c10770	84.0	0.000000000000138	Right handed beta helix region	N/A
COG	UHGV-0030766_34	COG5434	N/A	N/A	Polygalacturonase	N/A
structural_annotation	UHGV-0030766_34	PF03906	N/A	N/A	N/A	N/A
PHROG	UHGV-0030766_35	phrog_9880	516.7	0	N/A	unknown function
UniRef90	UHGV-0030766_35	UniRef90_A0A1Q6RQR6	4330.0	0	LPD3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0030766_35	1123288.SOV_1c10750	179.0	6.14049e-42	N/A	N/A
Pfam	UHGV-0030766_35	PF18798	N/A	N/A	Large polyvalent protein-associated domain 3	LPD3
PHROG	UHGV-0030766_36	phrog_10475	45.8	0.00000000000044	endolysin	lysis
UniRef90	UHGV-0030766_36	UniRef90_A0A1Q6RQM5	1028.0	0	SLT domain-containing protein	N/A
eggNOG-mapper	UHGV-0030766_36	1123288.SOV_2c10740	196.0	0	N/A	N/A
Pfam	UHGV-0030766_36	PF01464	N/A	N/A	Transglycosylase SLT domain	SLT
structural_annotation	UHGV-0030766_36	PF01464,COG0741	N/A	N/A	N/A	N/A
PHROG	UHGV-0030766_37	phrog_418	127.9	2.1e-38	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0030766_37	568816.Acin_1826	105.0	3.54e-25	N/A	N/A
structural_annotation	UHGV-0030766_37	PF16789,TIGR02971,COG3524	N/A	N/A	N/A	N/A
PHROG	UHGV-0030766_38	phrog_308	106.8	1.7e-31	internal virion protein	head and packaging
structural_annotation	UHGV-0030766_38	PF13420,MF_02210,NF011709,COG1247	N/A	N/A	N/A	N/A
PHROG	UHGV-0030766_39	phrog_376	606.5	0	tail protein	tail
UniRef90	UHGV-0030766_39	UniRef90_A0A0U1KV93	350.0	0	N/A	N/A
eggNOG-mapper	UHGV-0030766_39	568816.Acin_1828	673.0	0	N/A	N/A
structural_annotation	UHGV-0030766_39	PF11134,MF_00923,TIGR03300,COG2706	N/A	N/A	N/A	N/A
PHROG	UHGV-0030766_40	phrog_394	156.5	0	tail protein	tail
UniRef90	UHGV-0030766_40	UniRef90_A0A0U1KW64	125.0	9.16e-33	N/A	N/A
eggNOG-mapper	UHGV-0030766_40	1123288.SOV_1c10710	125.0	1.54e-33	N/A	N/A
structural_annotation	UHGV-0030766_40	PF17212	N/A	N/A	N/A	N/A
PHROG	UHGV-0030766_41	phrog_427	65.0	1.1e-18	N/A	unknown function
structural_annotation	UHGV-0030766_41	PF21190	N/A	N/A	N/A	N/A
PHROG	UHGV-0030766_42	phrog_212	206.2	0	major head protein	head and packaging
UniRef90	UHGV-0030766_42	UniRef90_A0A6J5KPX9	218.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-0030766_42	568816.Acin_1831	352.0	0	N/A	N/A
Pfam	UHGV-0030766_42	PF20911	N/A	N/A	Major capsid protein GP7	GP7
structural_annotation	UHGV-0030766_42	PF20911,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0030766_43	phrog_458	151.5	5.60519e-45	protease	other
eggNOG-mapper	UHGV-0030766_43	568816.Acin_1832	96.7	7.56e-22	N/A	N/A
PHROG	UHGV-0030766_44	phrog_528	105.7	1.5e-31	N/A	unknown function
eggNOG-mapper	UHGV-0030766_44	1401067.HMPREF0872_06805	94.0	3.39e-23	N/A	N/A
PHROG	UHGV-0030766_45	phrog_332	440.1	0	head-tail adaptor	connector
UniRef90	UHGV-0030766_45	UniRef90_UPI001F3F9DD9	544.0	0	portal protein	N/A
eggNOG-mapper	UHGV-0030766_45	568816.Acin_1834	605.0	0	Bacteriophage head to tail connecting protein	N/A
Pfam	UHGV-0030766_45	PF12236	N/A	N/A	Bacteriophage head to tail connecting protein	Head-tail_con
structural_annotation	UHGV-0030766_45	PF12236,MF_04120,TIGR01538,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0030766_47	K06909	86.6	3.6e-25	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0030766_47	phrog_2	161.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0030766_47	UniRef90_UPI001D00EC11	401.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0030766_47	568816.Acin_1836	417.0	0	Terminase RNaseH-like domain	N/A
Pfam	UHGV-0030766_47	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0030766_47	COG0507	N/A	N/A	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-0030766_47	PF03237,PF17289,MF_04146,TIGR01547,COG4373	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0030766_49	PF20075,TIGR03070,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0030766_50	PF13983	N/A	N/A	N/A	N/A
PHROG	UHGV-0030766_52	phrog_15863	289.3	0	N/A	unknown function
UniRef90	UHGV-0030766_52	UniRef90_R6WLL6	599.0	0	Cytochrome c domain-containing protein	N/A
eggNOG-mapper	UHGV-0030766_52	693746.OBV_01780	127.0	5.51e-33	DnaJ molecular chaperone homology domain	N/A
COG	UHGV-0030766_52	COG2214	N/A	N/A	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	N/A
PHROG	UHGV-0030766_53	phrog_35696	61.3	2.1e-17	N/A	unknown function
structural_annotation	UHGV-0030766_57	NF009753,COG2608	N/A	N/A	N/A	N/A
KOfam	UHGV-0030766_59	K03111	54.6	0.0000000000000028	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0030766_59	phrog_44	59.9	7.1e-17	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0030766_59	UniRef90_A0A1Q6RQK6	248.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0030766_59	641112.ACOK01000116_gene2637	62.0	0.000000000172	Single-strand binding protein family	N/A
Pfam	UHGV-0030766_59	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0030766_59	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0030766_59	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0030766_59	PF00436,MF_00984,TIGR00621,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0030766_60	K01160	59.3	1.1e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0030766_60	phrog_140	136.1	1.7e-40	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0030766_60	UniRef90_A0A316S9J1	144.0	1.23006e-41	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0030766_60	743719.PaelaDRAFT_5642	125.0	3.12e-35	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0030766_60	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0030766_60	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0030766_60	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0030766_62	PF16857,MF_00273,NF001981,COG2157	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0030766	Yes	46,962	45	100	1