vOTU vOTU-044147

vOTU: vOTU-044147

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-044147
Number of genomes	5
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00013 → vGENUS-09937 → vSUBGEN-12397 → vOTU-044147
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0031572
Biosample ID	N/A
Genome length (bp)	41,507 bps
CheckV completeness	100.00% (Complete)
CDS count	70
CDS density	90.27%
tRNA count	2
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	731	Host agreement	97.4
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0031572_1	phrog_27197	83.0	6.9e-26	N/A	unknown function
eggNOG-mapper	UHGV-0031572_1	394503.Ccel_3068	53.5	0.000000692	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0031572_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0031572_1	NF007410	N/A	N/A	N/A	N/A
UniRef90	UHGV-0031572_2	UniRef90_UPI00130EBC54	145.0	4.90454e-44	N/A	N/A
eggNOG-mapper	UHGV-0031572_2	1229751.R9QLK3_9CAUD	48.1	0.00000288	N/A	N/A
structural_annotation	UHGV-0031572_2	PF05339,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0031572_3	PF12270,NF040944	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0031572_4	PF14120	N/A	N/A	N/A	N/A
PHROG	UHGV-0031572_6	phrog_7838	118.8	4e-35	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0031572_6	UniRef90_A0A8D9UGW3	188.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-0031572_6	742767.HMPREF9456_02052	145.0	4.00996e-41	N/A	N/A
structural_annotation	UHGV-0031572_6	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
KOfam	UHGV-0031572_7	K03111	139.8	3.00004e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0031572_7	phrog_44	145.1	3.89561e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0031572_7	UniRef90_D4K451	216.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0031572_7	748224.HMPREF9436_00638	227.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0031572_7	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0031572_7	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0031572_7	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0031572_7	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0031572_7	PF00436,MF_00984,NF005579,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0031572_8	phrog_186	75.3	1e-21	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0031572_8	UniRef90_UPI001C02E649	360.0	0	DnaD domain protein	N/A
eggNOG-mapper	UHGV-0031572_8	718252.FP2_01000	172.0	0	N/A	N/A
Pfam	UHGV-0031572_8	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
Pfam	UHGV-0031572_8	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-0031572_8	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
COG	UHGV-0031572_8	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0031572_8	PF09681,MF_01819,TIGR01714,TIGR01446,COG3935	N/A	N/A	N/A	N/A
PHROG	UHGV-0031572_13	phrog_3136	124.4	3.7e-37	N/A	unknown function
UniRef90	UHGV-0031572_13	UniRef90_UPI001C00EDA4	132.0	3.08e-36	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0031572_13	1235793.C809_02645	54.3	0.00000212	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0031572_13	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0031572_13	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
KOfam	UHGV-0031572_14	K01160	60.4	5.6e-17	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0031572_14	phrog_34	60.1	4.5e-17	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0031572_14	UniRef90_A0A6N7TND6	221.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0031572_14	875454.BAEW01000002_gene491	136.0	8.95e-40	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0031572_14	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0031572_14	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0031572_14	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0031572_15	PF14354	N/A	N/A	N/A	N/A
UniRef90	UHGV-0031572_16	UniRef90_A0A6N7TNN9	58.9	0.0000000566	N/A	N/A
structural_annotation	UHGV-0031572_16	PF07374	N/A	N/A	N/A	N/A
UniRef90	UHGV-0031572_17	UniRef90_UPI0018CC2891	120.0	6.4e-32	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0031572_17	1235790.C805_00037	111.0	5.2e-29	N/A	N/A
structural_annotation	UHGV-0031572_17	PF04218	N/A	N/A	N/A	N/A
KOfam	UHGV-0031572_18	K06909	143.2	2.29953e-42	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0031572_18	phrog_10250	177.0	0	N/A	unknown function
UniRef90	UHGV-0031572_18	UniRef90_A0A844D8I4	837.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0031572_18	411490.ANACAC_00783	493.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0031572_18	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-0031572_18	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-0031572_18	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0031572_18	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0031572_18	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0031572_19	phrog_64	130.6	5.7e-39	portal protein	head and packaging
UniRef90	UHGV-0031572_19	UniRef90_A0A6N7TNT3	886.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0031572_19	642492.Clole_2764	84.7	0.00000000000000997	phage portal protein, SPP1	N/A
Pfam	UHGV-0031572_19	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0031572_19	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0031572_21	phrog_2468	80.6	1.1e-23	head morphogenesis	head and packaging
UniRef90	UHGV-0031572_21	UniRef90_A0A6N7TLR7	600.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0031572_21	1443125.Z962_05660	83.6	0.00000000000000783	Phage Mu protein F like protein	N/A
Pfam	UHGV-0031572_21	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0031572_21	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0031572_21	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0031572_23	phrog_5	45.9	0.0000000000012	tail completion or Neck1 protein	connector
UniRef90	UHGV-0031572_23	UniRef90_A0A6N7TNP6	285.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0031572_23	1123309.AQYB01000018_gene814	90.9	2.25e-21	Bacteriophage HK97-gp10, putative tail-component	N/A
structural_annotation	UHGV-0031572_23	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
UniRef90	UHGV-0031572_24	UniRef90_A0A3A9HXZ9	84.0	2.85e-20	CopG family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0031572_24	1235800.C819_00492	81.6	4.04e-20	N/A	N/A
structural_annotation	UHGV-0031572_24	PF01402,COG4710	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0031572_25	PF07342	N/A	N/A	N/A	N/A
PHROG	UHGV-0031572_26	phrog_374	240.9	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0031572_26	UniRef90_A0A380IPI2	205.0	0	AP2 domain protein	N/A
eggNOG-mapper	UHGV-0031572_26	742767.HMPREF9456_02044	200.0	0	N/A	N/A
PHROG	UHGV-0031572_28	phrog_544	138.4	5.40004e-41	major head protein	head and packaging
UniRef90	UHGV-0031572_28	UniRef90_R0BKA1	438.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0031572_28	476272.RUMHYD_01776	318.0	0	N/A	N/A
structural_annotation	UHGV-0031572_28	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0031572_30	phrog_17977	42.5	0.0000000000096	N/A	unknown function
UniRef90	UHGV-0031572_30	UniRef90_A0A844DHJ8	125.0	6.04e-35	Phage head closure protein	N/A
structural_annotation	UHGV-0031572_30	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0031572_31	PF13554	N/A	N/A	N/A	N/A
PHROG	UHGV-0031572_32	phrog_885	64.2	1.6e-18	major tail protein	tail
eggNOG-mapper	UHGV-0031572_32	1111121.HMPREF1247_0789	109.0	3.12e-27	N/A	N/A
structural_annotation	UHGV-0031572_32	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0031572_35	phrog_9959	103.6	1.2e-30	tail length tape measure protein	tail
UniRef90	UHGV-0031572_35	UniRef90_A0A6N7TLD3	989.0	0	Tape measure protein	N/A
eggNOG-mapper	UHGV-0031572_35	1492737.FEM08_12070	140.0	8.42e-32	tape measure	N/A
Pfam	UHGV-0031572_35	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0031572_35	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0031572_35	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0031572_35	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
UniRef90	UHGV-0031572_36	UniRef90_A0A417QGC1	115.0	1.23e-27	MtfA protein	N/A
eggNOG-mapper	UHGV-0031572_36	411490.ANACAC_00709	98.2	5.98e-22	phage tail	N/A
COG	UHGV-0031572_36	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0031572_36	PF05709,PF02408,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0031572_37	phrog_3558	189.7	0	tail protein	tail
eggNOG-mapper	UHGV-0031572_37	610130.Closa_0754	70.1	0.000000000982	N/A	N/A
Pfam	UHGV-0031572_37	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
COG	UHGV-0031572_37	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0031572_37	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0031572_38	phrog_9534	43.5	0.0000000000041	head protein	head and packaging
eggNOG-mapper	UHGV-0031572_38	748224.HMPREF9436_01407	159.0	1.70958e-42	COG NOG18825 non supervised orthologous group	N/A
PHROG	UHGV-0031572_40	phrog_1382	49.1	0.000000000000033	N/A	unknown function
eggNOG-mapper	UHGV-0031572_40	411468.CLOSCI_00272	47.0	0.00000162	N/A	N/A
KOfam	UHGV-0031572_41	K07273	174.5	0	acm; lysozyme	N/A
PHROG	UHGV-0031572_41	phrog_291	144.7	7.49695e-43	endolysin	lysis
UniRef90	UHGV-0031572_41	UniRef90_E2ZES5	343.0	0	Glycosyl hydrolase family 25	N/A
eggNOG-mapper	UHGV-0031572_41	748224.HMPREF9436_00154	343.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0031572_41	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0031572_41	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0031572_41	PF01183,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0031572_43	phrog_15303	110.4	8.7e-33	N/A	unknown function
Pfam	UHGV-0031572_43	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
KOfam	UHGV-0031572_44	K24213	73.8	1.6e-21	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	N/A
PHROG	UHGV-0031572_44	phrog_5073	78.9	4.7e-23	tail fiber protein	tail
UniRef90	UHGV-0031572_44	UniRef90_UPI0018835F0C	578.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-0031572_44	411483.FAEPRAA2165_00757	174.0	0	N/A	N/A
Pfam	UHGV-0031572_44	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
structural_annotation	UHGV-0031572_44	PF10651	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0031572_46	PF07374,MF_00245,NF001072,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0031572_47	phrog_3754	95.8	4.4e-28	N/A	unknown function
eggNOG-mapper	UHGV-0031572_47	1235790.C805_00054	111.0	4.56e-30	N/A	N/A
PHROG	UHGV-0031572_48	phrog_21718	118.0	6.8e-35	N/A	unknown function
eggNOG-mapper	UHGV-0031572_48	397290.C810_05210	97.1	2.14e-23	N/A	N/A
PHROG	UHGV-0031572_49	phrog_22984	85.3	4.3e-25	N/A	unknown function
PHROG	UHGV-0031572_50	phrog_16490	145.1	3.79752e-43	N/A	unknown function
eggNOG-mapper	UHGV-0031572_50	1408437.JNJN01000043_gene803	118.0	1.93e-29	N/A	N/A
PHROG	UHGV-0031572_52	phrog_20016	197.7	0	N/A	unknown function
UniRef90	UHGV-0031572_52	UniRef90_A0A285PT46	210.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0031572_52	1226322.HMPREF1545_00077	180.0	0	N/A	N/A
structural_annotation	UHGV-0031572_52	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0031572_53	PF12510	N/A	N/A	N/A	N/A
KOfam	UHGV-0031572_55	K14059	125.8	5.5e-37	int; integrase	N/A
PHROG	UHGV-0031572_55	phrog_1	107.7	1.3e-31	integrase	integration and excision
UniRef90	UHGV-0031572_55	UniRef90_E2ZNV1	739.0	0	Site-specific recombinase, phage integrase family	N/A
eggNOG-mapper	UHGV-0031572_55	748224.HMPREF9436_03382	739.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0031572_55	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0031572_55	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0031572_55	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0031572_55	PF00589,PF14659,MF_01808,NF007246,COG4973	N/A	N/A	N/A	N/A
KOfam	UHGV-0031572_56	K15773	41.3	0.000000000028	hipB; HTH-type transcriptional regulator / antitoxin HipB	N/A
UniRef90	UHGV-0031572_56	UniRef90_A0A6N7TLT0	343.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0031572_56	266265.Bxe_A3948	54.3	0.000000178	Helix-turn-helix domain	N/A
Pfam	UHGV-0031572_56	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0031572_56	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0031572_56	PF13560,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0031572_59	1123037.AUDE01000011_gene922	95.5	4.64e-20	N/A	N/A
structural_annotation	UHGV-0031572_59	COG5342	N/A	N/A	N/A	N/A
KOfam	UHGV-0031572_61	K22300	61.4	2e-17	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0031572_61	phrog_2967	47.7	0.00000000000021	transcriptional regulator	transcription regulation
UniRef90	UHGV-0031572_61	UniRef90_A0A844DFR0	241.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0031572_61	748224.HMPREF9436_01444	173.0	0	N/A	N/A
PADLOC	UHGV-0031572_61	retron_type_VI_hth_cluster2_1	40.6	0.000000000036	N/A	Retron
Pfam	UHGV-0031572_61	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0031572_61	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0031572_61	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0031572_67	phrog_2593	82.3	4.7e-24	anti-repressor	transcription regulation
UniRef90	UHGV-0031572_67	UniRef90_UPI001C2426FA	149.0	3.91e-40	phage antirepressor Ant	N/A
eggNOG-mapper	UHGV-0031572_67	698769.JFBD01000002_gene2778	148.0	2.95e-40	BRO family, N-terminal domain	N/A
Pfam	UHGV-0031572_67	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
COG	UHGV-0031572_67	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-0031572_67	PF02498,COG3617	N/A	N/A	N/A	N/A
KOfam	UHGV-0031572_68	K17080	80.4	7.5e-24	PHB1; prohibitin 1	N/A
PHROG	UHGV-0031572_68	phrog_200	158.4	0	lipoprotein	other
UniRef90	UHGV-0031572_68	UniRef90_D4KCF4	382.0	0	Membrane protease subunits, stomatin/prohibitin homologs	N/A
eggNOG-mapper	UHGV-0031572_68	657322.FPR_23460	382.0	0	prohibitin homologues	N/A
Pfam	UHGV-0031572_68	PF01145	N/A	N/A	SPFH domain / Band 7 family	Band_7
COG	UHGV-0031572_68	COG0330	N/A	N/A	Regulator of protease activity HflC, stomatin/prohibitin superfamily	N/A
structural_annotation	UHGV-0031572_68	PF01145,MF_01562,NF008181,COG0330	N/A	N/A	N/A	N/A
PHROG	UHGV-0031572_70	phrog_4433	124.8	7.6e-37	N/A	unknown function
UniRef90	UHGV-0031572_70	UniRef90_A0A6M5C839	101.0	2.32e-24	Putative ADP-ribosyltransferase	N/A
eggNOG-mapper	UHGV-0031572_70	33035.JPJF01000122_gene2458	106.0	5.88e-26	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0031572_70	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0031572_70	PF12120,NF000066	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0031572	Yes	41,507	55	100	1
UHGV-0031571	No	41,507	55	100	1
UHGV-0023391	No	41,642	55	99	1
UHGV-0027742	No	41,616	55	99	1
UHGV-0024242	No	33,876	55	80	1