vOTU vOTU-044239

vOTU: vOTU-044239

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-044239
Number of genomes	2
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Peptostreptococcales → Peptostreptococcaceae → Paraclostridium → Paraclostridium sordellii
Taxonomy (UHGV)	vFAM-00162 → vSUBFAM-05084 → vGENUS-10234 → vSUBGEN-13154 → vOTU-044239
Host lineage	Bacteria → Firmicutes_A → Clostridia → Peptostreptococcales → Peptostreptococcaceae → Paraclostridium → Paraclostridium sordellii
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0032934
Biosample ID	SAMEA4765934
Genome length (bp)	35,877 bps
CheckV completeness	100.00% (Complete)
CDS count	47
CDS density	83.36%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Peptostreptococcales → Peptostreptococcaceae → Paraclostridium → Paraclostridium sordellii	Total connections	18	Host agreement	94.44
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Peptostreptococcales → Peptostreptococcaceae → Paraclostridium → Paraclostridium sordellii	Total connections	5	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0032934_1	phrog_2172	156.1	0	N/A	unknown function
UniRef90	UHGV-0032934_1	UniRef90_UPI0005E72B81	751.0	0	replication initiation protein	N/A
eggNOG-mapper	UHGV-0032934_1	1391646.AVSU01000126_gene2196	310.0	0	Initiator Replication protein	N/A
Pfam	UHGV-0032934_1	PF01051	N/A	N/A	Initiator Replication protein, WH1	Rep3_N
Pfam	UHGV-0032934_1	PF21205	N/A	N/A	Initiator Rep protein, WH2	Rep3_C
COG	UHGV-0032934_1	COG5527	N/A	N/A	Protein involved in initiation of plasmid replication	N/A
KOfam	UHGV-0032934_2	K03496	155.9	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0032934_2	phrog_164	150.6	9.80909e-45	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032934_2	UniRef90_UPI0005E82A0C	516.0	0	ParA family protein	N/A
eggNOG-mapper	UHGV-0032934_2	1391646.AVSU01000137_gene3339	416.0	0	CobQ CobB MinD ParA nucleotide binding domain protein	N/A
Pfam	UHGV-0032934_2	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0032934_2	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0032934_2	PF13614,MF_00533,NF010443,COG1192	N/A	N/A	N/A	N/A
PHROG	UHGV-0032934_3	phrog_27746	84.6	9.3e-25	N/A	unknown function
eggNOG-mapper	UHGV-0032934_3	1476973.JMMB01000004_gene3397	108.0	7.83e-29	N/A	N/A
UniRef90	UHGV-0032934_4	UniRef90_A0A031WCW5	178.0	0	Spore outer coat layer protein CotA	N/A
eggNOG-mapper	UHGV-0032934_4	272563.CD630_16130	178.0	0	N/A	N/A
NCBIFam	UHGV-0032934_4	NF041648.1	N/A	N/A	CotA family spore coat protein	N/A
PHROG	UHGV-0032934_5	phrog_2937	59.6	4.9e-17	N/A	unknown function
eggNOG-mapper	UHGV-0032934_6	632245.CLP_0413	239.0	0	N/A	N/A
PHROG	UHGV-0032934_8	phrog_38429	58.3	1.1e-16	N/A	unknown function
PHROG	UHGV-0032934_9	phrog_2655	79.0	5.7e-23	excisionase	integration and excision
UniRef90	UHGV-0032934_9	UniRef90_A0A0A1SM88	128.0	1.11e-37	HTH_59 domain-containing protein	N/A
eggNOG-mapper	UHGV-0032934_9	1151292.QEW_4392	92.0	4.88e-24	N/A	N/A
Pfam	UHGV-0032934_9	PF20038	N/A	N/A	Helix-turn-helix domain	HTH_59
structural_annotation	UHGV-0032934_9	PF20038,TIGR01764	N/A	N/A	N/A	N/A
KOfam	UHGV-0032934_10	K01447	128.0	1e-37	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0032934_10	phrog_670	148.6	4.48416e-44	endolysin	lysis
UniRef90	UHGV-0032934_10	UniRef90_UPI0005E5A4EB	431.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0032934_10	573061.Clocel_1232	219.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0032934_10	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0032934_10	COG0438	N/A	N/A	Glycosyltransferase involved in cell wall bisynthesis	N/A
structural_annotation	UHGV-0032934_10	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-0032934_11	phrog_9492	173.6	0	N/A	unknown function
UniRef90	UHGV-0032934_11	UniRef90_UPI0005DAA9CB	288.0	0	cobalt ABC transporter permease	N/A
eggNOG-mapper	UHGV-0032934_11	1391647.AVSV01000021_gene2231	173.0	0	N/A	N/A
PHROG	UHGV-0032934_12	phrog_1193	70.9	1.4e-20	hemolysin	other
UniRef90	UHGV-0032934_12	UniRef90_UPI0005DF27E2	139.0	8.37976e-42	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-0032934_12	1292035.H476_1000	136.0	3.31996e-41	Haemolysin XhlA	N/A
Pfam	UHGV-0032934_12	PF10779	N/A	N/A	Haemolysin XhlA	XhlA
PHROG	UHGV-0032934_13	phrog_134	59.3	4.7e-17	N/A	unknown function
UniRef90	UHGV-0032934_13	UniRef90_UPI0005DB8671	126.0	3.96e-37	XkdX family protein	N/A
Pfam	UHGV-0032934_13	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
NCBIFam	UHGV-0032934_13	TIGR01669.1	N/A	N/A	XkdX family protein	N/A
PHROG	UHGV-0032934_15	phrog_6782	94.9	7.7e-28	tail fiber protein	tail
UniRef90	UHGV-0032934_15	UniRef90_UPI0005E60F6B	1494.0	0	pyocin knob domain-containing protein	N/A
eggNOG-mapper	UHGV-0032934_15	1391647.AVSV01000022_gene2575	63.9	0.0000002	N/A	N/A
Pfam	UHGV-0032934_15	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
PHROG	UHGV-0032934_16	phrog_1067	341.7	0	minor head protein	head and packaging
UniRef90	UHGV-0032934_16	UniRef90_UPI0015F59927	1368.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0032934_16	1292035.H476_1004	858.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0032934_16	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0032934_16	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0032934_16	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0032934_16	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0032934_17	phrog_33	72.9	7.2e-21	distal tail protein Dit	tail
UniRef90	UHGV-0032934_17	UniRef90_UPI0005DE2450	470.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-0032934_17	195103.CPF_1575	150.0	3.12069e-42	tail component	N/A
Pfam	UHGV-0032934_17	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-0032934_17	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0032934_17	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0032934_17	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0032934_18	phrog_991	284.5	0	tail length tape measure protein	tail
UniRef90	UHGV-0032934_18	UniRef90_UPI0005DCDE3C	1318.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0032934_18	190478.Q8SBP1_9CAUD	742.0	0	peptidoglycan catabolic process	N/A
Pfam	UHGV-0032934_18	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0032934_18	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
structural_annotation	UHGV-0032934_18	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0032934_19	phrog_13494	107.0	8.9e-32	N/A	unknown function
UniRef90	UHGV-0032934_19	UniRef90_A0A2X3A6R3	98.6	8.82e-25	Gp12 protein	N/A
eggNOG-mapper	UHGV-0032934_19	195103.CPF_1578	90.1	3.63e-22	N/A	N/A
structural_annotation	UHGV-0032934_19	PF20378	N/A	N/A	N/A	N/A
PHROG	UHGV-0032934_20	phrog_88	138.8	2.89999e-41	major tail protein	tail
UniRef90	UHGV-0032934_20	UniRef90_UPI0005DFFCE8	398.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0032934_20	411459.RUMOBE_01728	198.0	0	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0032934_20	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-0032934_20	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0032934_20	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0032934_21	phrog_78	79.5	4.6e-23	tail terminator	connector
UniRef90	UHGV-0032934_21	UniRef90_T0D5T1	195.0	0	Putative gp10 protein	N/A
eggNOG-mapper	UHGV-0032934_21	195103.CPF_1580	125.0	1.33e-35	N/A	N/A
structural_annotation	UHGV-0032934_21	PF05657,NF040576,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0032934_22	phrog_5	54.2	0.0000000000000038	tail completion or Neck1 protein	connector
UniRef90	UHGV-0032934_22	UniRef90_UPI0005DD3562	285.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0032934_22	195103.CPF_1581	199.0	0	Phage protein, HK97 gp10 family	N/A
NCBIFam	UHGV-0032934_22	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0032934_22	PF04883,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0032934_23	phrog_25	50.4	0.00000000000004	head closure Hc1	connector
UniRef90	UHGV-0032934_23	UniRef90_UPI0005E59FB3	218.0	0	phage head closure protein	N/A
eggNOG-mapper	UHGV-0032934_23	195103.CPF_1582	148.0	5.60519e-45	Phage head-tail adaptor	N/A
Pfam	UHGV-0032934_23	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0032934_23	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0032934_23	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0032934_24	phrog_40	54.0	0.0000000000000023	head-tail adaptor Ad1	connector
UniRef90	UHGV-0032934_24	UniRef90_UPI0005DAB1A7	200.0	0	head-tail connector protein	N/A
eggNOG-mapper	UHGV-0032934_24	447909.A6M953_9VIRU	68.6	0.0000000000000817	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-0032934_24	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
NCBIFam	UHGV-0032934_24	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-0032934_24	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0032934_25	phrog_10	113.3	2.4e-33	major head protein	head and packaging
UniRef90	UHGV-0032934_25	UniRef90_UPI0012D770CE	810.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0032934_25	457396.CSBG_01049	486.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0032934_25	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0032934_25	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0032934_25	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0032934_25	PF05065,PF19962,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0032934_26	K06904	125.0	7.9e-37	N/A	N/A
PHROG	UHGV-0032934_26	phrog_80	147.7	1.09301e-43	head maturation protease	head and packaging
UniRef90	UHGV-0032934_26	UniRef90_UPI0005E2BE9B	414.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0032934_26	1123288.SOV_2c03620	249.0	0	Caudovirus prohead serine protease	N/A
Pfam	UHGV-0032934_26	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0032934_26	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0032934_26	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0032934_26	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0032934_27	phrog_12	156.2	0	portal protein	head and packaging
UniRef90	UHGV-0032934_27	UniRef90_UPI00070B1EF9	788.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0032934_27	1211817.CCAT010000007_gene1039	510.0	0	Portal protein	N/A
Pfam	UHGV-0032934_27	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0032934_27	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0032934_27	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0032934_28	phrog_9	276.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-0032934_28	UniRef90_UPI00097C9F04	1137.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0032934_28	457396.CSBG_01046	791.0	0	Terminase	N/A
Pfam	UHGV-0032934_28	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0032934_28	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0032934_28	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0032934_28	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0032934_29	phrog_1066	58.4	1.3e-16	N/A	unknown function
UniRef90	UHGV-0032934_29	UniRef90_UPI001C80A357	178.0	0	zinc-binding protein	N/A
eggNOG-mapper	UHGV-0032934_29	457396.CSBG_01045	133.0	2.58e-39	N/A	N/A
structural_annotation	UHGV-0032934_29	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
KOfam	UHGV-0032934_30	K07451	45.7	0.0000000000012	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0032934_30	phrog_4581	112.9	1.4e-33	terminase small subunit	head and packaging
UniRef90	UHGV-0032934_30	UniRef90_UPI0005E5108E	487.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0032934_30	1211817.CCAT010000007_gene1042	261.0	0	HNH endonuclease	N/A
Pfam	UHGV-0032934_30	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0032934_30	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0032934_30	PF13671,MF_03171,NF005251,NF008448,COG4639	N/A	N/A	N/A	N/A
PHROG	UHGV-0032934_31	phrog_309	127.2	8.3e-38	terminase small subunit	head and packaging
UniRef90	UHGV-0032934_31	UniRef90_UPI001C80B796	214.0	0	transposase	N/A
eggNOG-mapper	UHGV-0032934_31	1567014.A0A0A7RTX1_9VIRU	160.0	0	N/A	N/A
structural_annotation	UHGV-0032934_31	PF07141	N/A	N/A	N/A	N/A
PHROG	UHGV-0032934_32	phrog_1558	146.6	1.20512e-43	N/A	unknown function
UniRef90	UHGV-0032934_32	UniRef90_A0A174GQI9	107.0	8.94e-27	Sigma-70 region 4 type 2	N/A
eggNOG-mapper	UHGV-0032934_32	1211817.CCAT010000007_gene1046	107.0	3.25e-27	N/A	N/A
structural_annotation	UHGV-0032934_32	PF08281,MF_00674,TIGR01636,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0032934_33	phrog_824	150.3	5.60519e-45	N/A	unknown function
UniRef90	UHGV-0032934_33	UniRef90_UPI000E4B5707	245.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0032934_33	1235792.C808_00622	146.0	3.06044e-42	VRR_NUC	N/A
Pfam	UHGV-0032934_33	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0032934_33	PF08774	N/A	N/A	N/A	N/A
PHROG	UHGV-0032934_36	phrog_986	106.1	1.8e-31	RNA-binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032934_36	UniRef90_UPI0005E6E2F6	264.0	0	N/A	N/A
eggNOG-mapper	UHGV-0032934_36	1211817.CCAT010000049_gene2477	106.0	4.28e-28	N/A	N/A
Pfam	UHGV-0032934_36	PF12961	N/A	N/A	N/A	DUF3850
UniRef90	UHGV-0032934_37	UniRef90_T0D5R2	328.0	0	NUMOD1 domain protein	N/A
PHROG	UHGV-0032934_42	phrog_3584	266.4	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032934_42	UniRef90_A0A4P8IFK4	194.0	0	N/A	N/A
eggNOG-mapper	UHGV-0032934_42	1321814.HMPREF9089_00921	223.0	0	N/A	N/A
structural_annotation	UHGV-0032934_42	PF21578	N/A	N/A	N/A	N/A
KOfam	UHGV-0032934_44	K18830	67.4	9.9e-20	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0032934_44	phrog_8	53.2	0.0000000000000037	transcriptional regulator	transcription regulation
UniRef90	UHGV-0032934_44	UniRef90_UPI0005E5A706	227.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0032934_44	1280698.AUJS01000007_gene1002	68.2	0.000000000000871	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-0032934_44	retron_type_VI_hth_cluster2_1	42.4	0.000000000012	N/A	Retron
Pfam	UHGV-0032934_44	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0032934_44	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0032934_44	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0032934_46	K01356	119.4	4.9e-35	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0032934_46	phrog_3502	57.2	1.8e-16	N/A	unknown function
UniRef90	UHGV-0032934_46	UniRef90_UPI0005DC2761	391.0	0	transcriptional repressor LexA	N/A
eggNOG-mapper	UHGV-0032934_46	1292035.H476_3470	219.0	0	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-0032934_46	PF01726	N/A	N/A	LexA DNA binding domain	LexA_DNA_bind
Pfam	UHGV-0032934_46	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
NCBIFam	UHGV-0032934_46	TIGR00498.1	N/A	N/A	transcriptional repressor LexA	N/A
COG	UHGV-0032934_46	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0032934_46	PF00717,MF_00015,TIGR00498,COG1974	N/A	N/A	N/A	N/A
PHROG	UHGV-0032934_47	phrog_18851	61.0	1.8e-17	N/A	unknown function

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0032934	Yes	35,877	27	100	1
UHGV-0179695	No	29,786	27	81	1