vOTU vOTU-044461

vOTU: vOTU-044461

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-044461
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00605 → vGENUS-00605 → vSUBGEN-38694 → vOTU-044461
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Anaerotignaceae → Metalachnospira → Metalachnospira sp900553995
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0035581
Biosample ID	N/A
Genome length (bp)	42,936 bps
CheckV completeness	100.00% (Complete)
CDS count	65
CDS density	93.88%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Anaerotignaceae → Metalachnospira → Metalachnospira sp900553995	Total connections	5	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0035581_1	phrog_14105	63.1	3.5e-18	N/A	unknown function
eggNOG-mapper	UHGV-0035581_1	573061.Clocel_3578	59.7	0.0000000252	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0035581_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
KOfam	UHGV-0035581_2	K03111	137.0	2.1e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0035581_2	phrog_44	131.0	8.5e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0035581_2	UniRef90_A0A2V2C1N3	214.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0035581_2	97138.C820_02339	176.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0035581_2	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0035581_2	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0035581_2	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0035581_2	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0035581_2	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0035581_3	K02315	138.6	5.49996e-41	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0035581_3	phrog_50	134.4	9.1e-40	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0035581_3	UniRef90_A0A1C6HFV4	181.0	0	DNA replication protein	N/A
eggNOG-mapper	UHGV-0035581_3	445972.ANACOL_01829	152.0	5.77335e-43	N/A	N/A
Pfam	UHGV-0035581_3	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-0035581_3	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0035581_3	PF01695,MF_01158,NF005378,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-0035581_4	phrog_15768	114.6	1e-33	N/A	unknown function
UniRef90	UHGV-0035581_4	UniRef90_A0A0J9CGG0	159.0	1.82169e-44	N/A	N/A
eggNOG-mapper	UHGV-0035581_4	1121344.JHZO01000003_gene982	142.0	4.41e-39	N/A	N/A
AcrCatalog	UHGV-0035581_4	cluster_14472	154.0	0	NA	N/A
Pfam	UHGV-0035581_4	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0035581_4	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-0035581_5	K01160	63.4	6.6e-18	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0035581_5	phrog_140	128.7	3.3e-38	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0035581_5	UniRef90_A0A136WJ13	145.0	3.21037e-42	Endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-0035581_5	411470.RUMGNA_02196	97.1	4.9e-24	COG COG4570 Holliday junction resolvase	N/A
Pfam	UHGV-0035581_5	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0035581_5	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0035581_5	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0035581_6	phrog_7566	93.4	1.3e-27	N/A	unknown function
eggNOG-mapper	UHGV-0035581_6	1443125.Z962_p0035	60.5	0.000000000223	endonuclease activity	N/A
COG	UHGV-0035581_6	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0035581_7	phrog_72	64.0	2.5e-18	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0035581_7	UniRef90_UPI000C7BF263	127.0	6.28e-34	recombination protein NinB	N/A
eggNOG-mapper	UHGV-0035581_7	445972.ANACOL_01825	120.0	4.76e-32	N/A	N/A
structural_annotation	UHGV-0035581_7	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0035581_8	phrog_7838	125.5	4.8e-37	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0035581_8	UniRef90_A0A8D9UGW3	175.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-0035581_8	742767.HMPREF9456_02052	191.0	0	N/A	N/A
structural_annotation	UHGV-0035581_8	PF04098,TIGR00607,COG5055	N/A	N/A	N/A	N/A
PHROG	UHGV-0035581_9	phrog_674	95.3	5.8e-28	N/A	unknown function
UniRef90	UHGV-0035581_9	UniRef90_A0A7X9AE52	157.0	2.21405e-43	N/A	N/A
eggNOG-mapper	UHGV-0035581_9	1127692.HMPREF9075_00081	92.4	3.49e-19	N/A	N/A
Pfam	UHGV-0035581_9	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0035581_9	PF07083	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0035581_15	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
KOfam	UHGV-0035581_20	K18830	72.5	8e-21	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0035581_20	phrog_8	56.4	1.7e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0035581_20	UniRef90_UPI00156FD326	150.0	1.82169e-44	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0035581_20	445972.ANACOL_03315	124.0	6.44e-35	N/A	N/A
Pfam	UHGV-0035581_20	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0035581_20	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0035581_20	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0035581_22	UniRef90_A0A2V2C802	219.0	0	YHYH domain-containing protein	N/A
eggNOG-mapper	UHGV-0035581_22	1163671.JAGI01000002_gene1685	88.6	2.96e-18	Flagellar rod assembly protein muramidase FlgJ	N/A
Pfam	UHGV-0035581_22	PF07833	N/A	N/A	Copper amine oxidase N-terminal domain	Cu_amine_oxidN1
NCBIFam	UHGV-0035581_22	NF033223.2	N/A	N/A	YHYH domain-containing protein	N/A
COG	UHGV-0035581_22	COG1705	N/A	N/A	Flagellum-specific peptidoglycan hydrolase FlgJ	N/A
KOfam	UHGV-0035581_23	K14059	158.1	0	int; integrase	N/A
PHROG	UHGV-0035581_23	phrog_1	168.5	0	integrase	integration and excision
UniRef90	UHGV-0035581_23	UniRef90_UPI001C109D33	466.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0035581_23	1462527.CCDM010000010_gene473	303.0	0	Phage integrase family	N/A
Pfam	UHGV-0035581_23	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0035581_23	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0035581_23	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0035581_24	445972.ANACOL_01884	56.2	0.0000000182	N/A	N/A
Pfam	UHGV-0035581_27	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
structural_annotation	UHGV-0035581_27	PF04545,MF_00245,NF001067,COG2771	N/A	N/A	N/A	N/A
PHROG	UHGV-0035581_28	phrog_9854	126.9	1.2e-37	N/A	unknown function
eggNOG-mapper	UHGV-0035581_28	1121091.AUMP01000003_gene2597	271.0	0	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis	N/A
Pfam	UHGV-0035581_28	PF18857	N/A	N/A	Large polyvalent protein associated domain 38	LPD38
COG	UHGV-0035581_28	COG0503	N/A	N/A	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	N/A
structural_annotation	UHGV-0035581_29	PF09486,NF038305	N/A	N/A	N/A	N/A
KOfam	UHGV-0035581_30	K17733	113.8	1.5e-33	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	N/A
PHROG	UHGV-0035581_30	phrog_6523	136.6	2e-40	endolysin	lysis
UniRef90	UHGV-0035581_30	UniRef90_F2JNY6	172.0	0	Peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin	N/A
eggNOG-mapper	UHGV-0035581_30	642492.Clole_1880	172.0	0	D-alanyl-D-alanine carboxypeptidase	N/A
Pfam	UHGV-0035581_30	PF13539	N/A	N/A	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
COG	UHGV-0035581_30	COG1876	N/A	N/A	LD-carboxypeptidase LdcB, LAS superfamily	N/A
structural_annotation	UHGV-0035581_30	PF02557,MF_01924,NF000380,COG1876	N/A	N/A	N/A	N/A
PHROG	UHGV-0035581_31	phrog_1129	66.8	2.4e-19	holin	lysis
UniRef90	UHGV-0035581_31	UniRef90_UPI001C1096AE	143.0	7.32879e-43	phage holin family protein	N/A
eggNOG-mapper	UHGV-0035581_31	702450.CUW_0551	105.0	7.11e-29	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0035581_31	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0035581_31	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0035581_32	phrog_1863	74.9	5.9e-22	N/A	unknown function
eggNOG-mapper	UHGV-0035581_32	748224.HMPREF9436_00408	108.0	3.74e-30	N/A	N/A
eggNOG-mapper	UHGV-0035581_33	476272.RUMHYD_00002	98.2	2.69e-20	N/A	N/A
eggNOG-mapper	UHGV-0035581_34	537013.CLOSTMETH_03776	83.2	0.0000000000000353	N/A	N/A
eggNOG-mapper	UHGV-0035581_36	1121423.JONT01000035_gene912	49.3	0.000000148	N/A	N/A
NCBIFam	UHGV-0035581_36	NF040910.1	N/A	N/A	CD1375 family protein	N/A
NCBIFam	UHGV-0035581_37	NF040910.1	N/A	N/A	CD1375 family protein	N/A
PHROG	UHGV-0035581_40	phrog_32680	44.4	2e-24	tail fiber protein	tail
eggNOG-mapper	UHGV-0035581_41	665956.HMPREF1032_03917	510.0	0	N/A	N/A
structural_annotation	UHGV-0035581_41	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
PHROG	UHGV-0035581_42	phrog_13046	51.7	0.000000000000013	N/A	unknown function
eggNOG-mapper	UHGV-0035581_42	693746.OBV_23880	127.0	4.84e-34	N/A	N/A
structural_annotation	UHGV-0035581_42	PF20387	N/A	N/A	N/A	N/A
PHROG	UHGV-0035581_43	phrog_371	134.8	5.19999e-40	major head protein	head and packaging
UniRef90	UHGV-0035581_43	UniRef90_UPI001C11985C	491.0	0	Mu-like prophage major head subunit gpT family protein	N/A
eggNOG-mapper	UHGV-0035581_43	1519439.JPJG01000060_gene1890	281.0	0	N/A	N/A
Pfam	UHGV-0035581_43	PF10124	N/A	N/A	Mu-like prophage major head subunit gpT	Mu-like_gpT
structural_annotation	UHGV-0035581_43	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0035581_44	phrog_24113	52.9	0.0000000000000048	N/A	unknown function
structural_annotation	UHGV-0035581_44	PF11133,COG5471	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0035581_45	693746.OBV_23910	60.5	0.000000139	N/A	N/A
PHROG	UHGV-0035581_47	phrog_156	237.0	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0035581_47	1519439.JPJG01000060_gene1886	493.0	0	N/A	N/A
structural_annotation	UHGV-0035581_47	PF16510,MF_04120,TIGR01542,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0035581_48	K21523	54.4	1.8e-27	gp17; terminase, large subunit [EC:3.1.-.-]	N/A
PHROG	UHGV-0035581_48	phrog_2	95.8	6.1e-28	terminase large subunit	head and packaging
UniRef90	UHGV-0035581_48	UniRef90_R5AHR8	602.0	0	Putative terminase large subunit	N/A
eggNOG-mapper	UHGV-0035581_48	693746.OBV_23980	513.0	0	phage Terminase large subunit	N/A
COG	UHGV-0035581_48	COG4373	N/A	N/A	Mu-like prophage FluMu protein gp28	N/A
structural_annotation	UHGV-0035581_48	PF03237,PF17289,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
KOfam	UHGV-0035581_49	K07474	100.9	2.5e-29	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0035581_49	phrog_51	107.7	1.1e-31	terminase small subunit	head and packaging
UniRef90	UHGV-0035581_49	UniRef90_UPI00045EAA25	105.0	9.63e-26	terminase small subunit	N/A
eggNOG-mapper	UHGV-0035581_49	1298920.KI911353_gene4857	105.0	1.94e-26	Terminase small subunit	N/A
Pfam	UHGV-0035581_49	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0035581_49	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0035581_49	PF03592,COG3728	N/A	N/A	N/A	N/A
UniRef90	UHGV-0035581_50	UniRef90_G9YS61	50.1	0.0000015	Toxin-antitoxin system, antitoxin component, ribbon-helix-helix domain protein	N/A
Pfam	UHGV-0035581_50	PF05534	N/A	N/A	HicB family	HicB
structural_annotation	UHGV-0035581_50	PF03869,NF010256	N/A	N/A	N/A	N/A
PHROG	UHGV-0035581_52	phrog_15863	169.6	0	N/A	unknown function
UniRef90	UHGV-0035581_52	UniRef90_A0A417HVZ9	162.0	0	J domain-containing protein	N/A
eggNOG-mapper	UHGV-0035581_52	693746.OBV_01780	154.0	1.4013e-45	DnaJ molecular chaperone homology domain	N/A
COG	UHGV-0035581_52	COG2214	N/A	N/A	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	N/A
structural_annotation	UHGV-0035581_53	PF17917	N/A	N/A	N/A	N/A
KOfam	UHGV-0035581_55	K19117	76.9	2.5e-22	csd1, cas8c; CRISPR-associated protein Csd1	N/A
UniRef90	UHGV-0035581_55	UniRef90_UPI001570630B	235.0	0	type I-C CRISPR-associated protein Cas8c/Csd1	N/A
eggNOG-mapper	UHGV-0035581_55	1460634.JCM19037_4279	81.3	0.0000000000000132	CRISPR-associated protein (Cas_Csd1)	N/A
PADLOC	UHGV-0035581_55	cd09757	88.1	1.6e-25	CAS-I-C; effector_LS	CRISPR-CAS
Pfam	UHGV-0035581_55	PF09709	N/A	N/A	CRISPR-associated protein (Cas_Csd1)	Cas_Csd1
COG	UHGV-0035581_55	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-0035581_55	PF09709,TIGR01863	N/A	N/A	N/A	N/A
PHROG	UHGV-0035581_56	phrog_36	60.0	5.1e-17	transcriptional regulator	transcription regulation
Pfam	UHGV-0035581_56	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
COG	UHGV-0035581_56	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0035581_56	PF07374,MF_00674,NF008895,COG1342	N/A	N/A	N/A	N/A
UniRef90	UHGV-0035581_57	UniRef90_K1SN71	49.7	0.00000193	HTH_30 domain-containing protein	N/A
COG	UHGV-0035581_57	COG3835	N/A	N/A	Sugar diacid utilization regulator CdaR	N/A
structural_annotation	UHGV-0035581_57	PF13556,TIGR00637,COG2771	N/A	N/A	N/A	N/A
PHROG	UHGV-0035581_59	phrog_2245	68.7	8.9e-20	nucleoside triphosphate pyrophosphohydrolase	other
eggNOG-mapper	UHGV-0035581_59	658655.HMPREF0988_00885	53.9	0.0000000646	N/A	N/A
PHROG	UHGV-0035581_60	phrog_6721	168.2	0	N/A	unknown function
UniRef90	UHGV-0035581_60	UniRef90_A0A373Q5P7	543.0	0	HNHc domain-containing protein	N/A
eggNOG-mapper	UHGV-0035581_60	428125.CLOLEP_01387	189.0	0	N/A	N/A
PADLOC	UHGV-0035581_60	HEase_00016	70.5	3.5e-20	homing endonuclease	RM
Pfam	UHGV-0035581_60	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-0035581_60	PF02796,PF07463,TIGR02170	N/A	N/A	N/A	N/A
PHROG	UHGV-0035581_62	phrog_21026	49.7	0.00000000000005	N/A	unknown function

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0035581	Yes	42,936	39	100	1