vOTU vOTU-044535

vOTU: vOTU-044535

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-044535
Number of genomes	4
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-02342 → vGENUS-02794 → vSUBGEN-43270 → vOTU-044535
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Butyricicoccaceae → Butyricicoccus_A → Butyricicoccus_A sp002395695
Host range breadth	Species
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0036466
Biosample ID	SAMEA4969120
Genome length (bp)	39,994 bps
CheckV completeness	100.00% (Complete)
CDS count	48
CDS density	94.86%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Butyricicoccaceae → Butyricicoccus_A → Butyricicoccus_A sp002395695	Total connections	67	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Butyricicoccaceae → Butyricicoccus_A → Butyricicoccus_A sp002395695	Total connections	18	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0036466_1	K14059	67.1	4.2e-19	int; integrase	N/A
PHROG	UHGV-0036466_1	phrog_1	51.5	0.00000000000002	integrase	integration and excision
eggNOG-mapper	UHGV-0036466_1	1200557.JHWV01000023_gene2483	67.4	0.0000000000475	Phage integrase family	N/A
Pfam	UHGV-0036466_1	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
COG	UHGV-0036466_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
eggNOG-mapper	UHGV-0036466_2	565664.EFXG_02622	60.8	0.00000000664	Membrane	N/A
COG	UHGV-0036466_2	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
UniRef90	UHGV-0036466_3	UniRef90_R7G6H5	92.4	2.88e-20	Peptidase_S24 domain-containing protein	N/A
eggNOG-mapper	UHGV-0036466_3	999413.HMPREF1094_00245	90.1	3.83e-20	Peptidase S24-like	N/A
Pfam	UHGV-0036466_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0036466_3	COG2932	N/A	N/A	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	N/A
structural_annotation	UHGV-0036466_3	PF05339,NF007257,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0036466_4	UniRef90_UPI00145A49C6	85.9	1.19e-20	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0036466_4	1430331.EP10_02425	53.1	0.0000000173	N/A	N/A
structural_annotation	UHGV-0036466_4	PF05339,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0036466_11	phrog_434	295.7	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0036466_11	UniRef90_UPI001C0FF417	646.0	0	YqaJ viral recombinase family protein	N/A
eggNOG-mapper	UHGV-0036466_11	1226322.HMPREF1545_00014	275.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-0036466_11	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0036466_11	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0036466_11	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0036466_11	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
KOfam	UHGV-0036466_12	K07455	288.3	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0036466_12	phrog_148	268.3	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0036466_12	UniRef90_UPI001C121E6F	516.0	0	recombinase RecT	N/A
eggNOG-mapper	UHGV-0036466_12	1226322.HMPREF1545_00015	312.0	0	RecT family	N/A
Pfam	UHGV-0036466_12	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0036466_12	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0036466_12	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0036466_12	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0036466_13	phrog_190	123.3	1.7e-36	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0036466_13	UniRef90_UPI001C0F5697	219.0	0	N/A	N/A
eggNOG-mapper	UHGV-0036466_13	563031.HMPREF0666_01122	105.0	1.88e-27	N/A	N/A
Pfam	UHGV-0036466_13	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0036466_13	PF06356	N/A	N/A	N/A	N/A
KOfam	UHGV-0036466_14	K03111	140.1	2.4e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0036466_14	phrog_44	154.2	0	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0036466_14	UniRef90_UPI001C11E4BC	301.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0036466_14	1408437.JNJN01000012_gene314	182.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0036466_14	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0036466_14	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0036466_14	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0036466_14	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0036466_14	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0036466_15	phrog_5968	140.2	1.19993e-41	replisome organizer	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0036466_15	UniRef90_UPI001C105783	483.0	0	phage replisome organizer N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0036466_15	1235802.C823_05698	182.0	0	DnaD domain protein	N/A
Pfam	UHGV-0036466_15	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
NCBIFam	UHGV-0036466_15	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
COG	UHGV-0036466_15	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0036466_15	PF09681,TIGR01714,COG3388	N/A	N/A	N/A	N/A
KOfam	UHGV-0036466_16	K02315	130.2	2e-38	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0036466_16	phrog_50	122.4	4.4e-36	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0036466_16	UniRef90_A0A396NX04	230.0	0	IstB_IS21 domain-containing protein	N/A
eggNOG-mapper	UHGV-0036466_16	445972.ANACOL_01829	214.0	0	N/A	N/A
Pfam	UHGV-0036466_16	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-0036466_16	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0036466_16	PF01695,MF_01158,NF005378,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-0036466_19	phrog_997	97.7	1.1e-28	replication terminator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0036466_19	UniRef90_UPI001CBF2F6A	84.7	1.2e-18	replication terminator protein	N/A
eggNOG-mapper	UHGV-0036466_19	120574.Q94M63_9CAUD	72.0	0.0000000000000267	N/A	N/A
PHROG	UHGV-0036466_20	phrog_1029	163.3	0	N/A	unknown function
UniRef90	UHGV-0036466_20	UniRef90_B9J6M7	113.0	1.21e-25	Phage-related protein	N/A
eggNOG-mapper	UHGV-0036466_20	1499683.CCFF01000017_gene2597	125.0	8.02e-31	N/A	N/A
PHROG	UHGV-0036466_24	phrog_2245	40.2	0.000000000053	nucleoside triphosphate pyrophosphohydrolase	other
structural_annotation	UHGV-0036466_24	PF11998,COG5420	N/A	N/A	N/A	N/A
PHROG	UHGV-0036466_29	phrog_2412	80.8	1.8e-23	N/A	unknown function
eggNOG-mapper	UHGV-0036466_29	742738.HMPREF9460_02504	102.0	2.86e-26	N/A	N/A
KOfam	UHGV-0036466_30	K06909	90.9	1.7e-26	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0036466_30	phrog_979	215.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-0036466_30	UniRef90_UPI001D0245C4	558.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0036466_30	1321782.HMPREF1986_00343	549.0	0	N/A	N/A
Pfam	UHGV-0036466_30	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0036466_30	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0036466_30	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0036466_31	phrog_156	332.7	0	portal protein	head and packaging
UniRef90	UHGV-0036466_31	UniRef90_A0A8D9UH10	508.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-0036466_31	748224.HMPREF9436_01396	461.0	0	N/A	N/A
structural_annotation	UHGV-0036466_31	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
KOfam	UHGV-0036466_32	K07584	40.7	0.000000000033	N/A	N/A
PHROG	UHGV-0036466_32	phrog_4478	49.7	0.000000000000049	peptidase	other
UniRef90	UHGV-0036466_32	UniRef90_UPI0005504E05	53.5	0.000000521	ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0036466_32	748224.HMPREF9436_01398	52.4	0.00000197	Cysteine protease Prp	N/A
Pfam	UHGV-0036466_32	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0036466_32	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0036466_32	PF04327,NF011125,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0036466_33	phrog_13908	203.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0036466_33	1410650.JHWL01000003_gene2831	95.1	7.25e-20	N/A	N/A
PHROG	UHGV-0036466_34	phrog_1357	257.0	0	major head protein	head and packaging
UniRef90	UHGV-0036466_34	UniRef90_UPI001BB478E0	301.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0036466_34	748224.HMPREF9436_01399	242.0	0	N/A	N/A
Pfam	UHGV-0036466_34	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0036466_34	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0036466_34	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0036466_36	phrog_892	49.6	2.9e-21	tail fiber protein	tail
PHROG	UHGV-0036466_37	phrog_12105	73.1	3.5e-21	N/A	unknown function
eggNOG-mapper	UHGV-0036466_37	1519439.JPJG01000060_gene1891	54.3	0.000000108	N/A	N/A
PHROG	UHGV-0036466_38	phrog_511	143.9	9.5008e-43	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0036466_38	657322.FPR_02360	177.0	1.4013e-45	N/A	N/A
structural_annotation	UHGV-0036466_38	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0036466_40	1203606.HMPREF1526_02741	60.5	0.0000000756	N/A	N/A
PHROG	UHGV-0036466_41	phrog_22978	62.3	1.2e-29	N/A	unknown function
eggNOG-mapper	UHGV-0036466_41	1408437.JNJN01000060_gene452	491.0	0	heme binding	N/A
Pfam	UHGV-0036466_41	PF18798	N/A	N/A	Large polyvalent protein-associated domain 3	LPD3
Pfam	UHGV-0036466_41	PF18760	N/A	N/A	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
COG	UHGV-0036466_41	COG0503	N/A	N/A	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	N/A
PHROG	UHGV-0036466_43	phrog_38337	45.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0036466_43	1499967.BAYZ01000016_gene6532	85.5	0.00000000000003	cellulose 1,4-beta-cellobiosidase activity	N/A
COG	UHGV-0036466_43	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
PHROG	UHGV-0036466_45	phrog_199	45.6	0.00000000000068	holin	lysis
UniRef90	UHGV-0036466_45	UniRef90_UPI001C109117	209.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-0036466_45	877414.ATWA01000062_gene1614	100.0	5.79e-26	Bacteriophage holin family	N/A
Pfam	UHGV-0036466_45	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
structural_annotation	UHGV-0036466_45	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
COG	UHGV-0036466_46	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0036466_46	PF03412,COG4990	N/A	N/A	N/A	N/A
UniRef90	UHGV-0036466_47	UniRef90_R6DRH1	114.0	4.02e-28	Putative TnpX site-specific recombinase	N/A
eggNOG-mapper	UHGV-0036466_47	742740.HMPREF9474_00056	141.0	1.79e-39	N/A	N/A
Pfam	UHGV-0036466_47	PF18912	N/A	N/A	Double zinc ribbon domain	DZR_2
structural_annotation	UHGV-0036466_47	PF12167,PF13392	N/A	N/A	N/A	N/A
KOfam	UHGV-0036466_48	K14059	121.3	1.5e-35	int; integrase	N/A
PHROG	UHGV-0036466_48	phrog_1	121.8	7.8e-36	integrase	integration and excision
UniRef90	UHGV-0036466_48	UniRef90_UPI0019585560	168.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0036466_48	1321814.HMPREF9089_00905	146.0	1.95e-39	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0036466_48	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0036466_48	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0036466_48	PF00589,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0036466	Yes	39,994	53	100	1
UHGV-0036896	No	40,723	53	98	1
UHGV-0036616	No	39,448	53	95	1
UHGV-0040894	No	37,657	53	90	1