vOTU vOTU-044546

vOTU: vOTU-044546

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-044546
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-01629 → vGENUS-01702 → vSUBGEN-16524 → vOTU-044546
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83
Host range breadth	Genus
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0036567
Biosample ID	SAMEA4969127
Genome length (bp)	42,756 bps
CheckV completeness	100.00% (Complete)
CDS count	57
CDS density	94.70%
tRNA count	1
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83	Total connections	136	Host agreement	73.53
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83	Total connections	14	Host agreement	71.43

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0036567_1	phrog_27197	69.1	6.7e-20	N/A	unknown function
eggNOG-mapper	UHGV-0036567_1	394503.Ccel_3068	59.7	0.00000000423	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0036567_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0036567_1	NF007410	N/A	N/A	N/A	N/A
UniRef90	UHGV-0036567_4	UniRef90_A0A845QLQ8	187.0	0	N/A	N/A
eggNOG-mapper	UHGV-0036567_4	33035.JPJF01000135_gene5082	121.0	1.66e-31	N/A	N/A
structural_annotation	UHGV-0036567_4	PF06378,TIGR00607,COG5055	N/A	N/A	N/A	N/A
Pfam	UHGV-0036567_5	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
structural_annotation	UHGV-0036567_5	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-0036567_6	phrog_72	54.6	0.0000000000000012	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0036567_6	UniRef90_A0A8D9PDS2	242.0	0	NinB protein	N/A
eggNOG-mapper	UHGV-0036567_6	445972.ANACOL_01825	139.0	2.07e-39	N/A	N/A
structural_annotation	UHGV-0036567_6	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0036567_7	phrog_7566	98.2	4.5e-29	N/A	unknown function
UniRef90	UHGV-0036567_7	UniRef90_A0A8D9UHC0	144.0	2.52234e-43	Recombination enhancement function protein nuclease	N/A
eggNOG-mapper	UHGV-0036567_7	693746.OBV_24070	125.0	3.3e-36	N/A	N/A
KOfam	UHGV-0036567_8	K00558	163.6	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0036567_8	phrog_116	191.7	0	DNA methyltransferase	other
UniRef90	UHGV-0036567_8	UniRef90_A0A6N2RVG9	389.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0036567_8	718252.FP2_16350	369.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0036567_8	oMTase_00004	203.9	0	orphan methyltransferase	RM
Pfam	UHGV-0036567_8	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0036567_8	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0036567_8	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
UniRef90	UHGV-0036567_9	UniRef90_UPI001F4CC127	56.2	0.00000000351	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0036567_9	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
structural_annotation	UHGV-0036567_9	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
KOfam	UHGV-0036567_10	K03111	139.4	3.80004e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0036567_10	phrog_44	140.5	9.90017e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0036567_10	UniRef90_A0A810QFR8	196.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0036567_10	1007096.BAGW01000023_gene151	190.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0036567_10	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0036567_10	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0036567_10	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0036567_10	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0036567_10	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0036567_11	phrog_15768	130.4	1.4e-38	N/A	unknown function
UniRef90	UHGV-0036567_11	UniRef90_A0A4D7AS84	127.0	7.14e-33	N/A	N/A
eggNOG-mapper	UHGV-0036567_11	642492.Clole_0946	80.9	0.000000000000001	DnaD domain protein	N/A
AcrCatalog	UHGV-0036567_11	cluster_38323	94.7	1.47e-25	NA	N/A
Pfam	UHGV-0036567_11	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-0036567_11	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0036567_11	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-0036567_17	K00390	90.0	1.4e-26	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0036567_17	phrog_424	154.5	0	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0036567_17	UniRef90_A0A0U3EGR7	347.0	0	Phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0036567_17	742823.HMPREF9465_01257	324.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
Pfam	UHGV-0036567_17	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0036567_17	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0036567_17	PF01507,MF_00063,NF006327,COG0175	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0036567_18	445972.ANACOL_00168	50.1	0.000000277	N/A	N/A
PHROG	UHGV-0036567_19	phrog_599	47.7	0.00000000000033	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0036567_19	UniRef90_A0A417HWB0	55.5	0.00000000699	Restriction alleviation protein, Lar family	N/A
Pfam	UHGV-0036567_19	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0036567_19	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-0036567_19	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
COG	UHGV-0036567_19	COG1601	N/A	N/A	Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain	N/A
structural_annotation	UHGV-0036567_19	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-0036567_24	phrog_606	82.3	5e-24	terminase small subunit	head and packaging
UniRef90	UHGV-0036567_24	UniRef90_UPI00195648BB	172.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0036567_24	445972.ANACOL_01838	137.0	2.71e-39	DNA-packaging protein gp3	N/A
Pfam	UHGV-0036567_24	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0036567_24	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-0036567_25	K06909	136.9	1.90001e-40	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0036567_25	phrog_979	126.0	1.3e-38	terminase large subunit	head and packaging
UniRef90	UHGV-0036567_25	UniRef90_A0A810Q5R0	621.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0036567_25	1410650.JHWL01000003_gene2834	567.0	0	N/A	N/A
Pfam	UHGV-0036567_25	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0036567_25	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0036567_25	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0036567_26	phrog_156	300.1	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0036567_26	1410650.JHWL01000003_gene2833	537.0	0	N/A	N/A
structural_annotation	UHGV-0036567_26	PF16510,MF_04120,TIGR01538,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0036567_27	K07584	47.2	0.00000000000041	N/A	N/A
PHROG	UHGV-0036567_27	phrog_4478	51.0	0.000000000000021	peptidase	other
UniRef90	UHGV-0036567_27	UniRef90_UPI00102FFAFD	59.3	0.0000000025	ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0036567_27	1120973.AQXL01000127_gene2693	50.4	0.00000157	Cysteine protease Prp	N/A
Pfam	UHGV-0036567_27	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0036567_27	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0036567_27	PF04327,NF011133,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0036567_28	phrog_13908	185.3	0	N/A	unknown function
eggNOG-mapper	UHGV-0036567_28	1410650.JHWL01000003_gene2831	102.0	3.05e-22	N/A	N/A
PHROG	UHGV-0036567_29	phrog_1357	207.0	0	major head protein	head and packaging
UniRef90	UHGV-0036567_29	UniRef90_A0A2V2CFL5	605.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0036567_29	1410650.JHWL01000003_gene2830	269.0	0	N/A	N/A
NCBIFam	UHGV-0036567_29	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0036567_29	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0036567_31	phrog_12105	130.2	8.3e-39	N/A	unknown function
eggNOG-mapper	UHGV-0036567_31	1226322.HMPREF1545_03850	91.7	3.74e-22	N/A	N/A
PHROG	UHGV-0036567_32	phrog_511	187.9	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0036567_32	1410650.JHWL01000003_gene2827	317.0	0	N/A	N/A
structural_annotation	UHGV-0036567_32	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0036567_33	NF038340	N/A	N/A	N/A	N/A
PHROG	UHGV-0036567_34	phrog_372	232.5	0	tail protein	tail
UniRef90	UHGV-0036567_34	UniRef90_UPI001373A0FD	247.0	0	N/A	N/A
eggNOG-mapper	UHGV-0036567_34	1235802.C823_05263	236.0	0	N/A	N/A
Pfam	UHGV-0036567_34	PF05895	N/A	N/A	N/A	DUF859
COG	UHGV-0036567_34	COG4675	N/A	N/A	Phage tail collar domain	N/A
PHROG	UHGV-0036567_35	phrog_2649	57.7	3e-16	endolysin	lysis
UniRef90	UHGV-0036567_35	UniRef90_A0A358ARU4	170.0	9.80909e-45	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0036567_35	1410650.JHWL01000003_gene2815	133.0	1.62e-31	N/A	N/A
Pfam	UHGV-0036567_35	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
structural_annotation	UHGV-0036567_35	PF01471,TIGR02869	N/A	N/A	N/A	N/A
PHROG	UHGV-0036567_36	phrog_22978	178.7	0	N/A	unknown function
UniRef90	UHGV-0036567_36	UniRef90_A0A844DQQ1	296.0	0	MuF_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0036567_36	693746.OBV_23800	148.0	2.66e-32	N/A	N/A
Pfam	UHGV-0036567_36	PF18819	N/A	N/A	Phage MuF-C-terminal domain	MuF_C
UniRef90	UHGV-0036567_37	UniRef90_A0A3D5TE86	134.0	2.56e-39	Branched-chain amino acid ABC transporter permease	N/A
eggNOG-mapper	UHGV-0036567_37	1235835.C814_01206	101.0	5.11e-27	N/A	N/A
PHROG	UHGV-0036567_38	phrog_15594	71.9	7.1e-21	N/A	unknown function
eggNOG-mapper	UHGV-0036567_38	1118055.CAGU01000013_gene763	52.8	0.000000131	N/A	N/A
structural_annotation	UHGV-0036567_38	PF16640,TIGR04488	N/A	N/A	N/A	N/A
PHROG	UHGV-0036567_39	phrog_31538	59.3	7.4e-17	N/A	unknown function
eggNOG-mapper	UHGV-0036567_39	411460.RUMTOR_01351	54.7	0.0000000463	N/A	N/A
PHROG	UHGV-0036567_40	phrog_13589	186.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0036567_40	428125.CLOLEP_01434	231.0	0	N/A	N/A
KOfam	UHGV-0036567_41	K17256	40.9	0.0000000000022	IGFALS, ALS; insulin-like growth factor-binding protein complex acid labile subunit	N/A
PHROG	UHGV-0036567_41	phrog_35892	100.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0036567_41	411460.RUMTOR_01324	55.5	0.0000056	N/A	N/A
Pfam	UHGV-0036567_41	PF13306	N/A	N/A	BspA type Leucine rich repeat region (6 copies)	LRR_5
Pfam	UHGV-0036567_41	PF13855	N/A	N/A	Leucine rich repeat	LRR_8
PHROG	UHGV-0036567_42	phrog_1129	58.6	8e-17	holin	lysis
UniRef90	UHGV-0036567_42	UniRef90_R5D220	131.0	3.76e-38	Putative holin	N/A
eggNOG-mapper	UHGV-0036567_42	1007096.BAGW01000032_gene1582	111.0	5.29e-31	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0036567_42	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0036567_42	PF06946	N/A	N/A	N/A	N/A
KOfam	UHGV-0036567_43	K01447	95.4	9e-28	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0036567_43	phrog_670	118.3	7.5e-35	endolysin	lysis
UniRef90	UHGV-0036567_43	UniRef90_R6M8I3	204.0	0	SH3 domain protein	N/A
eggNOG-mapper	UHGV-0036567_43	411463.EUBVEN_00418	199.0	0	Ami_2	N/A
Pfam	UHGV-0036567_43	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0036567_43	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0036567_43	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-0036567_43	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
UniRef90	UHGV-0036567_44	UniRef90_A0A658JVX5	69.7	0.0000000000000355	Sigma-70 family RNA polymerase sigma factor	N/A
Pfam	UHGV-0036567_44	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
structural_annotation	UHGV-0036567_44	PF04545,MF_00674,NF008895,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-0036567_46	phrog_22984	46.6	0.0000000000006	N/A	unknown function
PHROG	UHGV-0036567_47	phrog_16490	56.2	7.3e-16	N/A	unknown function
eggNOG-mapper	UHGV-0036567_47	397290.C810_05212	60.8	0.0000000199	N/A	N/A
structural_annotation	UHGV-0036567_48	PF18573,NF033147	N/A	N/A	N/A	N/A
UniRef90	UHGV-0036567_49	UniRef90_A0A8F0WD75	77.4	0.0000000000000119	RNA polymerase sigma factor/Ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0036567_49	1408437.JNJN01000043_gene801	73.2	0.0000000000000875	N/A	N/A
KOfam	UHGV-0036567_50	K14059	170.1	0	int; integrase	N/A
PHROG	UHGV-0036567_50	phrog_1	173.9	0	integrase	integration and excision
UniRef90	UHGV-0036567_50	UniRef90_A0A1C5W824	546.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0036567_50	693746.OBV_41260	296.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0036567_50	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
Pfam	UHGV-0036567_50	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0036567_50	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0036567_50	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0036567_52	1121344.JHZO01000003_gene989	57.4	0.00000000677	PFAM helix-turn-helix domain protein	N/A
Pfam	UHGV-0036567_52	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0036567_52	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0036567_52	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0036567_53	phrog_8	42.1	0.000000000019	transcriptional regulator	transcription regulation
UniRef90	UHGV-0036567_53	UniRef90_A0A096BAN9	68.6	0.0000000000000738	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0036567_53	411459.RUMOBE_00961	55.8	0.0000000058	Bacteriophage CI repressor helix-turn-helix domain	N/A
Pfam	UHGV-0036567_53	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0036567_53	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-0036567_53	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0036567_55	PF11112,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0036567_57	phrog_4433	157.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0036567_57	573061.Clocel_3578	129.0	4.86e-33	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0036567_57	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0036567_57	NF000318	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0036567	Yes	42,756	59	100	1