vOTU vOTU-044623

vOTU: vOTU-044623

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-044623
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00026 → vSUBFAM-02096 → vGENUS-02422 → vSUBGEN-13536 → vOTU-044623
Host lineage	Bacteria → Firmicutes_A → Clostridia → Christensenellales → UBA1750 → Spyradocola → Spyradocola sp905193155
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0037719
Biosample ID	SAMEA4969128
Genome length (bp)	35,949 bps
CheckV completeness	100.00% (Complete)
CDS count	63
CDS density	92.98%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Christensenellales → UBA1750 → Spyradocola → Spyradocola sp905193155	Total connections	18	Host agreement	94.44
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0037719_2	K01160	43.8	0.0000000000068	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0037719_2	phrog_1682	80.1	3.3e-23	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0037719_2	UniRef90_U2Q8K8	137.0	1.84e-39	Crossover junction endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-0037719_2	1226322.HMPREF1545_04070	137.0	3.08e-40	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-0037719_2	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0037719_2	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0037719_3	phrog_9474	105.0	7.7e-31	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0037719_3	UniRef90_A0A1F8UZU6	85.5	9.5e-16	DnaB_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0037719_3	411483.FAEPRAA2165_01877	72.0	0.00000000000942	HNH endonuclease	N/A
Pfam	UHGV-0037719_3	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
COG	UHGV-0037719_3	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0037719_3	PF09681,PF07261,TIGR01714,TIGR01446,COG3935	N/A	N/A	N/A	N/A
KOfam	UHGV-0037719_4	K07455	178.0	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0037719_4	phrog_148	173.5	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0037719_4	UniRef90_A0A354AUE2	367.0	0	Recombinase RecT	N/A
eggNOG-mapper	UHGV-0037719_4	272626.lin0085	209.0	0	Recombinational DNA repair protein (RecE pathway)	N/A
Pfam	UHGV-0037719_4	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0037719_4	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0037719_4	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0037719_4	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0037719_5	phrog_434	260.7	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0037719_5	UniRef90_A0A7I8D1X6	311.0	0	YqaJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0037719_5	428125.CLOLEP_01823	301.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-0037719_5	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0037719_5	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0037719_5	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0037719_5	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
Pfam	UHGV-0037719_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0037719_6	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0037719_11	PF07378,MF_00783,COG5443	N/A	N/A	N/A	N/A
Pfam	UHGV-0037719_13	PF08797	N/A	N/A	HIRAN domain	HIRAN
KOfam	UHGV-0037719_15	K18830	49.5	0.00000000000004	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
UniRef90	UHGV-0037719_15	UniRef90_A0A2U1BEG8	121.0	4.36e-33	Helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0037719_15	445972.ANACOL_03315	118.0	9.75e-33	N/A	N/A
Pfam	UHGV-0037719_15	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0037719_15	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0037719_15	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0037719_17	K14059	212.2	0	int; integrase	N/A
PHROG	UHGV-0037719_17	phrog_1	177.3	0	integrase	integration and excision
UniRef90	UHGV-0037719_17	UniRef90_A0A1J0LVS6	121.0	1.92e-27	DNA integration/recombination/inversion protein	N/A
eggNOG-mapper	UHGV-0037719_17	498848.TaqDRAFT_4755	121.0	3.22e-28	Phage integrase family	N/A
Pfam	UHGV-0037719_17	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0037719_17	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0037719_17	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0037719_17	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0037719_19	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0037719_20	phrog_16490	51.5	0.000000000000022	N/A	unknown function
eggNOG-mapper	UHGV-0037719_20	397290.C810_05212	67.0	0.000000000185	N/A	N/A
PHROG	UHGV-0037719_23	phrog_25567	91.7	4.6e-27	N/A	unknown function
UniRef90	UHGV-0037719_23	UniRef90_A0A0K9N6V9	69.3	0.00000000000127	Toxin-antitoxin system, antitoxin component, Xre family	N/A
eggNOG-mapper	UHGV-0037719_23	411469.EUBHAL_00738	66.6	0.00000000000163	N/A	N/A
AcrCatalog	UHGV-0037719_25	cluster_29173	58.2	0.0000000000000251	NA	N/A
UniRef90	UHGV-0037719_26	UniRef90_A0A843IZ65	55.8	0.0000000111	Sigma70_r4 domain-containing protein	N/A
PHROG	UHGV-0037719_27	phrog_6918	67.1	2.3e-19	holin	lysis
UniRef90	UHGV-0037719_27	UniRef90_U2S4Z6	55.5	0.0000000997	Phage holin, LL-H family	N/A
eggNOG-mapper	UHGV-0037719_27	1226322.HMPREF1545_03575	55.5	0.0000000167	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-0037719_27	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
structural_annotation	UHGV-0037719_27	PF09682,TIGR01673	N/A	N/A	N/A	N/A
PHROG	UHGV-0037719_32	phrog_1863	41.2	0.000000000018	N/A	unknown function
eggNOG-mapper	UHGV-0037719_32	1235797.C816_02840	79.3	7.83e-18	N/A	N/A
KOfam	UHGV-0037719_33	K06381	170.4	0	spoIID; stage II sporulation protein D	N/A
PHROG	UHGV-0037719_33	phrog_894	53.0	0.0000000000000046	endolysin	lysis
UniRef90	UHGV-0037719_33	UniRef90_A0A7C3GNE4	113.0	2.57e-24	SpoIID/LytB domain-containing protein	N/A
eggNOG-mapper	UHGV-0037719_33	1235835.C814_01292	120.0	8.39e-27	Ami_2	N/A
Pfam	UHGV-0037719_33	PF08486	N/A	N/A	Stage II sporulation protein	SpoIID
Pfam	UHGV-0037719_33	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
Pfam	UHGV-0037719_33	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
NCBIFam	UHGV-0037719_33	TIGR02669.1	N/A	N/A	SpoIID/LytB domain-containing protein	N/A
COG	UHGV-0037719_33	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0037719_33	PF08486,PF01471,TIGR02669,TIGR02869,COG2385,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-0037719_34	phrog_30034	82.1	7.3e-24	N/A	unknown function
UniRef90	UHGV-0037719_34	UniRef90_UPI001EDF4BF9	166.0	0	chitinase	N/A
eggNOG-mapper	UHGV-0037719_34	1226322.HMPREF1545_04028	163.0	0	N/A	N/A
Pfam	UHGV-0037719_34	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
eggNOG-mapper	UHGV-0037719_35	1121451.DESAM_p0005	71.6	0.000000000108	cellulose 1,4-beta-cellobiosidase activity	N/A
COG	UHGV-0037719_35	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
PHROG	UHGV-0037719_36	phrog_1220	150.3	0	head protein	head and packaging
UniRef90	UHGV-0037719_36	UniRef90_UPI001F2EB614	120.0	3.15e-27	phage tail protein	N/A
eggNOG-mapper	UHGV-0037719_36	1211817.CCAT010000079_gene1381	112.0	1.29e-26	COG NOG18825 non supervised orthologous group	N/A
structural_annotation	UHGV-0037719_36	PF20747	N/A	N/A	N/A	N/A
PHROG	UHGV-0037719_37	phrog_538	185.0	0	minor tail protein	tail
UniRef90	UHGV-0037719_37	UniRef90_UPI001C63A74C	145.0	5.47e-35	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-0037719_37	999411.HMPREF1092_00928	89.0	9.94e-17	Siphovirus ReqiPepy6 Gp37-like protein	N/A
Pfam	UHGV-0037719_37	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0037719_37	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0037719_38	phrog_36410	113.7	5.6e-34	N/A	unknown function
UniRef90	UHGV-0037719_38	UniRef90_A0A658JW57	202.0	0	Phage tail family protein	N/A
eggNOG-mapper	UHGV-0037719_38	755731.Clo1100_0556	169.0	0	Phage tail protein	N/A
Pfam	UHGV-0037719_38	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
COG	UHGV-0037719_38	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0037719_38	PF05709,PF20753,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-0037719_39	K03529	57.9	7.8e-19	smc; chromosome segregation protein	N/A
PHROG	UHGV-0037719_39	phrog_28	80.0	9.8e-24	tail length tape measure protein	tail
UniRef90	UHGV-0037719_39	UniRef90_A0A7X5IQS8	165.0	9.98e-38	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0037719_39	931626.Awo_c30950	158.0	1.81e-36	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0037719_39	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-0037719_39	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-0037719_39	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0037719_40	PF11836,TIGR01674	N/A	N/A	N/A	N/A
PHROG	UHGV-0037719_41	phrog_88	78.0	1.2e-22	major tail protein	tail
UniRef90	UHGV-0037719_41	UniRef90_A0A7X2TMG2	63.2	0.00000000516	Major tail protein	N/A
eggNOG-mapper	UHGV-0037719_41	1195236.CTER_5106	54.3	0.00000171	phage major tail protein, phi13 family	N/A
COG	UHGV-0037719_41	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0037719_41	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0037719_42	1203606.HMPREF1526_00974	53.1	0.000000744	N/A	N/A
eggNOG-mapper	UHGV-0037719_43	742738.HMPREF9460_04074	67.4	0.000000000000519	N/A	N/A
structural_annotation	UHGV-0037719_43	PF05657	N/A	N/A	N/A	N/A
Pfam	UHGV-0037719_44	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
structural_annotation	UHGV-0037719_44	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0037719_45	phrog_40	48.3	0.00000000000015	head-tail adaptor Ad1	connector
UniRef90	UHGV-0037719_45	UniRef90_A0A412ZBS2	67.4	0.00000000000125	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0037719_45	1196031.ALEG01000039_gene1818	63.5	0.00000000000648	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-0037719_45	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
NCBIFam	UHGV-0037719_45	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-0037719_45	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0037719_46	phrog_10	233.6	0	major head protein	head and packaging
UniRef90	UHGV-0037719_46	UniRef90_UPI0009511B79	544.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0037719_46	397288.C806_00073	313.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0037719_46	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0037719_46	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0037719_46	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0037719_46	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0037719_47	K06904	75.2	1.2e-21	N/A	N/A
PHROG	UHGV-0037719_47	phrog_80	99.0	8.1e-29	head maturation protease	head and packaging
UniRef90	UHGV-0037719_47	UniRef90_UPI00082C16F5	254.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0037719_47	1304866.K413DRAFT_1224	160.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0037719_47	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
COG	UHGV-0037719_47	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0037719_47	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0037719_50	phrog_12	209.0	0	portal protein	head and packaging
UniRef90	UHGV-0037719_50	UniRef90_UPI00189D81A2	510.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0037719_50	1304866.K413DRAFT_1223	385.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0037719_50	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0037719_50	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0037719_50	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0037719_50	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0037719_51	phrog_9	258.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0037719_51	UniRef90_UPI0018982ECF	865.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0037719_51	1414720.CBYM010000002_gene575	777.0	0	Terminase	N/A
Pfam	UHGV-0037719_51	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0037719_51	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0037719_51	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0037719_51	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
UniRef90	UHGV-0037719_52	UniRef90_UPI001898F58A	161.0	0	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0037719_52	1414720.CBYM010000002_gene576	129.0	1.53e-35	N/A	N/A
structural_annotation	UHGV-0037719_52	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
KOfam	UHGV-0037719_53	K07451	42.0	0.000000000016	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0037719_53	phrog_144	73.6	2.9e-21	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0037719_53	UniRef90_A0A373VSA3	100.0	7.92e-25	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0037719_53	279808.SH1777	64.7	0.0000000000104	HNH nucleases	N/A
Pfam	UHGV-0037719_53	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0037719_53	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0037719_54	phrog_36	48.4	0.00000000000018	transcriptional regulator	transcription regulation
structural_annotation	UHGV-0037719_54	PF05263,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0037719_55	phrog_799	171.7	0	DNA methyltransferase	other
UniRef90	UHGV-0037719_55	UniRef90_A0A1C0AG94	223.0	0	NAD(P)-dependent oxidoreductase	N/A
eggNOG-mapper	UHGV-0037719_55	1123263.AUKY01000096_gene1823	201.0	0	DNA restriction-modification system	N/A
COG	UHGV-0037719_55	COG0827	N/A	N/A	Adenine-specific DNA N6-methylase	N/A
structural_annotation	UHGV-0037719_55	PF03848,MF_00341,NF012219,COG1255	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0037719_56	398578.Daci_1924	73.2	0.00000000000000276	N/A	N/A
PHROG	UHGV-0037719_57	phrog_20532	49.0	0.00000000000012	N/A	unknown function
KOfam	UHGV-0037719_58	K02536	52.9	2.2e-16	lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]	N/A
PHROG	UHGV-0037719_58	phrog_5353	41.3	0.00000000002	N/A	unknown function
Pfam	UHGV-0037719_58	PF00132	N/A	N/A	Bacterial transferase hexapeptide (six repeats)	Hexapep
COG	UHGV-0037719_62	COG0028	N/A	N/A	Acetolactate synthase large subunit or other thiamine pyrophosphate-requiring enzyme	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0037719	Yes	35,949	58	100	1
UHGV-0174393	No	34,347	58	100	1
UHGV-0039076	No	26,185	57	70	1