vOTU vOTU-045149

vOTU: vOTU-045149

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-045149
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-01507 → vGENUS-02986 → vSUBGEN-03578 → vOTU-045149
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruthenibacterium
Host range breadth	Genus
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0079173
Biosample ID	N/A
Genome length (bp)	31,181 bps
CheckV completeness	100.00% (Complete)
CDS count	51
CDS density	89.98%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruthenibacterium → Ruthenibacterium lactatiformans	Total connections	1	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruthenibacterium	Total connections	18	Host agreement	94.44

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0079173_1	phrog_1129	62.5	5.5e-18	holin	lysis
UniRef90	UHGV-0079173_1	UniRef90_A0A316PMB0	166.0	0	Enolase	N/A
eggNOG-mapper	UHGV-0079173_1	1007096.BAGW01000036_gene2663	131.0	6.31e-39	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0079173_1	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0079173_1	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0079173_2	phrog_4105	79.2	4.6e-23	N/A	unknown function
eggNOG-mapper	UHGV-0079173_2	1687.BCOR_0969	59.7	0.000000000317	N/A	N/A
KOfam	UHGV-0079173_3	K01447	53.3	0.0000000000000053	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0079173_3	phrog_7698	128.8	3.2e-38	endolysin	lysis
UniRef90	UHGV-0079173_3	UniRef90_A0A316PMU2	355.0	0	N-acetylmuramoyl-L-alanine amidase domain-containing protein	N/A
eggNOG-mapper	UHGV-0079173_3	411473.RUMCAL_00325	133.0	3e-33	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0079173_3	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0079173_3	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-0079173_3	PF21086,MF_01450,NF010999,COG3830	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0079173_5	PF11514	N/A	N/A	N/A	N/A
PHROG	UHGV-0079173_6	phrog_9534	148.3	3.36312e-44	head protein	head and packaging
UniRef90	UHGV-0079173_6	UniRef90_K4Z6J0	74.7	0.00000000000471	Putative phage protein	N/A
eggNOG-mapper	UHGV-0079173_6	665956.HMPREF1032_02939	204.0	0	COG NOG18825 non supervised orthologous group	N/A
structural_annotation	UHGV-0079173_6	PF20747	N/A	N/A	N/A	N/A
PHROG	UHGV-0079173_7	phrog_538	197.8	0	minor tail protein	tail
UniRef90	UHGV-0079173_7	UniRef90_UPI000C7C9115	516.0	0	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-0079173_7	665956.HMPREF1032_02940	381.0	0	N/A	N/A
Pfam	UHGV-0079173_7	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0079173_7	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0079173_8	phrog_36410	72.7	3.5e-21	N/A	unknown function
UniRef90	UHGV-0079173_8	UniRef90_A0A3A6ECR2	393.0	0	Phage tail family protein	N/A
eggNOG-mapper	UHGV-0079173_8	665956.HMPREF1032_02941	280.0	0	Phage tail protein	N/A
structural_annotation	UHGV-0079173_8	PF16774,PF20753,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0079173_9	phrog_58	157.1	0	tail length tape measure protein	tail
UniRef90	UHGV-0079173_9	UniRef90_A0A316Q0J4	522.0	0	PblA	N/A
eggNOG-mapper	UHGV-0079173_9	1089553.Tph_c23060	252.0	0	lysine exporter protein (LysE YggA)	N/A
COG	UHGV-0079173_9	COG5185	N/A	N/A	Chromosome segregation protein NDC80, interacts with SMC proteins	N/A
structural_annotation	UHGV-0079173_9	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0079173_10	phrog_1526	91.7	5.9e-27	N/A	unknown function
UniRef90	UHGV-0079173_10	UniRef90_A0A139NAV4	73.9	0.00000000000000357	N/A	N/A
eggNOG-mapper	UHGV-0079173_10	936375.HMPREF1152_0686	86.7	3.38e-21	N/A	N/A
PHROG	UHGV-0079173_11	phrog_117	175.0	0	major tail protein	tail
UniRef90	UHGV-0079173_11	UniRef90_A0A316PMT1	336.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0079173_11	748224.HMPREF9436_00696	240.0	0	domain, Protein	N/A
COG	UHGV-0079173_11	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0079173_11	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0079173_12	phrog_123	67.4	2.4e-19	tail terminator	connector
UniRef90	UHGV-0079173_12	UniRef90_A0A139NAV0	112.0	4.1e-30	Phage-associated protein	N/A
eggNOG-mapper	UHGV-0079173_12	1321372.AQQB01000060_gene68	111.0	1.96e-30	N/A	N/A
structural_annotation	UHGV-0079173_12	PF06141	N/A	N/A	N/A	N/A
PHROG	UHGV-0079173_13	phrog_387	70.7	1.7e-20	neck protein	connector
UniRef90	UHGV-0079173_13	UniRef90_A0A139NAV7	65.5	0.00000000000215	Phage-associated protein	N/A
eggNOG-mapper	UHGV-0079173_13	908337.HMPREF9257_0534	74.3	1.15e-16	N/A	N/A
PHROG	UHGV-0079173_14	phrog_501	79.0	5.7e-23	head closure Hc1	connector
eggNOG-mapper	UHGV-0079173_14	748224.HMPREF9436_00693	157.0	0	N/A	N/A
structural_annotation	UHGV-0079173_14	PF12206,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0079173_15	phrog_137	57.1	2.5e-16	head-tail adaptor Ad1	connector
UniRef90	UHGV-0079173_15	UniRef90_E2ZGA8	144.0	3.25942e-42	Phage protein Gp19/Gp15/Gp42	N/A
structural_annotation	UHGV-0079173_15	PF09355	N/A	N/A	N/A	N/A
PHROG	UHGV-0079173_17	phrog_10	143.9	1.49939e-42	major head protein	head and packaging
UniRef90	UHGV-0079173_17	UniRef90_A0A1Y4TJU9	503.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0079173_17	748224.HMPREF9436_00690	437.0	0	Phage capsid family	N/A
Pfam	UHGV-0079173_17	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0079173_17	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0079173_17	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0079173_17	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0079173_18	phrog_194	67.8	1.6e-19	head scaffolding protein	head and packaging
UniRef90	UHGV-0079173_18	UniRef90_UPI00195B7610	153.0	2.8026e-44	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0079173_18	663278.Ethha_0497	137.0	7.37e-39	N/A	N/A
Pfam	UHGV-0079173_18	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0079173_18	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0079173_20	phrog_193	122.0	4.8e-36	head maturation protease	head and packaging
UniRef90	UHGV-0079173_20	UniRef90_A0A6N8H118	322.0	0	CdiA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0079173_20	748224.HMPREF9436_01469	302.0	0	N/A	N/A
COG	UHGV-0079173_20	COG5529	N/A	N/A	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	N/A
PHROG	UHGV-0079173_21	phrog_104	218.0	0	portal protein	head and packaging
UniRef90	UHGV-0079173_21	UniRef90_A0A316PMS0	739.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0079173_21	748224.HMPREF9436_01468	698.0	0	Phage portal protein, SPP1 Gp6-like	N/A
structural_annotation	UHGV-0079173_21	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0079173_22	phrog_9	159.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0079173_22	UniRef90_UPI001F1A3C47	620.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0079173_22	748224.HMPREF9436_01467	737.0	0	phage terminase, large subunit	N/A
COG	UHGV-0079173_22	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0079173_22	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0079173_23	PF19962	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0079173_26	PF09274,NF008671,COG4710	N/A	N/A	N/A	N/A
UniRef90	UHGV-0079173_27	UniRef90_UPI001C10AB33	87.4	3.32e-19	N/A	N/A
eggNOG-mapper	UHGV-0079173_27	428125.CLOLEP_01806	112.0	8.69e-30	N/A	N/A
structural_annotation	UHGV-0079173_27	PF07374,TIGR01636	N/A	N/A	N/A	N/A
KOfam	UHGV-0079173_29	K06919	121.4	7.5e-36	K06919; putative DNA primase/helicase	N/A
PHROG	UHGV-0079173_29	phrog_1829	757.1	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0079173_29	UniRef90_A0A316PJJ9	1574.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-0079173_29	748224.HMPREF9436_01462	830.0	0	Phage plasmid primase, P4 family	N/A
Pfam	UHGV-0079173_29	PF08706	N/A	N/A	D5 N terminal like	D5_N
Pfam	UHGV-0079173_29	PF19263	N/A	N/A	N/A	DUF5906
Pfam	UHGV-0079173_29	PF03288	N/A	N/A	Poxvirus D5 protein-like	Pox_D5
NCBIFam	UHGV-0079173_29	TIGR01613.1	N/A	N/A	phage/plasmid primase, P4 family	N/A
COG	UHGV-0079173_29	COG3378	N/A	N/A	DNA primase, phage- or plasmid-associated	N/A
structural_annotation	UHGV-0079173_29	PF08706,PF05272,PF02257,MF_04000,NF011296,COG3378,COG4983	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0079173_30	PF05037	N/A	N/A	N/A	N/A
KOfam	UHGV-0079173_31	K18959	179.9	0	uvsW; ATP-dependent DNA helicase UvsW [EC:5.6.2.4]	N/A
PHROG	UHGV-0079173_31	phrog_16	185.8	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0079173_31	UniRef90_A0A316Q0I4	899.0	0	Helicase ATP-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0079173_31	748224.HMPREF9436_01460	449.0	0	Type III restriction protein res subunit	N/A
PADLOC	UHGV-0079173_31	mREase_IV_00005	52.1	0.0000000000000071	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0079173_31	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0079173_31	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0079173_31	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0079173_31	PF04851,PF16203,MF_01489,TIGR00603,COG1061	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0079173_32	PF03838,MF_00130,TIGR00648,COG3331	N/A	N/A	N/A	N/A
PHROG	UHGV-0079173_33	phrog_1366	245.4	0	N/A	unknown function
UniRef90	UHGV-0079173_33	UniRef90_A0A1I0CM14	357.0	0	AAA domain-containing protein	N/A
eggNOG-mapper	UHGV-0079173_33	748224.HMPREF9436_01458	342.0	0	AAA domain	N/A
Pfam	UHGV-0079173_33	PF13479	N/A	N/A	AAA domain	AAA_24
COG	UHGV-0079173_33	COG0468	N/A	N/A	RecA/RadA recombinase	N/A
structural_annotation	UHGV-0079173_33	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-0079173_36	phrog_1733	53.7	0.0000000000000021	N/A	unknown function
UniRef90	UHGV-0079173_36	UniRef90_UPI00196846D9	219.0	0	cell envelope integrity protein TolA	N/A
eggNOG-mapper	UHGV-0079173_36	665956.HMPREF1032_03597	230.0	0	DNA binding	N/A
COG	UHGV-0079173_36	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
Pfam	UHGV-0079173_37	PF12957	N/A	N/A	N/A	DUF3846
COG	UHGV-0079173_37	COG4734	N/A	N/A	Antirestriction protein ArdA	N/A
UniRef90	UHGV-0079173_44	UniRef90_A0A845R4W0	89.0	8.78e-22	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0079173_44	742738.HMPREF9460_02486	70.1	0.0000000000000045	N/A	N/A
structural_annotation	UHGV-0079173_44	TIGR03070	N/A	N/A	N/A	N/A
PHROG	UHGV-0079173_45	phrog_8	63.5	5e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0079173_45	UniRef90_A0A316PFQ5	176.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0079173_45	665956.HMPREF1032_02614	135.0	1.98e-39	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0079173_45	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0079173_45	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0079173_46	phrog_87	47.4	0.00000000000028	metallo-protease	other
UniRef90	UHGV-0079173_46	UniRef90_A0A329UQ57	97.1	4.44e-23	Peptidase_M78 domain-containing protein	N/A
eggNOG-mapper	UHGV-0079173_46	411471.SUBVAR_05140	76.3	8.2e-16	N/A	N/A
structural_annotation	UHGV-0079173_46	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-0079173_49	K07339	45.8	0.000000000001	hicA; mRNA interferase HicA [EC:3.1.-.-]	N/A
PHROG	UHGV-0079173_49	phrog_353	80.3	1.5e-23	toxin	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0079173_49	UniRef90_A0A316PMD2	132.0	3.31e-39	Toxin-antitoxin system, toxin component, HicA family protein	N/A
eggNOG-mapper	UHGV-0079173_49	335541.Swol_1661	108.0	1.62e-30	Toxin-antitoxin system, toxin component, HicA family	N/A
Pfam	UHGV-0079173_49	PF07927	N/A	N/A	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
COG	UHGV-0079173_49	COG1724	N/A	N/A	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	N/A
structural_annotation	UHGV-0079173_49	PF07927,COG1724	N/A	N/A	N/A	N/A
KOfam	UHGV-0079173_50	K18843	78.4	1.2e-22	hicB; antitoxin HicB	N/A
PHROG	UHGV-0079173_50	phrog_497	79.1	7.6e-23	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0079173_50	UniRef90_A0A316PNL2	276.0	0	HicB family protein	N/A
eggNOG-mapper	UHGV-0079173_50	645991.Sgly_2660	184.0	0	HicB_like antitoxin of bacterial toxin-antitoxin system	N/A
Pfam	UHGV-0079173_50	PF15919	N/A	N/A	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
COG	UHGV-0079173_50	COG1598	N/A	N/A	Antitoxin component HicB of the HicAB toxin-antitoxin system	N/A
structural_annotation	UHGV-0079173_50	PF15919,TIGR04563,COG1598,COG4710	N/A	N/A	N/A	N/A
KOfam	UHGV-0079173_51	K07075	60.6	3.9e-17	N/A	N/A
UniRef90	UHGV-0079173_51	UniRef90_A0A316PK52	244.0	0	Toxin-antitoxin system, antitoxin component	N/A
eggNOG-mapper	UHGV-0079173_51	411483.FAEPRAA2165_00449	171.0	0	Nucleotidyltransferase substrate binding protein like	N/A
Pfam	UHGV-0079173_51	PF18765	N/A	N/A	Polymerase beta, Nucleotidyltransferase	Polbeta
COG	UHGV-0079173_51	COG1669	N/A	N/A	Predicted nucleotidyltransferase MJ0435	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0079173	Yes	31,181	57	100	1
UHGV-0474212	No	16,620	57	45	1