vOTU vOTU-045193

vOTU: vOTU-045193

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-045193
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00013 → vGENUS-00190 → vSUBGEN-31741 → vOTU-045193
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0082754
Biosample ID	SAMEA2784462
Genome length (bp)	42,079 bps
CheckV completeness	100.00% (Complete)
CDS count	72
CDS density	90.61%
tRNA count	3
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	912	Host agreement	99.23
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	19	Host agreement	89.47

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-0082754_1	PF10743,NF033787	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0082754_5	PF06718	N/A	N/A	N/A	N/A
PHROG	UHGV-0082754_7	phrog_561	110.7	1.4e-32	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0082754_7	UniRef90_UPI0011C8A287	142.0	5.23e-39	recombinase RecT	N/A
eggNOG-mapper	UHGV-0082754_7	33035.JPJF01000071_gene4462	141.0	3.68e-39	N/A	N/A
structural_annotation	UHGV-0082754_7	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
KOfam	UHGV-0082754_8	K03111	137.4	1.7e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0082754_8	phrog_44	136.6	1.4e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0082754_8	UniRef90_D4K451	280.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0082754_8	718252.FP2_06770	280.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0082754_8	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0082754_8	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0082754_8	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0082754_8	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0082754_8	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0082754_9	K02086	68.2	1.3e-19	dnaD; DNA replication protein	N/A
PHROG	UHGV-0082754_9	phrog_186	77.2	2.7e-22	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0082754_9	UniRef90_A0A6N7TLH4	264.0	0	DnaD domain protein	N/A
eggNOG-mapper	UHGV-0082754_9	877411.JMMA01000002_gene2292	69.3	0.0000000000489	N/A	N/A
Pfam	UHGV-0082754_9	PF19808	N/A	N/A	N/A	DUF6291
Pfam	UHGV-0082754_9	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-0082754_9	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
structural_annotation	UHGV-0082754_9	PF19808,PF07261,TIGR01446,COG3935	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0082754_10	PF11417	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0082754_11	PF01775,MF_00273,NF001981,COG2157	N/A	N/A	N/A	N/A
UniRef90	UHGV-0082754_13	UniRef90_A0A417H740	111.0	2.74e-28	N/A	N/A
PHROG	UHGV-0082754_16	phrog_3136	116.4	1.3e-34	N/A	unknown function
UniRef90	UHGV-0082754_16	UniRef90_A0A6N7TMC2	166.0	0	ASCH domain-containing protein	N/A
COG	UHGV-0082754_16	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0082754_16	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
KOfam	UHGV-0082754_17	K01160	52.6	0.000000000000015	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0082754_17	phrog_34	52.8	0.0000000000000088	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0082754_17	UniRef90_A0A6N7TND6	235.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0082754_17	875454.BAEW01000002_gene491	140.0	2.50006e-41	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0082754_17	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0082754_17	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0082754_17	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0082754_19	phrog_36	56.8	4.3e-16	transcriptional regulator	transcription regulation
structural_annotation	UHGV-0082754_19	PF07374,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
UniRef90	UHGV-0082754_20	UniRef90_UPI0018CC2891	119.0	1.28e-31	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0082754_20	1235790.C805_00037	112.0	1.3e-29	N/A	N/A
structural_annotation	UHGV-0082754_20	PF04218	N/A	N/A	N/A	N/A
KOfam	UHGV-0082754_21	K06909	143.2	2.49992e-42	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0082754_21	phrog_10250	176.0	0	N/A	unknown function
UniRef90	UHGV-0082754_21	UniRef90_A0A844D8I4	851.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0082754_21	411490.ANACAC_00783	491.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0082754_21	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-0082754_21	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-0082754_21	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0082754_21	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0082754_21	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0082754_22	phrog_64	125.7	1.9e-37	portal protein	head and packaging
UniRef90	UHGV-0082754_22	UniRef90_A0A6N7TNT3	868.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0082754_22	642492.Clole_2764	84.3	0.0000000000000133	phage portal protein, SPP1	N/A
Pfam	UHGV-0082754_22	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0082754_22	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0082754_24	phrog_2468	81.1	1e-23	head morphogenesis	head and packaging
UniRef90	UHGV-0082754_24	UniRef90_A0A6N7TLR7	639.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0082754_24	1504822.CCNO01000013_gene286	112.0	2.37e-24	cell adhesion	N/A
Pfam	UHGV-0082754_24	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0082754_24	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0082754_24	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0082754_26	phrog_8680	199.0	0	N/A	unknown function
UniRef90	UHGV-0082754_26	UniRef90_A0A844D688	449.0	0	N/A	N/A
eggNOG-mapper	UHGV-0082754_26	1423790.BN53_04265	179.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
Pfam	UHGV-0082754_26	PF14386	N/A	N/A	N/A	DUF4417
COG	UHGV-0082754_26	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0082754_26	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-0082754_28	phrog_5	48.7	0.0000000000002	tail completion or Neck1 protein	connector
UniRef90	UHGV-0082754_28	UniRef90_A0A6N7TNP6	302.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0082754_28	1123309.AQYB01000018_gene814	95.5	3.52e-23	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0082754_28	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0082754_28	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0082754_30	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0082754_31	phrog_247	201.1	0	major head protein	head and packaging
UniRef90	UHGV-0082754_31	UniRef90_UPI001BA5448B	243.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-0082754_31	33035.JPJF01000106_gene3132	360.0	0	N/A	N/A
structural_annotation	UHGV-0082754_31	PF20036,MF_04113,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0082754_33	phrog_17977	43.9	0.0000000000036	N/A	unknown function
UniRef90	UHGV-0082754_33	UniRef90_A0A844DHJ8	119.0	1.63e-32	Phage head closure protein	N/A
structural_annotation	UHGV-0082754_33	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0082754_34	PF13554	N/A	N/A	N/A	N/A
PHROG	UHGV-0082754_35	phrog_885	53.3	0.0000000000000033	major tail protein	tail
eggNOG-mapper	UHGV-0082754_35	1504822.CCNO01000012_gene492	97.1	1.92e-22	N/A	N/A
structural_annotation	UHGV-0082754_35	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0082754_38	phrog_9959	88.7	3.8e-26	tail length tape measure protein	tail
UniRef90	UHGV-0082754_38	UniRef90_A0A844DDD5	525.0	0	Tape measure protein	N/A
eggNOG-mapper	UHGV-0082754_38	1492737.FEM08_12070	146.0	6.17e-34	tape measure	N/A
Pfam	UHGV-0082754_38	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0082754_38	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0082754_38	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0082754_38	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0082754_39	phrog_3558	275.7	0	tail protein	tail
UniRef90	UHGV-0082754_39	UniRef90_UPI001C01D15B	682.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0082754_39	1120933.ATUY01000002_gene164	156.0	9.66e-38	Prophage endopeptidase tail	N/A
Pfam	UHGV-0082754_39	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
COG	UHGV-0082754_39	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0082754_39	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0082754_40	1235792.C808_00094	90.5	7.25e-20	phage tail	N/A
COG	UHGV-0082754_40	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0082754_40	PF05709,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0082754_42	phrog_10993	148.1	1.4013e-45	Hoc-like head decoration	head and packaging
UniRef90	UHGV-0082754_42	UniRef90_A0A1Q6KPN8	215.0	0	N/A	N/A
eggNOG-mapper	UHGV-0082754_42	718252.FP2_16970	181.0	0	N/A	N/A
structural_annotation	UHGV-0082754_42	PF19789,PF18911	N/A	N/A	N/A	N/A
UniRef90	UHGV-0082754_44	UniRef90_UPI001D07AB37	85.1	8.7e-21	XkdX family protein	N/A
eggNOG-mapper	UHGV-0082754_44	718252.FP2_16990	84.3	2.95e-21	Phage uncharacterised protein (Phage_XkdX)	N/A
structural_annotation	UHGV-0082754_44	PF09693	N/A	N/A	N/A	N/A
KOfam	UHGV-0082754_45	K07273	153.6	1.4013e-45	acm; lysozyme	N/A
PHROG	UHGV-0082754_45	phrog_291	119.3	4.1e-35	endolysin	lysis
UniRef90	UHGV-0082754_45	UniRef90_A0A564U0D3	353.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-0082754_45	718252.FP2_04890	254.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0082754_45	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0082754_45	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0082754_45	PF01183,TIGR04053,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0082754_47	phrog_15303	75.6	5.7e-22	N/A	unknown function
structural_annotation	UHGV-0082754_49	PF04545,MF_00245,NF001074,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-0082754_50	K23779	55.6	0.0000000000000014	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
PHROG	UHGV-0082754_50	phrog_1373	42.1	0.0000000000094	transcriptional regulator	transcription regulation
Pfam	UHGV-0082754_50	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0082754_50	COG1309	N/A	N/A	DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA	N/A
structural_annotation	UHGV-0082754_50	PF01381,TIGR03070,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0082754_52	phrog_3754	97.9	9e-29	N/A	unknown function
eggNOG-mapper	UHGV-0082754_52	1235790.C805_00054	108.0	5.26e-29	N/A	N/A
PHROG	UHGV-0082754_53	phrog_21718	117.6	9.4e-35	N/A	unknown function
eggNOG-mapper	UHGV-0082754_53	397290.C810_05210	98.2	8.41e-24	N/A	N/A
PHROG	UHGV-0082754_54	phrog_22984	79.4	1.4e-23	N/A	unknown function
PHROG	UHGV-0082754_55	phrog_16490	160.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0082754_55	1408437.JNJN01000043_gene803	131.0	1.91e-34	N/A	N/A
PHROG	UHGV-0082754_56	phrog_20016	208.5	0	N/A	unknown function
UniRef90	UHGV-0082754_56	UniRef90_A0A285PT46	217.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0082754_56	1226322.HMPREF1545_00077	185.0	0	N/A	N/A
structural_annotation	UHGV-0082754_56	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0082754_57	PF12510	N/A	N/A	N/A	N/A
KOfam	UHGV-0082754_59	K14059	139.0	5.90003e-41	int; integrase	N/A
PHROG	UHGV-0082754_59	phrog_1	164.0	0	integrase	integration and excision
UniRef90	UHGV-0082754_59	UniRef90_A0A6N7TNQ4	711.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0082754_59	411471.SUBVAR_05137	262.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0082754_59	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0082754_59	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0082754_59	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0082754_60	UniRef90_A0A6N7TLT0	207.0	0	Helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0082754_60	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0082754_60	PF13560,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0082754_63	321955.AAGP01000017_gene2211	56.6	0.000000155	N/A	N/A
structural_annotation	UHGV-0082754_63	PF16900,NF040991	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0082754_66	PF09202,MF_01819,NF041230,COG1321	N/A	N/A	N/A	N/A
PHROG	UHGV-0082754_67	phrog_8	46.2	0.0000000000011	transcriptional regulator	transcription regulation
UniRef90	UHGV-0082754_67	UniRef90_UPI001966F1BB	84.3	1.87e-18	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0082754_67	1226322.HMPREF1545_00148	82.0	1.36e-18	Transcriptional	N/A
Pfam	UHGV-0082754_67	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0082754_67	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
UniRef90	UHGV-0082754_68	UniRef90_A0A1C7FQD9	82.4	3.15e-19	Transcriptional regulator	N/A
Pfam	UHGV-0082754_68	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0082754_68	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0082754_69	K07741	142.2	7.79963e-42	antB; anti-repressor protein	N/A
PHROG	UHGV-0082754_69	phrog_63	113.9	1.8e-33	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0082754_69	UniRef90_A0A6N7TLD1	260.0	0	Phage antirepressor Ant	N/A
eggNOG-mapper	UHGV-0082754_69	1051631.F8HGQ0_9CAUD	216.0	0	DNA binding	N/A
Pfam	UHGV-0082754_69	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
Pfam	UHGV-0082754_69	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
structural_annotation	UHGV-0082754_69	PF03374,PF08346,TIGR02681,COG3561,COG3645	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0082754_70	760568.Desku_0919	96.3	7.29e-22	N/A	N/A
structural_annotation	UHGV-0082754_70	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
PHROG	UHGV-0082754_71	phrog_463	230.5	0	anti-repressor	transcription regulation
UniRef90	UHGV-0082754_71	UniRef90_UPI00137B411D	283.0	0	ORF6C domain-containing protein	N/A
eggNOG-mapper	UHGV-0082754_71	411490.ANACAC_00813	236.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0082754_71	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0082754_71	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-0082754_71	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0082754_71	PF10552,PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
PHROG	UHGV-0082754_72	phrog_4433	141.9	5.29971e-42	N/A	unknown function
UniRef90	UHGV-0082754_72	UniRef90_A0A6M5C839	99.0	4.51e-23	Putative ADP-ribosyltransferase	N/A
eggNOG-mapper	UHGV-0082754_72	33035.JPJF01000122_gene2458	103.0	2.97e-24	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0082754_72	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0082754_72	PF12120,NF000066	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0082754	Yes	42,079	55	100	1
UHGV-1435257	No	28,943	56	69	1
UHGV-1405214	No	28,707	56	68	1