vOTU vOTU-045281

vOTU: vOTU-045281

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-045281
Number of genomes	5
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-01961 → vGENUS-03394 → vSUBGEN-06312 → vOTU-045281
Host lineage	Bacteria → Firmicutes_C → Negativicutes → Veillonellales → Megasphaeraceae → Megasphaera
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0088902
Biosample ID	SAMEA3449289
Genome length (bp)	37,236 bps
CheckV completeness	100.00% (Complete)
CDS count	57
CDS density	93.15%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_C → Negativicutes → Veillonellales → Megasphaeraceae → Megasphaera	Total connections	8	Host agreement	75
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0088902_1	phrog_17147	291.9	0	N/A	unknown function
UniRef90	UHGV-0088902_1	UniRef90_A0A374JQW7	370.0	0	N/A	N/A
eggNOG-mapper	UHGV-0088902_1	478749.BRYFOR_08557	214.0	0	N/A	N/A
Pfam	UHGV-0088902_3	PF04255	N/A	N/A	N/A	DUF433
KOfam	UHGV-0088902_4	K07273	204.7	0	acm; lysozyme	N/A
PHROG	UHGV-0088902_4	phrog_291	212.6	0	endolysin	lysis
UniRef90	UHGV-0088902_4	UniRef90_A0A3F3PBL6	307.0	0	LysM domain-containing protein	N/A
eggNOG-mapper	UHGV-0088902_4	1235798.C817_00299	250.0	0	family 25	N/A
Pfam	UHGV-0088902_4	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-0088902_4	PF08230	N/A	N/A	CW_7 repeat	CW_7
Pfam	UHGV-0088902_4	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-0088902_4	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0088902_4	PF01183,PF01476,TIGR02899,COG3757,COG1388	N/A	N/A	N/A	N/A
PHROG	UHGV-0088902_5	phrog_1129	75.9	3.5e-22	holin	lysis
UniRef90	UHGV-0088902_5	UniRef90_U2Q4W5	117.0	1.67e-32	Holin family protein	N/A
eggNOG-mapper	UHGV-0088902_5	1256908.HMPREF0373_00463	117.0	2.81e-33	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0088902_5	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0088902_5	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0088902_6	phrog_4105	107.7	6e-32	N/A	unknown function
UniRef90	UHGV-0088902_6	UniRef90_A0A8D9UHA9	124.0	8.94e-35	Holin protein	N/A
eggNOG-mapper	UHGV-0088902_6	742733.HMPREF9469_05011	150.0	0	N/A	N/A
KOfam	UHGV-0088902_7	K14059	212.8	0	int; integrase	N/A
PHROG	UHGV-0088902_7	phrog_1	210.3	0	integrase	integration and excision
UniRef90	UHGV-0088902_7	UniRef90_UPI00041838CC	320.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0088902_7	1123263.AUKY01000012_gene1957	320.0	0	Pfam:Integrase_AP2	N/A
Pfam	UHGV-0088902_7	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-0088902_7	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0088902_7	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0088902_7	PF00589,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0088902_8	K22300	55.7	0.0000000000000012	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0088902_8	phrog_8	62.8	8.3e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0088902_8	UniRef90_A0A374REM2	85.5	2.95e-19	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0088902_8	1215915.BN193_09255	65.9	0.0000000000162	Peptidase S24-like	N/A
Pfam	UHGV-0088902_8	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0088902_8	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
UniRef90	UHGV-0088902_9	UniRef90_A0A1Y4IQK9	82.8	2e-19	N/A	N/A
eggNOG-mapper	UHGV-0088902_9	1229751.R9QLK3_9CAUD	70.9	0.00000000000000191	N/A	N/A
Pfam	UHGV-0088902_9	PF05339	N/A	N/A	N/A	DUF739
structural_annotation	UHGV-0088902_9	PF05339,NF002773,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0088902_13	phrog_270	92.0	9.2e-27	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0088902_13	UniRef90_A0A417QFV0	150.0	4.17993e-41	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0088902_13	411490.ANACAC_00800	153.0	8.05747e-43	N/A	N/A
structural_annotation	UHGV-0088902_13	PF01475,NF006999,COG0735	N/A	N/A	N/A	N/A
PHROG	UHGV-0088902_14	phrog_9804	75.3	9.4e-22	N/A	unknown function
Pfam	UHGV-0088902_14	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-0088902_14	PF11417	N/A	N/A	N/A	N/A
KOfam	UHGV-0088902_15	K00571	120.5	2.1e-35	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0088902_15	phrog_67	98.3	1.3e-30	DNA methyltransferase	other
UniRef90	UHGV-0088902_15	UniRef90_A0A1Y4LYP2	462.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0088902_15	35241.Q9XJE8_BPTU2	355.0	0	helicase activity	N/A
PADLOC	UHGV-0088902_15	MTase_II_00157	95.9	1.8e-29	Type II methyltransferase	RM
Pfam	UHGV-0088902_15	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
structural_annotation	UHGV-0088902_15	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
KOfam	UHGV-0088902_16	K01520	65.2	1.2e-18	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-0088902_16	phrog_135	84.2	1.2e-24	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0088902_16	UniRef90_A0A2P7PYU8	160.0	0	Deoxyuridine 5'-triphosphate nucleotidohydrolase	N/A
eggNOG-mapper	UHGV-0088902_16	12336.Q332E8_CBCP	152.0	5.46506e-44	dUTPase	N/A
Pfam	UHGV-0088902_16	PF00692	N/A	N/A	dUTPase	dUTPase
PHROG	UHGV-0088902_21	phrog_434	148.0	6.72623e-44	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0088902_21	UniRef90_A0A372SUY9	227.0	0	Recombinase	N/A
eggNOG-mapper	UHGV-0088902_21	428127.EUBDOL_01507	216.0	0	YqaJ-like viral recombinase domain	N/A
Pfam	UHGV-0088902_21	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0088902_21	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0088902_21	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0088902_21	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-0088902_22	phrog_674	143.2	1.80067e-42	N/A	unknown function
UniRef90	UHGV-0088902_22	UniRef90_A0A0U3FXX5	107.0	1.06e-23	Phage-related protein	N/A
eggNOG-mapper	UHGV-0088902_22	411901.BACCAC_02353	89.0	1.64e-17	N/A	N/A
Pfam	UHGV-0088902_22	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0088902_22	PF07083	N/A	N/A	N/A	N/A
KOfam	UHGV-0088902_23	K07455	199.6	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0088902_23	phrog_148	219.3	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0088902_23	UniRef90_UPI001C10F0CE	309.0	0	recombinase RecT	N/A
eggNOG-mapper	UHGV-0088902_23	428127.EUBDOL_01509	301.0	0	RecT family	N/A
Pfam	UHGV-0088902_23	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0088902_23	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0088902_23	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0088902_23	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0088902_24	phrog_1770	67.0	3.8e-19	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0088902_24	536233.CLO_1822	144.0	1.52994e-41	N/A	N/A
structural_annotation	UHGV-0088902_24	PF02075,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
KOfam	UHGV-0088902_25	K03111	129.4	4.6e-38	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0088902_25	phrog_44	127.6	9.9e-38	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0088902_25	UniRef90_UPI000414260D	114.0	1.39e-29	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0088902_25	1123263.AUKY01000072_gene2101	114.0	2.33e-30	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0088902_25	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0088902_25	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0088902_25	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0088902_25	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0088902_25	PF00436,MF_00984,NF005579,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0088902_26	phrog_5968	111.1	7.2e-33	replisome organizer	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0088902_26	UniRef90_R6LWZ9	221.0	0	DnaD and phage-associated domain	N/A
eggNOG-mapper	UHGV-0088902_26	718252.FP2_01000	159.0	2.38221e-44	N/A	N/A
Pfam	UHGV-0088902_26	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
COG	UHGV-0088902_26	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0088902_26	PF09681,TIGR01714,COG3388	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0088902_29	428127.EUBDOL_01518	48.5	0.00000431	N/A	N/A
PHROG	UHGV-0088902_31	phrog_24490	41.3	0.000000000022	N/A	unknown function
eggNOG-mapper	UHGV-0088902_31	1235793.C809_02212	48.1	0.00000914	N/A	N/A
structural_annotation	UHGV-0088902_36	PF04545,MF_00674,NF009180,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-0088902_39	phrog_7245	50.4	0.000000000000031	anti-restriction protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0088902_39	UniRef90_A0A1V0QDP9	68.2	0.000000000136	ArdcN domain-containing protein	N/A
eggNOG-mapper	UHGV-0088902_39	477641.MODMU_0808	67.4	0.000000000246	repeat protein	N/A
Pfam	UHGV-0088902_39	PF08401	N/A	N/A	N-terminal domain of anti-restriction factor ArdC	ArdcN
COG	UHGV-0088902_39	COG4227	N/A	N/A	Antirestriction protein ArdC	N/A
PHROG	UHGV-0088902_41	phrog_144	53.7	0.0000000000000051	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0088902_41	UniRef90_UPI00189741C6	82.8	6.8e-18	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0088902_41	33035.JPJF01000113_gene2099	70.5	0.000000000000118	HNH nucleases	N/A
COG	UHGV-0088902_41	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0088902_42	phrog_361	80.7	2e-23	terminase small subunit	head and packaging
UniRef90	UHGV-0088902_42	UniRef90_UPI000307376F	122.0	1.08e-33	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0088902_42	1033744.CAEL01000029_gene1286	85.1	1.02e-19	Phage terminase, small subunit	N/A
Pfam	UHGV-0088902_42	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0088902_42	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0088902_43	phrog_9	286.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0088902_43	UniRef90_R5VJG5	775.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0088902_43	491915.Aflv_0661	717.0	0	Phage Terminase	N/A
Pfam	UHGV-0088902_43	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0088902_43	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0088902_43	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0088902_43	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0088902_44	phrog_12	189.0	0	portal protein	head and packaging
UniRef90	UHGV-0088902_44	UniRef90_UPI000CF8AFF7	498.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0088902_44	1232446.BAIE02000002_gene824	375.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0088902_44	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0088902_44	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0088902_44	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0088902_44	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0088902_45	K06904	164.6	0	N/A	N/A
PHROG	UHGV-0088902_45	phrog_80	188.2	0	head maturation protease	head and packaging
UniRef90	UHGV-0088902_45	UniRef90_UPI000CF8530D	236.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0088902_45	398512.JQKC01000009_gene450	214.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0088902_45	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0088902_45	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0088902_45	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0088902_45	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0088902_46	phrog_10	184.6	0	major head protein	head and packaging
UniRef90	UHGV-0088902_46	UniRef90_UPI000CF94CB7	373.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0088902_46	33035.JPJF01000039_gene273	299.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0088902_46	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0088902_46	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0088902_46	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0088902_46	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0088902_48	phrog_19734	62.5	5.2e-18	N/A	unknown function
eggNOG-mapper	UHGV-0088902_48	1232446.BAIE02000002_gene828	54.7	0.0000000685	N/A	N/A
structural_annotation	UHGV-0088902_48	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0088902_49	1232446.BAIE02000002_gene829	102.0	5.61e-27	N/A	N/A
structural_annotation	UHGV-0088902_49	PF05657	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0088902_50	908340.HMPREF9406_2573	92.0	2.3e-21	N/A	N/A
structural_annotation	UHGV-0088902_50	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0088902_51	phrog_88	92.5	5e-27	major tail protein	tail
UniRef90	UHGV-0088902_51	UniRef90_A0A1C6CIL7	132.0	2.49e-34	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0088902_51	33035.JPJF01000039_gene278	64.7	0.000000000441	N/A	N/A
NCBIFam	UHGV-0088902_51	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0088902_51	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0088902_53	phrog_1533	394.8	0	tail length tape measure protein	tail
UniRef90	UHGV-0088902_53	UniRef90_A0A1M5PWE6	177.0	9.26959e-42	Phage tail tape measure protein, TP901 family, core region	N/A
eggNOG-mapper	UHGV-0088902_53	1220551.SCHR_00610	184.0	3.08286e-44	Phage tail tape measure protein	N/A
Pfam	UHGV-0088902_53	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0088902_53	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0088902_53	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
PHROG	UHGV-0088902_54	phrog_33	62.0	1.5e-17	distal tail protein Dit	tail
UniRef90	UHGV-0088902_54	UniRef90_A0A173Z1X4	119.0	3.75e-29	Phage-related protein	N/A
eggNOG-mapper	UHGV-0088902_54	908337.HMPREF9257_0528	78.6	0.0000000000000122	phage tail	N/A
COG	UHGV-0088902_54	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0088902_54	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0088902_55	phrog_1067	312.9	0	minor head protein	head and packaging
UniRef90	UHGV-0088902_55	UniRef90_UPI000CF99656	412.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0088902_55	1160721.RBI_I01574	270.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0088902_55	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
Pfam	UHGV-0088902_55	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
NCBIFam	UHGV-0088902_55	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0088902_55	COG4926	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0088902_57	phrog_19280	54.3	0.0000000000000018	N/A	unknown function
Pfam	UHGV-0088902_57	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0088902	Yes	37,236	39	100	1
UHGV-1467470	No	35,529	39	100	1
UHGV-1394068	No	16,787	40	51	1
UHGV-2132666	No	16,535	38	50	1
UHGV-2126386	No	16,442	40	50	1