vOTU vOTU-045398

vOTU: vOTU-045398

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-045398
Number of genomes	2
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00079 → vGENUS-00223 → vSUBGEN-20479 → vOTU-045398
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1367388
Biosample ID	SAMEA3708469
Genome length (bp)	38,680 bps
CheckV completeness	100.00% (Complete)
CDS count	63
CDS density	93.09%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger	Total connections	281	Host agreement	87.54
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1367388_2	K14059	167.0	0	int; integrase	N/A
PHROG	UHGV-1367388_2	phrog_1	157.6	0	integrase	integration and excision
UniRef90	UHGV-1367388_2	UniRef90_A0A1Y4T0F9	355.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1367388_2	748224.HMPREF9436_03382	277.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1367388_2	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1367388_2	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1367388_2	PF00589,PF14659,MF_01808,NF007246,COG4973	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1367388_3	500635.MITSMUL_05163	73.9	0.00000000000557	N/A	N/A
structural_annotation	UHGV-1367388_4	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-1367388_5	phrog_8	52.9	0.0000000000000087	transcriptional regulator	transcription regulation
UniRef90	UHGV-1367388_5	UniRef90_UPI001C009F10	84.0	5.32e-20	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1367388_5	665950.HMPREF1025_02561	59.7	0.0000000000278	sequence-specific DNA binding	N/A
Pfam	UHGV-1367388_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1367388_5	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1367388_5	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-1367388_6	UniRef90_A0A367GIH6	99.4	3.38e-25	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1367388_6	762051.LKI_01980	48.1	0.00000452	N/A	N/A
Pfam	UHGV-1367388_6	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-1367388_6	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-1367388_6	PF05339,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1367388_7	596152.DesU5LDRAFT_1910	95.9	8.72e-22	N/A	N/A
structural_annotation	UHGV-1367388_7	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
PHROG	UHGV-1367388_9	phrog_7964	171.2	0	N/A	unknown function
UniRef90	UHGV-1367388_9	UniRef90_C6L9Y5	122.0	1e-31	Bacterial transferase hexapeptide repeat protein	N/A
eggNOG-mapper	UHGV-1367388_9	411470.RUMGNA_02189	123.0	2.26e-32	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	N/A
Pfam	UHGV-1367388_9	PF18836	N/A	N/A	YdcK Beta solenoid repeat	B_solenoid_ydck
COG	UHGV-1367388_9	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A
structural_annotation	UHGV-1367388_9	NF040481	N/A	N/A	N/A	N/A
PHROG	UHGV-1367388_12	phrog_659	204.1	0	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1367388_12	UniRef90_UPI0009E55993	219.0	0	N/A	N/A
eggNOG-mapper	UHGV-1367388_12	1507.HMPREF0262_00431	198.0	0	N/A	N/A
Pfam	UHGV-1367388_12	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-1367388_12	PF06378,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-1367388_13	phrog_1389	65.9	5.2e-19	N/A	unknown function
eggNOG-mapper	UHGV-1367388_13	883156.HMPREF9282_01223	60.8	0.000000000203	N/A	N/A
structural_annotation	UHGV-1367388_13	PF11056,TIGR04376,COG1842	N/A	N/A	N/A	N/A
PHROG	UHGV-1367388_14	phrog_7566	55.0	0.0000000000000011	N/A	unknown function
eggNOG-mapper	UHGV-1367388_14	1507.HMPREF0262_00433	50.4	0.00000134	N/A	N/A
KOfam	UHGV-1367388_15	K03111	139.9	2.59997e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1367388_15	phrog_44	150.8	7.00649e-45	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1367388_15	UniRef90_A0A1Q6T150	168.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1367388_15	411471.SUBVAR_04646	164.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1367388_15	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1367388_15	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1367388_15	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1367388_15	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1367388_15	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1367388_16	phrog_4973	59.3	5.7e-17	N/A	unknown function
UniRef90	UHGV-1367388_16	UniRef90_A0A3D3Y5F2	75.1	2.38e-16	DNA-binding protein	N/A
Pfam	UHGV-1367388_16	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-1367388_16	PF14090,MF_01586,TIGR00373,COG5625	N/A	N/A	N/A	N/A
PHROG	UHGV-1367388_17	phrog_270	108.7	6.7e-32	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1367388_17	UniRef90_UPI00143119EB	92.8	8.07e-19	replication initiator protein A	N/A
eggNOG-mapper	UHGV-1367388_17	97139.C824_02821	112.0	4.65e-28	N/A	N/A
structural_annotation	UHGV-1367388_17	PF07106,MF_01177,TIGR01714,COG5529	N/A	N/A	N/A	N/A
KOfam	UHGV-1367388_18	K02314	235.7	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-1367388_18	phrog_19	240.0	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1367388_18	UniRef90_UPI000C7E331E	273.0	0	replicative DNA helicase	N/A
eggNOG-mapper	UHGV-1367388_18	665956.HMPREF1032_01442	151.0	3.25e-38	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-1367388_18	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-1367388_18	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-1367388_18	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-1367388_18	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
KOfam	UHGV-1367388_21	K01160	60.6	4.4e-17	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1367388_21	phrog_34	64.3	2.1e-18	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1367388_21	UniRef90_UPI0018ABA1B6	157.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1367388_21	875454.BAEW01000002_gene491	112.0	2.13e-30	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1367388_21	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1367388_21	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1367388_21	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1367388_26	phrog_9958	117.9	6e-35	N/A	unknown function
UniRef90	UHGV-1367388_26	UniRef90_UPI001D08A241	166.0	0	N/A	N/A
eggNOG-mapper	UHGV-1367388_26	1160721.RBI_I01591	138.0	1.3e-38	N/A	N/A
structural_annotation	UHGV-1367388_26	PF19789	N/A	N/A	N/A	N/A
PHROG	UHGV-1367388_28	phrog_11237	85.3	7.7e-25	N/A	unknown function
eggNOG-mapper	UHGV-1367388_28	610130.Closa_0738	100.0	1.25e-25	N/A	N/A
structural_annotation	UHGV-1367388_28	NF009167	N/A	N/A	N/A	N/A
PHROG	UHGV-1367388_29	phrog_606	79.5	4e-23	terminase small subunit	head and packaging
UniRef90	UHGV-1367388_29	UniRef90_UPI00195648BB	158.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-1367388_29	445972.ANACOL_01838	137.0	1.01e-39	DNA-packaging protein gp3	N/A
Pfam	UHGV-1367388_29	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-1367388_29	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-1367388_30	K06909	402.8	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1367388_30	phrog_3717	157.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-1367388_30	UniRef90_UPI001C3B9235	605.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1367388_30	411471.SUBVAR_06507	567.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1367388_30	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1367388_30	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1367388_30	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1367388_30	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1367388_30	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1367388_31	phrog_64	166.5	0	portal protein	head and packaging
UniRef90	UHGV-1367388_31	UniRef90_UPI0018A8A301	610.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1367388_31	673376.F2VHW1_9CAUD	213.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1367388_31	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1367388_31	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-1367388_32	phrog_8680	234.1	0	N/A	unknown function
UniRef90	UHGV-1367388_32	UniRef90_UPI00189ACAD3	315.0	0	N/A	N/A
eggNOG-mapper	UHGV-1367388_32	411470.RUMGNA_02208	219.0	0	N/A	N/A
Pfam	UHGV-1367388_32	PF14386	N/A	N/A	N/A	DUF4417
structural_annotation	UHGV-1367388_32	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-1367388_34	phrog_595	111.4	8.4e-33	head maturation protease	head and packaging
UniRef90	UHGV-1367388_34	UniRef90_A0A7X5E1T7	409.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-1367388_34	1504822.CCNO01000013_gene286	184.0	0	cell adhesion	N/A
Pfam	UHGV-1367388_34	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-1367388_34	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1367388_34	PF06152,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1367388_36	phrog_5	74.2	2.5e-21	tail completion or Neck1 protein	connector
UniRef90	UHGV-1367388_36	UniRef90_A0A3A9EIF3	185.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1367388_36	1280685.AUKC01000004_gene1630	111.0	1.25e-29	N/A	N/A
Pfam	UHGV-1367388_36	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-1367388_36	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-1367388_36	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
UniRef90	UHGV-1367388_37	UniRef90_A0A6B9SU02	75.1	0.000000000000395	Fibronectin autolysin	N/A
structural_annotation	UHGV-1367388_37	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-1367388_38	phrog_544	120.7	1.2e-35	major head protein	head and packaging
UniRef90	UHGV-1367388_38	UniRef90_A0A1C6B5R0	334.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1367388_38	476272.RUMHYD_01776	314.0	0	N/A	N/A
structural_annotation	UHGV-1367388_38	PF06673,PF13629,MF_04119,TIGR04387,NF005261,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1367388_41	phrog_17977	80.2	1.5e-23	N/A	unknown function
UniRef90	UHGV-1367388_41	UniRef90_UPI00141211AB	85.5	3.8e-19	head-tail adaptor protein	N/A
structural_annotation	UHGV-1367388_41	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1367388_42	phrog_17405	44.0	0.0000000000032	head protein	head and packaging
structural_annotation	UHGV-1367388_42	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-1367388_43	phrog_885	98.9	4.4e-29	major tail protein	tail
UniRef90	UHGV-1367388_43	UniRef90_A0A843J9F0	164.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1367388_43	1111121.HMPREF1247_0789	180.0	0	N/A	N/A
structural_annotation	UHGV-1367388_43	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1367388_44	phrog_18646	47.0	0.00000000000044	N/A	unknown function
PHROG	UHGV-1367388_46	phrog_20920	124.0	5.7e-37	N/A	unknown function
UniRef90	UHGV-1367388_46	UniRef90_S6B1J4	100.0	3.77e-25	Small-conductance mechanosensitive channel	N/A
eggNOG-mapper	UHGV-1367388_46	1536770.R50345_22870	122.0	2.01e-34	N/A	N/A
structural_annotation	UHGV-1367388_46	PF16674	N/A	N/A	N/A	N/A
PHROG	UHGV-1367388_47	phrog_6900	226.9	0	tail length tape measure protein	tail
UniRef90	UHGV-1367388_47	UniRef90_A0A0D0SGC8	318.0	0	Phage minor tail protein	N/A
eggNOG-mapper	UHGV-1367388_47	1437608.BBIA_2554	278.0	0	phage tail tape measure protein	N/A
COG	UHGV-1367388_47	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1367388_47	PF20155,MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-1367388_48	phrog_36410	61.0	1.3e-17	N/A	unknown function
UniRef90	UHGV-1367388_48	UniRef90_A0A160INM5	82.8	0.00000000000000839	Phage tail protein	N/A
eggNOG-mapper	UHGV-1367388_48	748224.HMPREF9436_00700	132.0	3.03e-34	Phage tail protein	N/A
structural_annotation	UHGV-1367388_48	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1367388_49	phrog_538	200.4	0	minor tail protein	tail
UniRef90	UHGV-1367388_49	UniRef90_A0A6N8HZE3	133.0	1.01e-32	Siphovirus ReqiPepy6 Gp37-like protein	N/A
eggNOG-mapper	UHGV-1367388_49	748224.HMPREF9436_03324	210.0	0	N/A	N/A
Pfam	UHGV-1367388_49	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-1367388_49	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1367388_50	phrog_9534	197.8	0	head protein	head and packaging
eggNOG-mapper	UHGV-1367388_50	748224.HMPREF9436_00702	189.0	0	COG NOG18825 non supervised orthologous group	N/A
structural_annotation	UHGV-1367388_50	PF21567	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1367388_51	PF10651	N/A	N/A	N/A	N/A
KOfam	UHGV-1367388_53	K02395	80.2	4.5e-23	flgJ; peptidoglycan hydrolase FlgJ	N/A
PHROG	UHGV-1367388_53	phrog_7698	164.0	0	endolysin	lysis
UniRef90	UHGV-1367388_53	UniRef90_A0A1C5V282	243.0	0	Exo-glucosaminidase lytG	N/A
eggNOG-mapper	UHGV-1367388_53	877414.ATWA01000019_gene2055	238.0	0	Cpl-7 lysozyme C-terminal domain protein	N/A
Pfam	UHGV-1367388_53	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-1367388_53	PF01832	N/A	N/A	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
COG	UHGV-1367388_53	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-1367388_53	PF01510,PF18342,MF_04111,NF008758,COG3023,COG4991	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1367388_54	97138.C820_00248	62.4	0.0000000000107	N/A	N/A
PHROG	UHGV-1367388_55	phrog_1129	86.8	1.1e-25	holin	lysis
UniRef90	UHGV-1367388_55	UniRef90_A0A1G9U2I2	105.0	1.32e-27	Phage holin family Hol44, holin superfamily V	N/A
eggNOG-mapper	UHGV-1367388_55	476272.RUMHYD_03138	88.6	1.05e-21	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-1367388_55	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1367388_55	PF16079	N/A	N/A	N/A	N/A
PHROG	UHGV-1367388_56	phrog_3754	91.2	1.2e-26	N/A	unknown function
eggNOG-mapper	UHGV-1367388_56	476272.RUMHYD_01764	146.0	7.14662e-44	N/A	N/A
PHROG	UHGV-1367388_57	phrog_21718	111.3	6.9e-33	N/A	unknown function
eggNOG-mapper	UHGV-1367388_57	397290.C810_05210	92.8	1.27e-21	N/A	N/A
PHROG	UHGV-1367388_58	phrog_22984	74.2	5.7e-23	N/A	unknown function
PHROG	UHGV-1367388_59	phrog_16490	166.9	0	N/A	unknown function
eggNOG-mapper	UHGV-1367388_59	1408437.JNJN01000043_gene803	96.3	4.23e-21	N/A	N/A
PHROG	UHGV-1367388_60	phrog_20016	196.4	0	N/A	unknown function
UniRef90	UHGV-1367388_60	UniRef90_A0A285PT46	200.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1367388_60	1226322.HMPREF1545_00077	178.0	0	N/A	N/A
structural_annotation	UHGV-1367388_60	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1367388_61	PF12510	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1367388_62	1226322.HMPREF1545_00079	64.7	0.00000000000768	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1367388	Yes	38,680	50	100	1
UHGV-0098052	No	38,680	50	100	1