vOTU vOTU-045416

vOTU: vOTU-045416

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-045416
Number of genomes	4
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00513 → vGENUS-00603 → vSUBGEN-39042 → vOTU-045416
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales
Host range breadth	Order
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0099054
Biosample ID	N/A
Genome length (bp)	45,386 bps
CheckV completeness	100.00% (Complete)
CDS count	74
CDS density	89.66%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales	Total connections	5	Host agreement	80
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → UBA1081 → UBA1081 sp900543395	Total connections	2	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0099054_3	UniRef90_UPI001D07B715	93.6	6.42e-20	DNA-packaging protein	N/A
structural_annotation	UHGV-0099054_3	PF16677	N/A	N/A	N/A	N/A
UniRef90	UHGV-0099054_4	UniRef90_A0A3E3DHB1	69.7	0.000000000000145	Immunoglobulin	N/A
eggNOG-mapper	UHGV-0099054_4	1226325.HMPREF1548_01699	67.0	0.000000000000272	N/A	N/A
structural_annotation	UHGV-0099054_4	PF21076	N/A	N/A	N/A	N/A
PHROG	UHGV-0099054_5	phrog_8841	449.5	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0099054_5	UniRef90_A0A1C6FPW9	452.0	0	Superfamily II helicase and inactivated derivatives	N/A
eggNOG-mapper	UHGV-0099054_5	742738.HMPREF9460_02495	397.0	0	N/A	N/A
Pfam	UHGV-0099054_5	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-0099054_5	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-0099054_5	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0099054_5	PF06048,PF18662,MF_00016,NF011296,COG5519	N/A	N/A	N/A	N/A
KOfam	UHGV-0099054_6	K02316	79.7	4.5e-23	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0099054_6	phrog_11992	84.4	1.9e-24	N/A	unknown function
UniRef90	UHGV-0099054_6	UniRef90_A0A845N2C1	87.8	4.95e-18	DNA primase	N/A
eggNOG-mapper	UHGV-0099054_6	585394.RHOM_01555	86.3	3.2e-18	CHC2 zinc finger domain protein	N/A
PADLOC	UHGV-0099054_6	drt-cluster192	59.7	7.9e-17	DRT	DRT
Pfam	UHGV-0099054_6	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-0099054_6	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-0099054_6	PF01807	N/A	N/A	N/A	N/A
PHROG	UHGV-0099054_8	phrog_3490	120.9	1e-35	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0099054_8	UniRef90_A0A1C6FNL5	168.0	0	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0099054_8	357809.Cphy_2986	151.0	8.40779e-45	N/A	N/A
Pfam	UHGV-0099054_8	PF02732	N/A	N/A	ERCC4 domain	ERCC4
structural_annotation	UHGV-0099054_8	PF03834,NF040956,COG1948	N/A	N/A	N/A	N/A
PHROG	UHGV-0099054_9	phrog_1233	60.2	4.2e-17	N/A	unknown function
UniRef90	UHGV-0099054_9	UniRef90_UPI0013ED6412	65.5	0.00000000000849	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0099054_9	218284.CCDN010000001_gene857	55.5	0.0000000109	N/A	N/A
structural_annotation	UHGV-0099054_9	PF06114	N/A	N/A	N/A	N/A
KOfam	UHGV-0099054_10	K03111	106.1	5.9e-31	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0099054_10	phrog_44	111.5	9.6e-33	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0099054_10	UniRef90_A0A3D3U8Y9	128.0	2.1e-35	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0099054_10	537013.CLOSTMETH_00062	95.1	8.19e-23	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0099054_10	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0099054_10	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0099054_10	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0099054_10	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0099054_10	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0099054_11	phrog_561	147.6	8.54792e-44	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0099054_11	UniRef90_UPI001EE8E2AA	219.0	0	recombinase RecT	N/A
eggNOG-mapper	UHGV-0099054_11	33035.JPJF01000071_gene4462	195.0	0	N/A	N/A
Pfam	UHGV-0099054_11	PF03837	N/A	N/A	RecT family	RecT
structural_annotation	UHGV-0099054_11	PF03837,TIGR01913	N/A	N/A	N/A	N/A
KOfam	UHGV-0099054_13	K10906	93.5	4.5e-31	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	N/A
PHROG	UHGV-0099054_13	phrog_412	236.5	0	exonuclease VIII	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0099054_13	UniRef90_A0A1C6GFL6	243.0	0	Exodeoxyribonuclease 8	N/A
eggNOG-mapper	UHGV-0099054_13	1454004.AW11_02382	197.0	0	N/A	N/A
Pfam	UHGV-0099054_13	PF12684	N/A	N/A	N/A	DUF3799
COG	UHGV-0099054_13	COG1074	N/A	N/A	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-0099054_13	PF12684,MF_03030,TIGR01896,COG2887	N/A	N/A	N/A	N/A
UniRef90	UHGV-0099054_19	UniRef90_A0A417H740	109.0	3.11e-28	N/A	N/A
Pfam	UHGV-0099054_19	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0099054_19	NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-0099054_20	phrog_15198	44.3	0.0000000000034	N/A	unknown function
UniRef90	UHGV-0099054_20	UniRef90_A0A3A6ECV8	115.0	7.56e-32	N/A	N/A
eggNOG-mapper	UHGV-0099054_20	411470.RUMGNA_00214	71.2	0.0000000000000282	N/A	N/A
Pfam	UHGV-0099054_20	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0099054_20	PF04448,NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-0099054_25	phrog_323	48.8	0.0000000000000017	endonuclease	DNA, RNA and nucleotide metabolism
Pfam	UHGV-0099054_25	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
dbAPIS	UHGV-0099054_25	APIS006	N/A	N/A	Trigger programmed cell death (PCD) by P4 prophage.	N/A
Pfam	UHGV-0099054_27	PF01527	N/A	N/A	Transposase	HTH_Tnp_1
Pfam	UHGV-0099054_27	PF02796	N/A	N/A	Helix-turn-helix domain of resolvase	HTH_7
structural_annotation	UHGV-0099054_31	PF21291,NF041951,COG1513	N/A	N/A	N/A	N/A
UniRef90	UHGV-0099054_35	UniRef90_A0A124JZL2	58.2	0.0000000217	HTH cro/C1-type domain-containing protein	N/A
COG	UHGV-0099054_35	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0099054_35	PF12844,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
Pfam	UHGV-0099054_38	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0099054_38	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0099054_39	K14059	187.1	0	int; integrase	N/A
PHROG	UHGV-0099054_39	phrog_1	168.0	0	integrase	integration and excision
UniRef90	UHGV-0099054_39	UniRef90_A0A328U998	195.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0099054_39	1226322.HMPREF1545_00144	175.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0099054_39	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0099054_39	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0099054_39	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0099054_39	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0099054_40	PF16734,PF01402	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0099054_42	PF02255,TIGR00823,COG1447	N/A	N/A	N/A	N/A
UniRef90	UHGV-0099054_45	UniRef90_A0A843IZ65	63.5	0.0000000000091	Sigma70_r4 domain-containing protein	N/A
structural_annotation	UHGV-0099054_45	PF04545,MF_00245,NF001074,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0099054_46	phrog_6918	56.4	4.6e-16	holin	lysis
UniRef90	UHGV-0099054_46	UniRef90_G9YP36	52.4	0.00000244	Phage holin, LL-H family	N/A
eggNOG-mapper	UHGV-0099054_46	1519439.JPJG01000059_gene1950	51.2	0.000000983	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-0099054_46	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
structural_annotation	UHGV-0099054_46	PF09682,TIGR01673	N/A	N/A	N/A	N/A
KOfam	UHGV-0099054_47	K07273	160.9	0	acm; lysozyme	N/A
PHROG	UHGV-0099054_47	phrog_291	138.8	5.19994e-41	endolysin	lysis
UniRef90	UHGV-0099054_47	UniRef90_A0A1C5NS63	131.0	2.08e-32	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-0099054_47	999411.HMPREF1092_03301	129.0	8.97e-33	family 25	N/A
Pfam	UHGV-0099054_47	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0099054_47	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-0099054_47	PF01183,COG3757	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0099054_49	428125.CLOLEP_01435	55.5	0.000000514	N/A	N/A
PHROG	UHGV-0099054_50	phrog_13589	163.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0099054_50	428125.CLOLEP_01434	214.0	0	N/A	N/A
PHROG	UHGV-0099054_52	phrog_15594	91.4	6.3e-27	N/A	unknown function
eggNOG-mapper	UHGV-0099054_52	1118055.CAGU01000013_gene763	65.9	0.00000000000108	N/A	N/A
structural_annotation	UHGV-0099054_52	PF16640,TIGR04488	N/A	N/A	N/A	N/A
PHROG	UHGV-0099054_53	phrog_4105	72.8	4.6e-21	N/A	unknown function
eggNOG-mapper	UHGV-0099054_53	397288.C806_00056	85.9	2.18e-20	N/A	N/A
PHROG	UHGV-0099054_54	phrog_18593	123.8	1.3e-36	N/A	unknown function
UniRef90	UHGV-0099054_54	UniRef90_A0A2Y9CAD1	172.0	0	Carbohydrate binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0099054_54	411460.RUMTOR_02099	143.0	9.21998e-41	N/A	N/A
Pfam	UHGV-0099054_54	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-0099054_54	PF14600	N/A	N/A	N/A	N/A
PHROG	UHGV-0099054_56	phrog_2295	78.9	6e-23	N/A	unknown function
eggNOG-mapper	UHGV-0099054_56	439375.Oant_2297	57.0	0.00000671	Phage tail-collar fibre protein	N/A
Pfam	UHGV-0099054_56	PF21722	N/A	N/A	Glycine-rich domain	Gly_rich_2
COG	UHGV-0099054_56	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
structural_annotation	UHGV-0099054_56	PF12810,PF20944	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0099054_57	756499.Desde_2424	62.4	0.000000000601	N/A	N/A
PHROG	UHGV-0099054_58	phrog_13879	182.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0099054_58	411902.CLOBOL_00124	291.0	0	N/A	N/A
structural_annotation	UHGV-0099054_58	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-0099054_59	phrog_1194	73.7	2.3e-21	N/A	unknown function
eggNOG-mapper	UHGV-0099054_59	1232449.BAHV02000010_gene2724	106.0	8.17e-28	N/A	N/A
structural_annotation	UHGV-0099054_59	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0099054_60	phrog_28918	81.8	6.6e-29	N/A	unknown function
eggNOG-mapper	UHGV-0099054_60	1121866.AUGK01000003_gene1437	179.0	8.47786e-43	phage tail tape measure protein	N/A
COG	UHGV-0099054_60	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
UniRef90	UHGV-0099054_62	UniRef90_UPI001D0975F6	66.6	0.00000000000667	N/A	N/A
PHROG	UHGV-0099054_63	phrog_158	50.9	0.000000000000029	major tail protein	tail
eggNOG-mapper	UHGV-0099054_63	469596.HMPREF9488_01310	112.0	2.48e-29	N/A	N/A
structural_annotation	UHGV-0099054_63	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0099054_64	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0099054_66	1298920.KI911353_gene2656	72.4	0.0000000000000131	N/A	N/A
UniRef90	UHGV-0099054_67	UniRef90_A0A1V5X694	97.8	2.79e-24	Phage gp6-like head-tail connector protein	N/A
structural_annotation	UHGV-0099054_67	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0099054_68	phrog_247	242.4	0	major head protein	head and packaging
UniRef90	UHGV-0099054_68	UniRef90_UPI000A1C9CC1	437.0	0	coat protein	N/A
eggNOG-mapper	UHGV-0099054_68	903814.ELI_3208	430.0	0	N/A	N/A
Pfam	UHGV-0099054_68	PF20036	N/A	N/A	Major capsid protein 13-like	Gp13-like
structural_annotation	UHGV-0099054_68	PF20036,MF_04113,TIGR04387,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0099054_69	UniRef90_A0A7C7EK05	67.4	0.000000000197	N/A	N/A
structural_annotation	UHGV-0099054_69	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0099054_70	phrog_64	166.1	0	portal protein	head and packaging
UniRef90	UHGV-0099054_70	UniRef90_A0A7X9GQD9	387.0	0	Phage portal protein (Fragment)	N/A
eggNOG-mapper	UHGV-0099054_70	1121866.AUGK01000003_gene1429	362.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0099054_70	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0099054_70	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0099054_71	phrog_38	176.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0099054_71	UniRef90_UPI000419A6BC	373.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0099054_71	1232453.BAIF02000058_gene1623	387.0	0	TIGRFAM Phage	N/A
COG	UHGV-0099054_71	COG5410	N/A	N/A	N/A	N/A
KOfam	UHGV-0099054_72	K06400	190.0	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0099054_72	phrog_95	177.9	0	integrase	integration and excision
UniRef90	UHGV-0099054_72	UniRef90_A0A3D4G6V8	379.0	0	Resolvase	N/A
eggNOG-mapper	UHGV-0099054_72	697329.Rumal_3466	219.0	0	resolvase	N/A
Pfam	UHGV-0099054_72	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0099054_72	PF07508	N/A	N/A	Recombinase	Recombinase
COG	UHGV-0099054_72	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0099054_72	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0099054	Yes	45,386	56	100	1
UHGV-1497034	No	45,401	56	98	1
UHGV-2135334	No	24,015	58	52	1
UHGV-2135333	No	21,121	55	46	1