vOTU vOTU-045441

vOTU: vOTU-045441

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-045441
Number of genomes	4
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00040 → vSUBFAM-00849 → vGENUS-06877 → vSUBGEN-39179 → vOTU-045441
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae
Host range breadth	Family
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0101145
Biosample ID	SAMEA3541471
Genome length (bp)	41,025 bps
CheckV completeness	100.00% (Complete)
CDS count	63
CDS density	90.38%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae	Total connections	64	Host agreement	98.44
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Dysosmobacter → Dysosmobacter welbionis	Total connections	8	Host agreement	75

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0101145_1	phrog_21718	123.0	1.8e-36	N/A	unknown function
eggNOG-mapper	UHGV-0101145_1	397290.C810_05210	72.8	0.0000000000000642	N/A	N/A
PHROG	UHGV-0101145_2	phrog_22984	125.3	1.9e-37	N/A	unknown function
PHROG	UHGV-0101145_3	phrog_374	193.9	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0101145_3	1507.HMPREF0262_01169	134.0	1.55e-36	N/A	N/A
structural_annotation	UHGV-0101145_3	PF17375	N/A	N/A	N/A	N/A
PHROG	UHGV-0101145_4	phrog_16490	295.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0101145_4	1226322.HMPREF1545_00076	231.0	0	N/A	N/A
PHROG	UHGV-0101145_5	phrog_20016	191.6	0	N/A	unknown function
UniRef90	UHGV-0101145_5	UniRef90_A0A285PT46	187.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0101145_5	1226322.HMPREF1545_00077	167.0	0	N/A	N/A
structural_annotation	UHGV-0101145_5	PF18573,NF033147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0101145_7	693746.OBV_01600	228.0	0	N/A	N/A
UniRef90	UHGV-0101145_8	UniRef90_U2AS96	420.0	0	MuF_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0101145_8	693746.OBV_01590	400.0	0	N/A	N/A
PHROG	UHGV-0101145_9	phrog_7940	202.8	0	N/A	unknown function
UniRef90	UHGV-0101145_9	UniRef90_A0A810QHS1	338.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-0101145_9	546271.Selsp_1341	212.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0101145_9	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
COG	UHGV-0101145_9	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0101145_9	PF02498,PF03374,TIGR02681,COG3617	N/A	N/A	N/A	N/A
PHROG	UHGV-0101145_11	phrog_8684	87.2	4.1e-26	N/A	unknown function
UniRef90	UHGV-0101145_11	UniRef90_UPI00195CB2B3	93.2	6.88e-22	YopX family protein	N/A
eggNOG-mapper	UHGV-0101145_11	1226322.HMPREF1545_00036	83.6	6.27e-19	YopX protein	N/A
Pfam	UHGV-0101145_11	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0101145_11	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0101145_11	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-0101145_13	phrog_22543	43.8	0.00000000000026	N/A	unknown function
PHROG	UHGV-0101145_14	phrog_7711	149.4	1.12104e-44	N/A	unknown function
eggNOG-mapper	UHGV-0101145_14	1226322.HMPREF1545_00031	248.0	0	N/A	N/A
PHROG	UHGV-0101145_15	phrog_38832	133.7	6.8e-40	N/A	unknown function
eggNOG-mapper	UHGV-0101145_15	665956.HMPREF1032_03087	106.0	2.5e-27	N/A	N/A
eggNOG-mapper	UHGV-0101145_16	665956.HMPREF1032_03084	56.2	0.00000000371	N/A	N/A
PHROG	UHGV-0101145_17	phrog_25732	124.3	3.8e-37	N/A	unknown function
PHROG	UHGV-0101145_19	phrog_599	41.1	0.000000000034	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0101145_19	UniRef90_A0A4D7ANR2	116.0	1.01e-31	Lar family restriction alleviation protein	N/A
eggNOG-mapper	UHGV-0101145_19	742738.HMPREF9460_04054	74.3	7.55e-16	Restriction alleviation protein Lar	N/A
Pfam	UHGV-0101145_19	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
structural_annotation	UHGV-0101145_19	PF14354,NF007260	N/A	N/A	N/A	N/A
PHROG	UHGV-0101145_20	phrog_424	94.0	6.3e-28	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0101145_20	UniRef90_UPI0015715A3D	340.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0101145_20	641112.ACOK01000119_gene1505	325.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
Pfam	UHGV-0101145_20	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0101145_20	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
PHROG	UHGV-0101145_21	phrog_244	70.3	4.1e-20	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0101145_21	UniRef90_A0A841R0Q1	160.0	0	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-0101145_21	1123250.KB908417_gene653	144.0	2.49431e-43	N/A	N/A
structural_annotation	UHGV-0101145_21	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
PHROG	UHGV-0101145_22	phrog_15768	143.1	7.00649e-45	N/A	unknown function
UniRef90	UHGV-0101145_22	UniRef90_A0A4D7AS84	360.0	0	N/A	N/A
eggNOG-mapper	UHGV-0101145_22	203119.Cthe_2466	91.3	5e-19	N/A	N/A
AcrCatalog	UHGV-0101145_22	cluster_38323	119.0	4.05e-35	NA	N/A
Pfam	UHGV-0101145_22	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0101145_22	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-0101145_23	K03111	41.8	0.000000000025	ssb; single-strand DNA-binding protein	N/A
UniRef90	UHGV-0101145_23	UniRef90_A0A4D7AYE9	272.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0101145_23	1226322.HMPREF1545_04080	50.4	0.00000784	Single-strand binding protein family	N/A
Pfam	UHGV-0101145_23	PF00436	N/A	N/A	Single-strand binding protein family	SSB
COG	UHGV-0101145_23	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0101145_23	PF00436,MF_00984,NF006297,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0101145_24	phrog_155	142.8	2.29953e-42	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0101145_24	UniRef90_UPI001C126E67	247.0	0	ERF family protein	N/A
eggNOG-mapper	UHGV-0101145_24	97138.C820_00777	175.0	0	ERF superfamily	N/A
Pfam	UHGV-0101145_24	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0101145_24	PF04404,COG4712	N/A	N/A	N/A	N/A
COG	UHGV-0101145_26	COG0145	N/A	N/A	N-methylhydantoinase A/oxoprolinase/acetone carboxylase, beta subunit	N/A
structural_annotation	UHGV-0101145_26	PF01381,PF13613,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0101145_27	phrog_22529	87.7	8.6e-26	N/A	unknown function
UniRef90	UHGV-0101145_27	UniRef90_A0A7T7IG06	231.0	0	3D domain-containing protein	N/A
eggNOG-mapper	UHGV-0101145_27	1226322.HMPREF1545_00012	208.0	0	3D domain	N/A
Pfam	UHGV-0101145_27	PF06725	N/A	N/A	3D domain	3D
COG	UHGV-0101145_27	COG3584	N/A	N/A	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	N/A
structural_annotation	UHGV-0101145_27	PF06725,MF_02071,NF040670,COG3584	N/A	N/A	N/A	N/A
KOfam	UHGV-0101145_28	K21919	78.1	7.6e-23	KCTD9; BTB/POZ domain-containing protein KCTD9	N/A
PHROG	UHGV-0101145_28	phrog_9562	127.0	4.3e-38	N/A	unknown function
UniRef90	UHGV-0101145_28	UniRef90_A0A1C5W9L2	246.0	0	Type III effector pipB2	N/A
eggNOG-mapper	UHGV-0101145_28	1226322.HMPREF1545_00011	241.0	0	Pentapeptide repeats (8 copies)	N/A
Pfam	UHGV-0101145_28	PF00805	N/A	N/A	Pentapeptide repeats (8 copies)	Pentapeptide
Pfam	UHGV-0101145_28	PF19062	N/A	N/A	N/A	DUF5758
COG	UHGV-0101145_28	COG1357	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0101145_28	PF19062,PF13599	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0101145_29	PF06003,COG5475	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0101145_31	PF12728	N/A	N/A	N/A	N/A
PHROG	UHGV-0101145_34	phrog_14556	51.4	0.000000000000015	N/A	unknown function
eggNOG-mapper	UHGV-0101145_34	1120998.AUFC01000015_gene1569	75.1	0.0000000000000272	competence protein COMEC	N/A
COG	UHGV-0101145_34	COG2333	N/A	N/A	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	N/A
UniRef90	UHGV-0101145_37	UniRef90_UPI000E31DAF9	91.3	8.59e-23	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0101145_37	445974.CLORAM_02965	87.0	6.49e-22	N/A	N/A
structural_annotation	UHGV-0101145_37	PF05339,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0101145_38	K01356	146.9	2.39622e-43	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0101145_38	phrog_4	115.2	7.1e-34	transcriptional repressor	transcription regulation
UniRef90	UHGV-0101145_38	UniRef90_R6N9Z1	222.0	0	SOS-response transcriptional repressors (RecA-mediated autopeptidases)	N/A
eggNOG-mapper	UHGV-0101145_38	1121423.JONT01000002_gene2372	170.0	0	Peptidase S24-like	N/A
Pfam	UHGV-0101145_38	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0101145_38	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0101145_38	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0101145_38	PF00717,PF01381,MF_00015,TIGR00498,COG1974	N/A	N/A	N/A	N/A
KOfam	UHGV-0101145_40	K14059	190.5	0	int; integrase	N/A
PHROG	UHGV-0101145_40	phrog_1	186.8	0	integrase	integration and excision
UniRef90	UHGV-0101145_40	UniRef90_A0A4D7AYG4	729.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0101145_40	693746.OBV_01970	394.0	0	Phage integrase family	N/A
Pfam	UHGV-0101145_40	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0101145_40	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0101145_40	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0101145_41	UniRef90_UPI0008F814CA	66.6	0.00000000000231	helix-turn-helix domain-containing protein	N/A
structural_annotation	UHGV-0101145_42	PF17917	N/A	N/A	N/A	N/A
PHROG	UHGV-0101145_43	phrog_15863	167.9	0	N/A	unknown function
UniRef90	UHGV-0101145_43	UniRef90_A0A810QAR9	300.0	0	Molecular chaperone DnaJ	N/A
eggNOG-mapper	UHGV-0101145_43	693746.OBV_01780	253.0	0	DnaJ molecular chaperone homology domain	N/A
COG	UHGV-0101145_43	COG2214	N/A	N/A	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	N/A
PHROG	UHGV-0101145_44	phrog_33872	43.9	0.0000000000048	N/A	unknown function
eggNOG-mapper	UHGV-0101145_45	1519439.JPJG01000053_gene1371	55.1	0.00000000202	N/A	N/A
Pfam	UHGV-0101145_45	PF05534	N/A	N/A	HicB family	HicB
UniRef90	UHGV-0101145_46	UniRef90_A0A4D7AM67	266.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0101145_46	1519439.JPJG01000011_gene59	84.3	1.62e-18	N/A	N/A
eggNOG-mapper	UHGV-0101145_48	1519439.JPJG01000011_gene57	134.0	2.88e-38	N/A	N/A
structural_annotation	UHGV-0101145_48	PF11650	N/A	N/A	N/A	N/A
PHROG	UHGV-0101145_50	phrog_422	131.7	5.6e-39	major head protein	head and packaging
UniRef90	UHGV-0101145_50	UniRef90_K1TJJ5	313.0	0	Gp7 (Fragment)	N/A
eggNOG-mapper	UHGV-0101145_50	693746.OBV_01700	461.0	0	N/A	N/A
structural_annotation	UHGV-0101145_50	PF19821,PF13287,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0101145_51	K06909	141.9	6.19934e-42	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0101145_51	phrog_979	149.2	1.4013e-45	terminase large subunit	head and packaging
UniRef90	UHGV-0101145_51	UniRef90_A0A4D7AXL6	970.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0101145_51	693746.OBV_01690	696.0	0	phage Terminase large subunit	N/A
Pfam	UHGV-0101145_51	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0101145_51	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0101145_51	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-0101145_52	UniRef90_A0A4D7ASB8	1226.0	0	N/A	N/A
eggNOG-mapper	UHGV-0101145_52	1519439.JPJG01000011_gene54	764.0	0	N/A	N/A
structural_annotation	UHGV-0101145_52	PF11134,MF_03027,NF010237,TIGR03511,COG2319	N/A	N/A	N/A	N/A
PHROG	UHGV-0101145_53	phrog_156	100.1	2.1e-30	portal protein	head and packaging
eggNOG-mapper	UHGV-0101145_53	693746.OBV_01670	779.0	0	N/A	N/A
structural_annotation	UHGV-0101145_53	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0101145_55	phrog_10993	607.6	0	Hoc-like head decoration	head and packaging
UniRef90	UHGV-0101145_55	UniRef90_U2SK79	771.0	0	N/A	N/A
eggNOG-mapper	UHGV-0101145_55	1226322.HMPREF1545_00064	771.0	0	N/A	N/A
Pfam	UHGV-0101145_55	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0101145_55	PF19789,PF19081,PF09136,MF_04116,NF032891,COG3401	N/A	N/A	N/A	N/A
PHROG	UHGV-0101145_56	phrog_22773	43.8	0.0000000000052	N/A	unknown function
PHROG	UHGV-0101145_57	phrog_2310	59.6	3.2e-17	N/A	unknown function
PHROG	UHGV-0101145_58	phrog_937	50.6	0.00000000000002	hemolysin	other
eggNOG-mapper	UHGV-0101145_58	445972.ANACOL_03381	117.0	7.49e-33	N/A	N/A
PHROG	UHGV-0101145_59	phrog_23092	156.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0101145_59	1226322.HMPREF1545_02799	142.0	2.12016e-42	N/A	N/A
PHROG	UHGV-0101145_60	phrog_355	58.0	1.5e-16	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0101145_60	UniRef90_A0A3R6TX12	197.0	0	N/A	N/A
eggNOG-mapper	UHGV-0101145_60	97138.C820_00250	132.0	5.86e-39	N/A	N/A
Pfam	UHGV-0101145_60	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-0101145_60	PF14359,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0101145_61	phrog_13256	74.8	6.7e-22	N/A	unknown function
eggNOG-mapper	UHGV-0101145_61	1226322.HMPREF1545_00132	88.2	3.74e-22	N/A	N/A
PHROG	UHGV-0101145_62	phrog_21825	118.0	9.4e-35	endolysin	lysis
UniRef90	UHGV-0101145_62	UniRef90_A0A1C5WDQ0	407.0	0	CHAP domain	N/A
eggNOG-mapper	UHGV-0101145_62	693746.OBV_18290	215.0	0	CHAP domain	N/A
Pfam	UHGV-0101145_62	PF05257	N/A	N/A	CHAP domain	CHAP
COG	UHGV-0101145_62	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0101145_62	PF00877,TIGR02594,COG0791	N/A	N/A	N/A	N/A
UniRef90	UHGV-0101145_63	UniRef90_U2R3E6	134.0	4.00001e-40	KORA domain-containing protein	N/A
structural_annotation	UHGV-0101145_63	PF16509,MF_00245,NF001066,COG2739	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0101145	Yes	41,025	53	100	1
UHGV-0384070	No	41,025	53	100	1
UHGV-1474265	No	40,919	53	98	1
UHGV-1739223	No	17,872	52	44	1