vOTU vOTU-045600

vOTU: vOTU-045600

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-045600
Number of genomes	3
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-103 → CAG-103 sp900757655
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00581 → vGENUS-00476 → vSUBGEN-33586 → vOTU-045600
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-103
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0108976
Biosample ID	SAMEA3708872
Genome length (bp)	42,725 bps
CheckV completeness	100.00% (Complete)
CDS count	48
CDS density	93.02%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-103	Total connections	390	Host agreement	91.54
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-103 → CAG-103 sp900757655	Total connections	2	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0108976_1	phrog_1129	61.0	1.7e-17	holin	lysis
UniRef90	UHGV-0108976_1	UniRef90_A0A0D8J2M2	95.5	5.03e-24	Enolase	N/A
eggNOG-mapper	UHGV-0108976_1	665956.HMPREF1032_03272	93.6	4.74e-24	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0108976_1	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0108976_1	PF06946	N/A	N/A	N/A	N/A
KOfam	UHGV-0108976_2	K14059	136.0	5.4e-40	int; integrase	N/A
PHROG	UHGV-0108976_2	phrog_1	155.2	0	integrase	integration and excision
UniRef90	UHGV-0108976_2	UniRef90_A0A810Q0Y2	425.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0108976_2	693746.OBV_43340	409.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0108976_2	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-0108976_2	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0108976_2	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0108976_2	PF00589,PF13495,MF_02055,TIGR02225,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0108976_3	phrog_4785	40.8	0.000000000039	N/A	unknown function
KOfam	UHGV-0108976_4	K07729	66.0	8.7e-19	K07729; putative transcriptional regulator	N/A
UniRef90	UHGV-0108976_4	UniRef90_R5AVU4	91.7	3.94e-23	CI-like repressor	N/A
eggNOG-mapper	UHGV-0108976_4	608538.HTH_1322	60.5	0.000000000616	PBP superfamily domain	N/A
Pfam	UHGV-0108976_4	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0108976_4	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0108976_4	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0108976_5	K22300	59.8	7.2e-17	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0108976_5	phrog_4	47.3	0.00000000000056	transcriptional repressor	transcription regulation
UniRef90	UHGV-0108976_5	UniRef90_K1UM29	145.0	1.02995e-41	Helix-turn-helix domain protein (Fragment)	N/A
eggNOG-mapper	UHGV-0108976_5	903814.ELI_1263	127.0	2.2e-36	Helix-turn-helix domain	N/A
Pfam	UHGV-0108976_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0108976_5	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0108976_5	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0108976_7	1131462.DCF50_p2449	55.5	0.000000316	Bacterial Ig-like domain 2	N/A
NCBIFam	UHGV-0108976_7	NF033223.2	N/A	N/A	YHYH domain-containing protein	N/A
COG	UHGV-0108976_7	COG5492	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0108976_9	1235835.C814_03153	70.1	0.00000000000000428	N/A	N/A
structural_annotation	UHGV-0108976_9	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0108976_11	PF13560,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0108976_12	K00558	80.0	2.5e-23	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0108976_12	phrog_116	90.9	1.2e-26	DNA methyltransferase	other
UniRef90	UHGV-0108976_12	UniRef90_K1R461	244.0	0	DNA-cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0108976_12	693746.OBV_08830	160.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0108976_12	oMTase_00004	119.1	6e-35	orphan methyltransferase	RM
Pfam	UHGV-0108976_12	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0108976_12	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
KOfam	UHGV-0108976_13	K00558	43.7	6.7e-20	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0108976_13	phrog_16528	84.3	7.3e-25	DNA methyltransferase	other
UniRef90	UHGV-0108976_13	UniRef90_A0A1C5KYC3	230.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0108976_13	657322.FPR_26610	229.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
PADLOC	UHGV-0108976_13	oMTase_00004	113.8	0	orphan methyltransferase	RM
Pfam	UHGV-0108976_13	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0108976_13	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-0108976_15	phrog_434	314.2	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0108976_15	UniRef90_UPI000952E6A4	297.0	0	YqaJ viral recombinase family protein	N/A
eggNOG-mapper	UHGV-0108976_15	1121344.JHZO01000003_gene985	278.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-0108976_15	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0108976_15	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0108976_15	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0108976_15	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0108976_16	PF12844,MF_00535,NF041951,COG5499	N/A	N/A	N/A	N/A
KOfam	UHGV-0108976_17	K07455	288.3	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0108976_17	phrog_148	280.7	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0108976_17	UniRef90_U2SBP2	369.0	0	Recombination and repair protein RecT	N/A
eggNOG-mapper	UHGV-0108976_17	1226322.HMPREF1545_00015	369.0	0	RecT family	N/A
Pfam	UHGV-0108976_17	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0108976_17	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0108976_17	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0108976_17	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
KOfam	UHGV-0108976_18	K03111	145.3	6.7963e-43	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0108976_18	phrog_44	140.4	1.29998e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0108976_18	UniRef90_A0A1W1YRF9	181.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0108976_18	1226322.HMPREF1545_04080	176.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0108976_18	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0108976_18	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0108976_18	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0108976_18	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0108976_18	PF00436,MF_00984,NF005242,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0108976_19	phrog_9474	122.7	4e-36	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0108976_19	UniRef90_A0A1I7FTR4	116.0	5.31e-27	DnaD and phage-associated domain-containing protein	N/A
eggNOG-mapper	UHGV-0108976_19	644966.Tmar_0029	109.0	1.13e-24	HNH endonuclease	N/A
COG	UHGV-0108976_19	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0108976_22	phrog_38832	46.6	0.00000000000062	N/A	unknown function
eggNOG-mapper	UHGV-0108976_22	665956.HMPREF1032_00143	50.1	0.00000476	N/A	N/A
PHROG	UHGV-0108976_25	phrog_474	115.5	8e-34	phosphofructokinase	other
UniRef90	UHGV-0108976_25	UniRef90_A0A1Y4SQK6	115.0	1.25e-30	N/A	N/A
eggNOG-mapper	UHGV-0108976_25	428125.CLOLEP_01367	112.0	1.61e-30	N/A	N/A
Pfam	UHGV-0108976_25	PF19905	N/A	N/A	N/A	DUF6378
structural_annotation	UHGV-0108976_25	PF19905	N/A	N/A	N/A	N/A
KOfam	UHGV-0108976_26	K01160	46.4	0.0000000000012	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0108976_26	phrog_1682	71.0	2e-20	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0108976_26	UniRef90_A0A174WGH7	115.0	2.77e-30	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-0108976_26	1235790.C805_00029	114.0	1.83e-31	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-0108976_26	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0108976_26	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
UniRef90	UHGV-0108976_28	UniRef90_A0A1Q9JGI6	118.0	2.1e-31	RHH_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0108976_28	1095750.HMPREF9970_2261	117.0	1.06e-31	N/A	N/A
structural_annotation	UHGV-0108976_28	PF03869,NF041793,COG4691	N/A	N/A	N/A	N/A
PHROG	UHGV-0108976_30	phrog_1206	40.7	0.0000000000079	terminase small subunit	head and packaging
KOfam	UHGV-0108976_31	K06909	127.5	1.5e-37	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0108976_31	phrog_979	130.2	6.50001e-40	terminase large subunit	head and packaging
UniRef90	UHGV-0108976_31	UniRef90_A0A810Q5R0	612.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0108976_31	1410650.JHWL01000003_gene2834	572.0	0	N/A	N/A
Pfam	UHGV-0108976_31	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0108976_31	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0108976_31	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0108976_32	phrog_156	295.3	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0108976_32	1410650.JHWL01000003_gene2833	526.0	0	N/A	N/A
structural_annotation	UHGV-0108976_32	PF16510,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
KOfam	UHGV-0108976_33	K07584	41.0	0.00000000003	N/A	N/A
PHROG	UHGV-0108976_33	phrog_4478	49.0	0.000000000000053	peptidase	other
Pfam	UHGV-0108976_33	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0108976_33	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0108976_33	PF04327,NF011124,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0108976_34	phrog_13908	192.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0108976_34	1410650.JHWL01000003_gene2831	120.0	7.35e-29	N/A	N/A
PHROG	UHGV-0108976_35	phrog_1357	219.4	0	major head protein	head and packaging
UniRef90	UHGV-0108976_35	UniRef90_A0A2V2CFL5	625.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0108976_35	1410650.JHWL01000003_gene2830	275.0	0	N/A	N/A
NCBIFam	UHGV-0108976_35	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0108976_35	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0108976_36	phrog_15239	50.0	0.000000000000053	N/A	unknown function
PHROG	UHGV-0108976_37	phrog_12105	129.7	1.5e-38	N/A	unknown function
eggNOG-mapper	UHGV-0108976_37	1226322.HMPREF1545_03850	84.7	1.95e-19	N/A	N/A
PHROG	UHGV-0108976_38	phrog_511	181.1	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0108976_38	1410650.JHWL01000003_gene2827	256.0	0	N/A	N/A
structural_annotation	UHGV-0108976_38	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0108976_40	phrog_38190	63.4	9e-21	N/A	unknown function
eggNOG-mapper	UHGV-0108976_40	762211.BSTEL_0610	70.1	0.00000000000302	N/A	N/A
Pfam	UHGV-0108976_41	PF03406	N/A	N/A	Phage tail fibre repeat	Phage_fiber_2
structural_annotation	UHGV-0108976_42	PF00629,NF033675	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0108976_43	1410650.JHWL01000003_gene2815	117.0	1.31e-25	N/A	N/A
PHROG	UHGV-0108976_44	phrog_22978	748.3	0	N/A	unknown function
UniRef90	UHGV-0108976_44	UniRef90_A0A1Y4WLF7	620.0	0	PBECR5 domain-containing protein	N/A
eggNOG-mapper	UHGV-0108976_44	1410650.JHWL01000003_gene2814	349.0	0	N/A	N/A
structural_annotation	UHGV-0108976_45	PF20622,NF033814,COG2372	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0108976_46	411473.RUMCAL_00420	61.6	0.000000608	nuclear chromosome segregation	N/A
COG	UHGV-0108976_46	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
KOfam	UHGV-0108976_47	K01447	80.6	3.1e-23	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0108976_47	phrog_5182	147.0	2.10195e-43	endolysin	lysis
UniRef90	UHGV-0108976_47	UniRef90_R5AZE6	266.0	0	N-acetylmuramoyl-L-alanine amidase family 2	N/A
eggNOG-mapper	UHGV-0108976_47	397288.C806_00777	202.0	0	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
Pfam	UHGV-0108976_47	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0108976_47	PF00395	N/A	N/A	S-layer homology domain	SLH
COG	UHGV-0108976_47	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0108976_47	PF01510,MF_04111,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-0108976_48	phrog_1863	59.7	1.3e-17	N/A	unknown function
UniRef90	UHGV-0108976_48	UniRef90_UPI001F223E8B	68.2	0.000000000000329	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-0108976_48	1226322.HMPREF1545_04027	65.9	0.000000000000438	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0108976	Yes	42,725	60	100	1
UHGV-1279595	No	28,766	61	69	1
UHGV-1404635	No	28,766	61	69	1