vOTU vOTU-045769

vOTU: vOTU-045769

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-045769
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00027 → vSUBFAM-00190 → vGENUS-02821 → vSUBGEN-24501 → vOTU-045769
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae
Host range breadth	Family
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0117907
Biosample ID	SAMEA4431950
Genome length (bp)	49,308 bps
CheckV completeness	100.00% (Complete)
CDS count	80
CDS density	91.15%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae	Total connections	93	Host agreement	100
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0117907_4	phrog_159	47.7	0.00000000000017	RuvC-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
structural_annotation	UHGV-0117907_4	PF02075,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
KOfam	UHGV-0117907_5	K03427	76.4	4.3e-22	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	N/A
PHROG	UHGV-0117907_5	phrog_5696	259.4	0	N/A	unknown function
UniRef90	UHGV-0117907_5	UniRef90_A0A6N9P8V9	196.0	0	SAM-dependent DNA methyltransferase	N/A
eggNOG-mapper	UHGV-0117907_5	742733.HMPREF9469_05064	195.0	0	N-6 DNA Methylase	N/A
PADLOC	UHGV-0117907_5	MTase_I_00004	42.3	0.000000000014	Type I methyltransferase	RM
Pfam	UHGV-0117907_5	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-0117907_5	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-0117907_5	COG0286	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0117907_6	PF18358	N/A	N/A	N/A	N/A
PHROG	UHGV-0117907_8	phrog_2506	67.1	2.2e-19	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0117907_8	UniRef90_UPI00082A22B0	66.2	0.00000000569	PD-(D/E)XK nuclease family protein	N/A
eggNOG-mapper	UHGV-0117907_8	1499968.TCA2_4616	71.2	0.0000000000174	DNA catabolic process, exonucleolytic	N/A
COG	UHGV-0117907_8	COG1468	N/A	N/A	CRISPR/Cas system-associated exonuclease Cas4, RecB family	N/A
structural_annotation	UHGV-0117907_8	PF01930,MF_03030,TIGR00372,COG5377	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0117907_9	PF01775,MF_00273,NF010188,COG2157	N/A	N/A	N/A	N/A
KOfam	UHGV-0117907_10	K03553	183.8	0	recA; recombination protein RecA	N/A
PHROG	UHGV-0117907_10	phrog_97	174.4	0	UvsX-like recombinase	other
UniRef90	UHGV-0117907_10	UniRef90_UPI001BCFCE00	151.0	8.48e-40	recombinase RecA	N/A
eggNOG-mapper	UHGV-0117907_10	469616.FMAG_01147	141.0	2.02e-36	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage	N/A
Pfam	UHGV-0117907_10	PF00154	N/A	N/A	recA bacterial DNA recombination protein	RecA
COG	UHGV-0117907_10	COG0468	N/A	N/A	RecA/RadA recombinase	N/A
structural_annotation	UHGV-0117907_10	PF00154,MF_00268,TIGR02012,COG0468	N/A	N/A	N/A	N/A
KOfam	UHGV-0117907_11	K02337	728.7	0	dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]	N/A
PHROG	UHGV-0117907_11	phrog_405	653.4	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0117907_11	UniRef90_A0A843GPT9	841.0	0	DNA-directed DNA polymerase	N/A
eggNOG-mapper	UHGV-0117907_11	1123371.ATXH01000024_gene1024	410.0	0	Bacterial DNA polymerase III alpha subunit	N/A
Pfam	UHGV-0117907_11	PF02811	N/A	N/A	PHP domain	PHP
Pfam	UHGV-0117907_11	PF07733	N/A	N/A	Bacterial DNA polymerase III alpha NTPase domain	DNA_pol3_alpha
Pfam	UHGV-0117907_11	PF17657	N/A	N/A	Bacterial DNA polymerase III alpha subunit finger domain	DNA_pol3_finger
Pfam	UHGV-0117907_11	PF14579	N/A	N/A	Helix-hairpin-helix motif	HHH_6
NCBIFam	UHGV-0117907_11	TIGR00594.1	N/A	N/A	DNA polymerase III subunit alpha	N/A
COG	UHGV-0117907_11	COG0587	N/A	N/A	DNA polymerase III, alpha subunit	N/A
structural_annotation	UHGV-0117907_11	PF07733,PF02811,PF17657,PF14579,MF_01902,TIGR00594,COG0587	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0117907_12	PF08804	N/A	N/A	N/A	N/A
KOfam	UHGV-0117907_14	K02316	107.0	1.4e-31	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0117907_14	phrog_47	120.4	2.2e-35	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0117907_14	UniRef90_A0A843GN62	290.0	0	Toprim domain-containing protein	N/A
eggNOG-mapper	UHGV-0117907_14	360106.CFF8240_1745	87.4	3.4e-16	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication	N/A
Pfam	UHGV-0117907_14	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
Pfam	UHGV-0117907_14	PF13155	N/A	N/A	Toprim-like	Toprim_2
COG	UHGV-0117907_14	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-0117907_14	PF01807,PF13155,MF_00974,TIGR01391,COG0358	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0117907_16	PF06003,MF_01077,NF037951,COG1862	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0117907_18	PF07408,MF_01560,NF010187,COG4838	N/A	N/A	N/A	N/A
PHROG	UHGV-0117907_19	phrog_3754	84.8	1.2e-24	N/A	unknown function
eggNOG-mapper	UHGV-0117907_19	397290.C810_05204	70.5	0.0000000000000739	N/A	N/A
PHROG	UHGV-0117907_20	phrog_21303	43.2	0.0000000000071	N/A	unknown function
PHROG	UHGV-0117907_22	phrog_16490	94.1	6.4e-29	N/A	unknown function
eggNOG-mapper	UHGV-0117907_22	397290.C810_01328	120.0	5.27e-30	N/A	N/A
PHROG	UHGV-0117907_25	phrog_36	58.8	1.3e-16	transcriptional regulator	transcription regulation
Pfam	UHGV-0117907_25	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
NCBIFam	UHGV-0117907_25	TIGR01636.1	N/A	N/A	phage transcriptional regulator, RinA family	N/A
eggNOG-mapper	UHGV-0117907_27	397288.C806_01802	78.2	0.000000000000541	Bacterial Ig-like domain (group 2)	N/A
Pfam	UHGV-0117907_27	PF09479	N/A	N/A	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
NCBIFam	UHGV-0117907_27	TIGR02543.1	N/A	N/A	TIGR02543 family repeat protein	N/A
COG	UHGV-0117907_27	COG2340	N/A	N/A	Spore germination protein YkwD and related proteins with CAP (CSP/antigen 5/PR1) domain	N/A
structural_annotation	UHGV-0117907_27	PF09479,PF00703,NF033188	N/A	N/A	N/A	N/A
PHROG	UHGV-0117907_28	phrog_1220	167.6	0	head protein	head and packaging
UniRef90	UHGV-0117907_28	UniRef90_A0A098AU84	97.4	9.08e-20	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0117907_28	1211817.CCAT010000079_gene1381	113.0	4.69e-28	COG NOG18825 non supervised orthologous group	N/A
structural_annotation	UHGV-0117907_28	PF20747	N/A	N/A	N/A	N/A
PHROG	UHGV-0117907_29	phrog_538	143.0	2.20004e-42	minor tail protein	tail
UniRef90	UHGV-0117907_29	UniRef90_A0A843GTT7	129.0	2.08e-29	Siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-0117907_29	768704.Desmer_4453	88.2	4.34e-16	Siphovirus ReqiPepy6 Gp37-like protein	N/A
Pfam	UHGV-0117907_29	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
PHROG	UHGV-0117907_30	phrog_36410	55.9	2.2e-16	N/A	unknown function
UniRef90	UHGV-0117907_30	UniRef90_A0A7X9C3E1	135.0	5.83e-34	Phage tail family protein	N/A
eggNOG-mapper	UHGV-0117907_30	706433.HMPREF9430_01256	62.0	0.0000000396	Phage tail protein	N/A
structural_annotation	UHGV-0117907_30	PF20753,PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0117907_31	phrog_1533	503.0	0	tail length tape measure protein	tail
UniRef90	UHGV-0117907_31	UniRef90_A0A7U9JT69	474.0	0	Phage tail tape measure protein, TP901 family	N/A
eggNOG-mapper	UHGV-0117907_31	1304866.K413DRAFT_1234	474.0	0	tail tape measure protein	N/A
Pfam	UHGV-0117907_31	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0117907_31	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0117907_31	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0117907_31	PF10145,TIGR01760	N/A	N/A	N/A	N/A
PHROG	UHGV-0117907_32	phrog_6280	126.4	1.6e-37	N/A	unknown function
UniRef90	UHGV-0117907_32	UniRef90_UPI0005425395	107.0	3.23e-27	esterase	N/A
eggNOG-mapper	UHGV-0117907_32	445335.CBN_3078	97.8	3.18e-24	N/A	N/A
PHROG	UHGV-0117907_33	phrog_6686	118.6	4.5e-35	tail tube protein	tail
eggNOG-mapper	UHGV-0117907_33	871584.D9ZNE2_9CAUD	68.6	0.0000000000207	N/A	N/A
structural_annotation	UHGV-0117907_33	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0117907_34	phrog_7585	71.9	1e-20	N/A	unknown function
eggNOG-mapper	UHGV-0117907_34	1196322.A370_04060	58.9	0.00000000247	N/A	N/A
structural_annotation	UHGV-0117907_34	PF05657,COG5003	N/A	N/A	N/A	N/A
UniRef90	UHGV-0117907_35	UniRef90_A0A0C1UI84	75.1	0.00000000000000336	Bacteriophage HK97-gp10, tail-component family protein	N/A
eggNOG-mapper	UHGV-0117907_35	1443122.Z958_05860	93.6	3.49e-23	N/A	N/A
structural_annotation	UHGV-0117907_35	PF04883,TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0117907_36	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0117907_37	phrog_4020	72.4	5.2e-21	N/A	unknown function
eggNOG-mapper	UHGV-0117907_37	1443122.Z958_05850	56.2	0.00000000316	N/A	N/A
structural_annotation	UHGV-0117907_38	PF07498	N/A	N/A	N/A	N/A
PHROG	UHGV-0117907_39	phrog_29	248.9	0	major head protein	head and packaging
UniRef90	UHGV-0117907_39	UniRef90_UPI00082C04A5	373.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-0117907_39	1158612.I580_01912	305.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0117907_39	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0117907_39	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0117907_40	phrog_909	80.3	1.8e-23	major head protein	head and packaging
UniRef90	UHGV-0117907_40	UniRef90_A0A512PLH0	63.5	0.00000000023	Putative structural protein-phage associated	N/A
eggNOG-mapper	UHGV-0117907_40	1158612.I580_01911	87.0	2.75e-20	N/A	N/A
structural_annotation	UHGV-0117907_40	PF02924	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0117907_41	MF_02110	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0117907_42	TIGR00310	N/A	N/A	N/A	N/A
PHROG	UHGV-0117907_44	phrog_1657	170.1	0	head morphogenesis	head and packaging
UniRef90	UHGV-0117907_44	UniRef90_A0A1G9U003	164.0	8.40779e-45	Phage Mu protein F like protein	N/A
eggNOG-mapper	UHGV-0117907_44	1582149.A0A0A8WEF5_9CAUD	143.0	1.85e-36	Phage Mu protein F like protein	N/A
PHROG	UHGV-0117907_46	phrog_64	87.5	1.1e-25	portal protein	head and packaging
UniRef90	UHGV-0117907_46	UniRef90_A0A843GSM3	339.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0117907_46	1443122.Z958_p0036	129.0	1.75e-29	Phage portal protein, SPP1 Gp6-like	N/A
structural_annotation	UHGV-0117907_46	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0117907_47	phrog_14030	119.9	1.7e-35	N/A	unknown function
UniRef90	UHGV-0117907_47	UniRef90_A0A417IER1	215.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0117907_47	1235793.C809_02691	232.0	0	N-Acetylmuramoyl-L-alanine amidase	N/A
COG	UHGV-0117907_47	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
PHROG	UHGV-0117907_48	phrog_443	57.1	5.3e-16	holin	lysis
UniRef90	UHGV-0117907_48	UniRef90_UPI000C75746C	110.0	2.1e-30	holin	N/A
eggNOG-mapper	UHGV-0117907_48	626523.GCWU000342_01012	85.1	8.9e-21	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0117907_48	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0117907_48	PF16945	N/A	N/A	N/A	N/A
UniRef90	UHGV-0117907_50	UniRef90_UPI0005DC1460	55.1	0.00000189	SGNH/GDSL hydrolase family protein	N/A
Pfam	UHGV-0117907_50	PF00657	N/A	N/A	GDSL-like Lipase/Acylhydrolase	Lipase_GDSL
eggNOG-mapper	UHGV-0117907_51	1232452.BAIB02000007_gene1611	68.6	0.000000000000116	N/A	N/A
structural_annotation	UHGV-0117907_51	PF19714	N/A	N/A	N/A	N/A
PHROG	UHGV-0117907_53	phrog_959	72.8	2e-21	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0117907_53	UniRef90_UPI001AAAF7A6	177.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0117907_53	881953.E0YIX5_9CAUD	61.2	0.00000000695	HNH endonuclease	N/A
PADLOC	UHGV-0117907_53	HEase_00016	52.8	0.00000000000001	homing endonuclease	RM
Pfam	UHGV-0117907_53	PF13392	N/A	N/A	HNH endonuclease	HNH_3
Pfam	UHGV-0117907_53	PF07453	N/A	N/A	NUMOD1 domain	NUMOD1
structural_annotation	UHGV-0117907_53	PF13392,TIGR01453	N/A	N/A	N/A	N/A
KOfam	UHGV-0117907_54	K06909	302.4	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0117907_54	phrog_3717	112.9	7.2e-38	terminase large subunit	head and packaging
UniRef90	UHGV-0117907_54	UniRef90_A0A349YI29	504.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0117907_54	536232.CLM_2529	432.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0117907_54	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0117907_54	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0117907_54	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0117907_54	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0117907_54	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0117907_58	phrog_30343	194.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0117907_58	397291.C804_00939	180.0	0	N/A	N/A
structural_annotation	UHGV-0117907_58	PF11039,MF_02210,TIGR03585,COG1670	N/A	N/A	N/A	N/A
PHROG	UHGV-0117907_62	phrog_842	217.8	0	beta-glucosyl-HMC-alpha-glucosyltransferase	other
UniRef90	UHGV-0117907_62	UniRef90_A0A516LJ12	299.0	0	Putative beta-glucosyl-HMC-alpha-glucosyl-transferase	N/A
eggNOG-mapper	UHGV-0117907_62	508419.F8J156_9CAUD	217.0	0	N/A	N/A
Pfam	UHGV-0117907_62	PF20691	N/A	N/A	TET-Associated Glycosyltransferase	TAGT
structural_annotation	UHGV-0117907_62	PF20691,NF041865,COG1216	N/A	N/A	N/A	N/A
KOfam	UHGV-0117907_63	K03497	53.3	0.0000000000000059	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0117907_63	phrog_620	161.0	0	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0117907_63	UniRef90_A0A2P1CCG3	228.0	0	Adenine-specific methyltransferase	N/A
eggNOG-mapper	UHGV-0117907_63	1399942.U3PCR3_9CAUD	227.0	0	helicase activity	N/A
PADLOC	UHGV-0117907_63	MTase_II_00015	88.4	4.2e-26	Type II methyltransferase	RM
Pfam	UHGV-0117907_63	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
structural_annotation	UHGV-0117907_63	PF02195,TIGR00180,COG5119	N/A	N/A	N/A	N/A
PHROG	UHGV-0117907_64	phrog_2245	66.3	4.9e-19	nucleoside triphosphate pyrophosphohydrolase	other
structural_annotation	UHGV-0117907_64	PF02185	N/A	N/A	N/A	N/A
PHROG	UHGV-0117907_65	phrog_26445	48.2	0.00000000000016	N/A	unknown function
UniRef90	UHGV-0117907_65	UniRef90_UPI0018AC840B	61.6	0.00000000137	helix-turn-helix domain containing protein	N/A
eggNOG-mapper	UHGV-0117907_65	97139.C824_00034	54.7	0.000000108	N/A	N/A
PHROG	UHGV-0117907_68	phrog_2412	47.6	0.00000000000027	N/A	unknown function
structural_annotation	UHGV-0117907_71	PF14084	N/A	N/A	N/A	N/A
KOfam	UHGV-0117907_72	K03469	153.1	2.8026e-45	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0117907_72	phrog_531	137.8	5.60001e-41	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0117907_72	UniRef90_R6Z2B0	129.0	1.81e-35	Ribonuclease H	N/A
eggNOG-mapper	UHGV-0117907_72	1291050.JAGE01000002_gene3473	125.0	1.36e-34	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	N/A
Pfam	UHGV-0117907_72	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0117907_72	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0117907_72	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0117907_73	PF10922	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0117907_76	PF21138,NF009630,COG2375	N/A	N/A	N/A	N/A
PHROG	UHGV-0117907_77	phrog_2002	58.9	9.1e-17	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
structural_annotation	UHGV-0117907_77	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0117907_79	742727.HMPREF9447_04886	50.4	0.00000827	N/A	N/A
structural_annotation	UHGV-0117907_79	PF18275	N/A	N/A	N/A	N/A
PHROG	UHGV-0117907_80	phrog_6466	68.1	1.2e-19	DNA ligase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0117907_80	UniRef90_A0A843GQD5	89.0	8.49e-21	DNA_ligase_aden domain-containing protein	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0117907	Yes	49,308	32	100	1
UHGV-1390323	No	49,213	32	97	1