vOTU vOTU-046043

vOTU: vOTU-046043

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-046043
Number of genomes	5
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00060 → vGENUS-00089 → vSUBGEN-33874 → vOTU-046043
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-170 → CAG-170 sp000432135
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0140742
Biosample ID	N/A
Genome length (bp)	41,042 bps
CheckV completeness	100.00% (Complete)
CDS count	50
CDS density	93.78%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-170 → CAG-170 sp000432135	Total connections	150	Host agreement	84
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-170	Total connections	24	Host agreement	95.83

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0140742_1	phrog_190	85.2	8.8e-25	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0140742_1	UniRef90_A0A4D7AZG9	94.0	3.26e-22	N/A	N/A
eggNOG-mapper	UHGV-0140742_1	693746.OBV_25250	94.0	1.77e-22	N/A	N/A
Pfam	UHGV-0140742_1	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0140742_1	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-0140742_4	phrog_38832	59.8	2.9e-17	N/A	unknown function
eggNOG-mapper	UHGV-0140742_4	1232443.BAIA02000078_gene48	118.0	2.85e-33	N/A	N/A
PHROG	UHGV-0140742_6	phrog_38832	99.8	2.5e-29	N/A	unknown function
eggNOG-mapper	UHGV-0140742_6	665956.HMPREF1032_00143	97.4	3.31e-23	N/A	N/A
PHROG	UHGV-0140742_7	phrog_3136	133.1	1e-39	N/A	unknown function
UniRef90	UHGV-0140742_7	UniRef90_A0A3D0HBD2	116.0	2.82e-30	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0140742_7	1235793.C809_02645	71.6	0.000000000000629	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
Pfam	UHGV-0140742_7	PF04266	N/A	N/A	ASCH domain	ASCH
COG	UHGV-0140742_7	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0140742_7	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0140742_8	phrog_424	98.3	9e-29	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0140742_8	UniRef90_A0A1Q6JI14	358.0	0	Phosphoadenosine phosphosulfate reductase	N/A
eggNOG-mapper	UHGV-0140742_8	1410628.JNKS01000054_gene544	305.0	0	N/A	N/A
Pfam	UHGV-0140742_8	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0140742_8	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0140742_8	PF01507,MF_01161,NF006327,COG0175	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0140742_12	NF041247	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0140742_14	PF10548	N/A	N/A	N/A	N/A
KOfam	UHGV-0140742_17	K22300	58.5	1.5e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0140742_17	phrog_8	48.9	0.00000000000014	transcriptional regulator	transcription regulation
UniRef90	UHGV-0140742_17	UniRef90_A0A844DFR0	120.0	1.35e-32	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0140742_17	748224.HMPREF9436_01444	115.0	4.12e-31	N/A	N/A
Pfam	UHGV-0140742_17	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0140742_17	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0140742_17	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0140742_18	857571.EA1_08492	58.9	0.000000137	N/A	N/A
Pfam	UHGV-0140742_20	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0140742_20	PF12844,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0140742_21	K14059	206.6	0	int; integrase	N/A
PHROG	UHGV-0140742_21	phrog_1	198.1	0	integrase	integration and excision
UniRef90	UHGV-0140742_21	UniRef90_A0A212JT52	253.0	0	Putative Integrase family protein	N/A
eggNOG-mapper	UHGV-0140742_21	1507.HMPREF0262_00307	199.0	0	Phage integrase family	N/A
Pfam	UHGV-0140742_21	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0140742_21	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0140742_21	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0140742_21	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0140742_22	UniRef90_A0A8F0WD75	75.5	0.0000000000000591	RNA polymerase sigma factor/Ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0140742_22	1378168.N510_03079	67.4	0.0000000000278	N/A	N/A
structural_annotation	UHGV-0140742_23	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0140742_24	phrog_16490	53.9	0.0000000000000041	N/A	unknown function
PHROG	UHGV-0140742_27	phrog_14030	140.9	8.2004e-42	N/A	unknown function
UniRef90	UHGV-0140742_27	UniRef90_R6LL81	242.0	0	SLH domain-containing protein	N/A
eggNOG-mapper	UHGV-0140742_27	1121866.AUGK01000003_gene1444	95.9	5.76e-20	amidase activity	N/A
COG	UHGV-0140742_27	COG1705	N/A	N/A	Flagellum-specific peptidoglycan hydrolase FlgJ	N/A
PHROG	UHGV-0140742_28	phrog_6918	95.6	3.4e-28	holin	lysis
UniRef90	UHGV-0140742_28	UniRef90_A0A316QCY7	103.0	1.73e-26	Holin	N/A
eggNOG-mapper	UHGV-0140742_28	1297617.JPJD01000020_gene301	101.0	1.21e-26	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-0140742_28	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
structural_annotation	UHGV-0140742_28	PF09682,TIGR01673	N/A	N/A	N/A	N/A
PHROG	UHGV-0140742_32	phrog_37900	48.1	0.0000000000000023	N/A	unknown function
UniRef90	UHGV-0140742_32	UniRef90_R5IRZ6	275.0	0	N/A	N/A
eggNOG-mapper	UHGV-0140742_32	1519439.JPJG01000060_gene1894	178.0	0	N/A	N/A
Pfam	UHGV-0140742_32	PF19789	N/A	N/A	N/A	DUF6273
COG	UHGV-0140742_32	COG3827	N/A	N/A	Cell pole-organizing protein PopZ	N/A
structural_annotation	UHGV-0140742_32	PF19789	N/A	N/A	N/A	N/A
KOfam	UHGV-0140742_33	K16628	175.5	0	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-0140742_33	phrog_819	134.7	0	tail protein	tail
eggNOG-mapper	UHGV-0140742_33	1232443.BAIA02000078_gene14	84.0	0.000000000000067	nuclear chromosome segregation	N/A
Pfam	UHGV-0140742_33	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0140742_33	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0140742_34	PF18962,NF011773	N/A	N/A	N/A	N/A
PHROG	UHGV-0140742_35	phrog_33872	55.8	9.3e-16	N/A	unknown function
eggNOG-mapper	UHGV-0140742_35	693746.OBV_19740	60.5	0.0000000000977	N/A	N/A
PHROG	UHGV-0140742_36	phrog_22978	126.8	7.8e-38	N/A	unknown function
eggNOG-mapper	UHGV-0140742_36	1232449.BAHV02000016_gene1805	417.0	0	N/A	N/A
Pfam	UHGV-0140742_36	PF18819	N/A	N/A	Phage MuF-C-terminal domain	MuF_C
Pfam	UHGV-0140742_36	PF18760	N/A	N/A	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
UniRef90	UHGV-0140742_37	UniRef90_R5DCX9	189.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0140742_37	1410650.JHWL01000003_gene2815	137.0	7.19e-34	N/A	N/A
PHROG	UHGV-0140742_38	phrog_12105	125.8	2.1e-37	N/A	unknown function
eggNOG-mapper	UHGV-0140742_38	1226322.HMPREF1545_03850	63.5	0.0000000000366	N/A	N/A
PHROG	UHGV-0140742_40	phrog_1357	217.3	0	major head protein	head and packaging
UniRef90	UHGV-0140742_40	UniRef90_A0A2V2CFL5	398.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0140742_40	1410650.JHWL01000003_gene2830	274.0	0	N/A	N/A
Pfam	UHGV-0140742_40	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0140742_40	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0140742_40	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0140742_41	phrog_13908	148.2	5.1848e-44	N/A	unknown function
eggNOG-mapper	UHGV-0140742_41	1410650.JHWL01000003_gene2831	105.0	9.67e-24	N/A	N/A
PHROG	UHGV-0140742_42	phrog_156	289.8	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0140742_42	1410650.JHWL01000003_gene2833	538.0	0	N/A	N/A
structural_annotation	UHGV-0140742_42	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0140742_44	phrog_37329	46.9	0.00000000000031	N/A	unknown function
Pfam	UHGV-0140742_44	PF00041	N/A	N/A	Fibronectin type III domain	fn3
COG	UHGV-0140742_44	COG4733	N/A	N/A	Phage-related protein, tail protein J	N/A
structural_annotation	UHGV-0140742_44	PF17744,PF16655,MF_01905,NF038116,COG3979,COG2033	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0140742_45	537007.BLAHAN_05255	59.3	0.00000131	N/A	N/A
PHROG	UHGV-0140742_46	phrog_511	236.8	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0140742_46	1410650.JHWL01000003_gene2827	325.0	0	N/A	N/A
structural_annotation	UHGV-0140742_46	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
KOfam	UHGV-0140742_47	K06909	151.4	7.00649e-45	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0140742_47	phrog_979	137.9	3.80032e-42	terminase large subunit	head and packaging
UniRef90	UHGV-0140742_47	UniRef90_A0A810Q5R0	647.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0140742_47	1410650.JHWL01000003_gene2834	613.0	0	N/A	N/A
Pfam	UHGV-0140742_47	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0140742_47	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0140742_47	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0140742_48	phrog_606	65.9	7e-19	terminase small subunit	head and packaging
UniRef90	UHGV-0140742_48	UniRef90_UPI001F487344	124.0	1.12e-33	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0140742_48	397290.C810_05185	122.0	1.83e-33	DNA-packaging protein gp3	N/A
Pfam	UHGV-0140742_48	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0140742_48	PF16677	N/A	N/A	N/A	N/A
PHROG	UHGV-0140742_49	phrog_3584	114.3	1e-33	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0140742_49	537013.CLOSTMETH_02141	70.5	0.0000000000047	N/A	N/A
structural_annotation	UHGV-0140742_49	PF21578,MF_00360	N/A	N/A	N/A	N/A
PHROG	UHGV-0140742_50	phrog_374	59.5	7.5e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0140742_50	1423807.BACO01000037_gene1103	69.3	0.000000000000597	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0140742	Yes	41,042	59	100	1
UHGV-1382899	No	41,153	59	98	1
UHGV-0197860	No	41,041	59	98	1
UHGV-1477302	No	31,945	60	76	1
UHGV-1424504	No	21,840	60	52	1