vOTU vOTU-046071

vOTU: vOTU-046071

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-046071
Number of genomes	3
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83 → CAG-83 sp900551995
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00200 → vGENUS-01453 → vSUBGEN-26053 → vOTU-046071
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0143857
Biosample ID	N/A
Genome length (bp)	35,529 bps
CheckV completeness	100.00% (Complete)
CDS count	56
CDS density	92.27%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83	Total connections	154	Host agreement	96.1
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83 → CAG-83 sp900551995	Total connections	3	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0143857_1	phrog_24451	49.8	0.000000000000065	N/A	unknown function
eggNOG-mapper	UHGV-0143857_1	1408437.JNJN01000040_gene189	133.0	1.71e-38	N/A	N/A
PHROG	UHGV-0143857_3	phrog_4105	101.5	4.6e-30	N/A	unknown function
UniRef90	UHGV-0143857_3	UniRef90_A0A8D9UHA9	172.0	0	Holin protein	N/A
eggNOG-mapper	UHGV-0143857_3	411460.RUMTOR_01326	130.0	3.04e-38	N/A	N/A
PHROG	UHGV-0143857_4	phrog_1129	69.0	5.2e-20	holin	lysis
UniRef90	UHGV-0143857_4	UniRef90_A0A1Q6RI18	122.0	2.59e-34	Enolase	N/A
eggNOG-mapper	UHGV-0143857_4	1226322.HMPREF1545_00069	129.0	8.58e-38	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0143857_4	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0143857_4	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0143857_5	phrog_435	57.6	2.6e-16	endolysin	lysis
UniRef90	UHGV-0143857_5	UniRef90_A0A8D9PDS4	374.0	0	Cell wall hydrolase/autolysin	N/A
eggNOG-mapper	UHGV-0143857_5	1226322.HMPREF1545_01953	90.5	5.53e-19	N-acetylmuramoyl-L-alanine amidase	N/A
COG	UHGV-0143857_5	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0143857_5	PF01520,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A
PHROG	UHGV-0143857_7	phrog_25567	58.3	1.1e-16	N/A	unknown function
UniRef90	UHGV-0143857_7	UniRef90_UPI00164AED9E	116.0	2.11e-31	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0143857_7	1235798.C817_04600	96.3	3.77e-24	N/A	N/A
Pfam	UHGV-0143857_7	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0143857_7	NF040522,COG2944	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0143857_8	742738.HMPREF9460_04058	105.0	3.96e-25	N/A	N/A
KOfam	UHGV-0143857_9	K14059	148.3	8.96831e-44	int; integrase	N/A
PHROG	UHGV-0143857_9	phrog_1	148.5	5.46506e-44	integrase	integration and excision
UniRef90	UHGV-0143857_9	UniRef90_UPI001EDEB0AD	293.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0143857_9	1226322.HMPREF1545_00144	241.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0143857_9	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0143857_9	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0143857_9	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0143857_10	TIGR04165,COG3478	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0143857_12	1226325.HMPREF1548_05412	57.4	0.000000336	Peptidoglycan-binding domain 1 protein	N/A
COG	UHGV-0143857_12	COG2333	N/A	N/A	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	N/A
UniRef90	UHGV-0143857_13	UniRef90_A0A1Y3ZTC9	110.0	2.68e-29	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0143857_13	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0143857_13	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0143857_13	PF13443,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0143857_17	PF14947,NF041230,COG3432	N/A	N/A	N/A	N/A
PHROG	UHGV-0143857_18	phrog_8	42.5	0.000000000014	transcriptional regulator	transcription regulation
UniRef90	UHGV-0143857_18	UniRef90_A0A1C5PF11	102.0	6.5e-27	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0143857_18	1226322.HMPREF1545_02466	102.0	1.09e-27	Cro/C1-type HTH DNA-binding domain	N/A
structural_annotation	UHGV-0143857_18	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0143857_19	K22300	58.7	1.5e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0143857_19	phrog_3	50.4	0.0000000000001	transcriptional repressor	transcription regulation
UniRef90	UHGV-0143857_19	UniRef90_UPI000F0D19B9	66.2	0.00000000000057	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0143857_19	445975.COLSTE_01137	51.2	0.000000799	Peptidase S24-like	N/A
Pfam	UHGV-0143857_19	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0143857_19	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0143857_19	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0143857_21	phrog_6499	121.4	3.9e-36	transcriptional regulator	transcription regulation
UniRef90	UHGV-0143857_21	UniRef90_G9YL68	141.0	5.09001e-40	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0143857_21	742738.HMPREF9460_00847	141.0	5.96e-41	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0143857_21	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0143857_21	COG1813	N/A	N/A	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	N/A
structural_annotation	UHGV-0143857_21	PF01381,MF_00535,NF040522,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0143857_23	phrog_270	93.2	4e-27	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0143857_23	UniRef90_UPI00195D2180	144.0	6.03e-38	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0143857_23	742738.HMPREF9460_00851	146.0	7.92e-40	Helix-turn-helix domain	N/A
Pfam	UHGV-0143857_23	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0143857_23	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0143857_23	PF04182,NF040939,COG3355	N/A	N/A	N/A	N/A
KOfam	UHGV-0143857_24	K02314	261.7	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0143857_24	phrog_19	227.4	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0143857_24	UniRef90_A0A1Y3RP11	298.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-0143857_24	1226322.HMPREF1545_00095	295.0	0	DnaB-like helicase N terminal domain	N/A
Pfam	UHGV-0143857_24	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0143857_24	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0143857_24	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0143857_24	PF03796,PF00772,MF_04155,NF005240,COG0305	N/A	N/A	N/A	N/A
KOfam	UHGV-0143857_25	K03496	171.0	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0143857_25	phrog_164	131.8	5.5e-39	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0143857_25	UniRef90_UPI000318E277	265.0	0	ParA family protein	N/A
eggNOG-mapper	UHGV-0143857_25	1007096.BAGW01000033_gene1614	256.0	0	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	N/A
Pfam	UHGV-0143857_25	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0143857_25	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0143857_25	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
KOfam	UHGV-0143857_26	K03497	78.4	1.5e-22	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0143857_26	phrog_27290	353.6	0	N/A	unknown function
UniRef90	UHGV-0143857_26	UniRef90_UPI0003130F10	302.0	0	ParB N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0143857_26	1007096.BAGW01000033_gene1613	302.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0143857_26	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0143857_26	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0143857_26	PF12961,PF02195,MF_02015,MF_00684,TIGR04285,NF003443,COG1475,COG3097	N/A	N/A	N/A	N/A
PHROG	UHGV-0143857_35	phrog_3584	75.8	5.9e-22	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0143857_35	693746.OBV_19950	249.0	0	N/A	N/A
structural_annotation	UHGV-0143857_35	PF21578	N/A	N/A	N/A	N/A
UniRef90	UHGV-0143857_36	UniRef90_UPI001F232519	75.1	1.93e-16	cysteine-rich KTR domain-containing protein	N/A
eggNOG-mapper	UHGV-0143857_36	1226322.HMPREF1545_00110	68.9	0.00000000000000866	Cysteine-rich KTR	N/A
Pfam	UHGV-0143857_36	PF14205	N/A	N/A	Cysteine-rich KTR	Cys_rich_KTR
structural_annotation	UHGV-0143857_36	PF14205	N/A	N/A	N/A	N/A
PHROG	UHGV-0143857_37	phrog_119	71.0	1.6e-20	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0143857_37	UniRef90_G9YSB5	150.0	9.80909e-45	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-0143857_37	1235792.C808_00081	83.2	3.98e-19	HNH nucleases	N/A
Pfam	UHGV-0143857_37	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0143857_37	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
KOfam	UHGV-0143857_38	K03497	48.0	0.00000000000025	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0143857_38	phrog_620	135.2	6.89999e-41	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0143857_38	UniRef90_A0A810PZK9	202.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0143857_38	173707.Q938L7_9CAUD	114.0	3.26e-30	helicase activity	N/A
PADLOC	UHGV-0143857_38	MTase_II_00015	90.5	3.2e-26	Type II methyltransferase	RM
Pfam	UHGV-0143857_38	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
structural_annotation	UHGV-0143857_38	PF02195,MF_02015,TIGR04285,COG1475	N/A	N/A	N/A	N/A
UniRef90	UHGV-0143857_39	UniRef90_A0A1V6DKY6	72.0	0.00000000052	Radical SAM superfamily protein	N/A
eggNOG-mapper	UHGV-0143857_39	397288.C806_02405	59.7	0.00000118	Elongator protein 3, MiaB family, Radical SAM	N/A
COG	UHGV-0143857_39	COG1032	N/A	N/A	Radical SAM superfamily enzyme YgiQ, UPF0313 family	N/A
structural_annotation	UHGV-0143857_39	PF02310,MF_01864,TIGR03960,COG1032	N/A	N/A	N/A	N/A
PHROG	UHGV-0143857_40	phrog_5110	61.7	7.5e-18	terminase small subunit	head and packaging
UniRef90	UHGV-0143857_40	UniRef90_UPI00195E8788	124.0	3.32e-33	P27 family phage terminase small subunit	N/A
Pfam	UHGV-0143857_40	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0143857_40	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0143857_41	phrog_9	246.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-0143857_41	UniRef90_UPI0018737C02	905.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0143857_41	1235792.C808_00083	596.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0143857_41	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0143857_41	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0143857_41	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0143857_41	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0143857_42	phrog_12	119.6	9.8e-36	portal protein	head and packaging
UniRef90	UHGV-0143857_42	UniRef90_UPI0018755FA4	510.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0143857_42	610130.Closa_0742	289.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0143857_42	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0143857_42	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0143857_42	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0143857_42	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0143857_43	K01358	130.2	2.2e-38	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0143857_43	phrog_94	249.1	0	head maturation protease	head and packaging
UniRef90	UHGV-0143857_43	UniRef90_A0A1Y4BT12	353.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0143857_43	349161.Dred_2605	305.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0143857_43	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0143857_43	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0143857_43	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0143857_44	phrog_10	138.6	7.00005e-41	major head protein	head and packaging
UniRef90	UHGV-0143857_44	UniRef90_G9YSC0	687.0	0	Cadherin-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0143857_44	1235792.C808_00086	420.0	0	Phage capsid family	N/A
Pfam	UHGV-0143857_44	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0143857_44	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0143857_44	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0143857_44	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0143857_44	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0143857_45	phrog_749	67.6	1.7e-19	N/A	unknown function
UniRef90	UHGV-0143857_45	UniRef90_UPI001C0FB8A8	53.9	0.000000246	head-tail connector protein	N/A
eggNOG-mapper	UHGV-0143857_45	349161.Dred_2603	79.7	3.86e-18	N/A	N/A
PHROG	UHGV-0143857_46	phrog_19734	115.8	2.8e-34	N/A	unknown function
UniRef90	UHGV-0143857_46	UniRef90_A0A6I7GNS7	124.0	4.75e-34	Phage head closure protein	N/A
eggNOG-mapper	UHGV-0143857_46	1235798.C817_04587	62.4	0.0000000000811	N/A	N/A
structural_annotation	UHGV-0143857_46	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0143857_47	999413.HMPREF1094_02005	82.8	5.57e-19	N/A	N/A
structural_annotation	UHGV-0143857_47	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0143857_48	phrog_5	43.6	0.0000000000056	tail completion or Neck1 protein	connector
UniRef90	UHGV-0143857_48	UniRef90_R6UNR2	129.0	4.61e-35	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0143857_48	908340.HMPREF9406_2573	129.0	7.73e-36	N/A	N/A
structural_annotation	UHGV-0143857_48	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0143857_49	phrog_88	97.8	1.2e-28	major tail protein	tail
UniRef90	UHGV-0143857_49	UniRef90_A0A1C6CIL7	133.0	1.51e-34	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0143857_49	33035.JPJF01000039_gene278	72.4	0.000000000000567	N/A	N/A
NCBIFam	UHGV-0143857_49	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0143857_49	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0143857_52	phrog_6900	234.5	0	tail length tape measure protein	tail
UniRef90	UHGV-0143857_52	UniRef90_A0A1E3BXP9	290.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0143857_52	1216932.CM240_0625	293.0	0	tape measure	N/A
COG	UHGV-0143857_52	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0143857_52	PF05537,MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-0143857_53	phrog_33	79.2	9.1e-23	distal tail protein Dit	tail
UniRef90	UHGV-0143857_53	UniRef90_A0A2X2UUQ3	164.0	0	Phage putative tail component	N/A
eggNOG-mapper	UHGV-0143857_53	994573.T472_0211980	99.4	1.35e-22	tail component	N/A
COG	UHGV-0143857_53	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0143857_53	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0143857_54	phrog_1067	293.0	0	minor head protein	head and packaging
UniRef90	UHGV-0143857_54	UniRef90_A0A316NPB5	498.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0143857_54	1123263.AUKY01000068_gene489	352.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0143857_54	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0143857_54	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0143857_54	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0143857_54	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0143857_55	PF17642	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0143857_56	1408437.JNJN01000030_gene1051	66.2	0.00000000522	cellulose 1,4-beta-cellobiosidase activity	N/A
COG	UHGV-0143857_56	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
structural_annotation	UHGV-0143857_56	PF10651,PF04862,TIGR04362,COG5513	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0143857	Yes	35,529	60	100	1
UHGV-1536436	No	20,435	61	60	1
UHGV-0150338	No	17,838	61	52	1