vOTU vOTU-046213

vOTU: vOTU-046213

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-046213
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00707 → vGENUS-01662 → vSUBGEN-03031 → vOTU-046213
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1374052
Biosample ID	SAMN06115521
Genome length (bp)	44,307 bps
CheckV completeness	100.00% (Complete)
CDS count	60
CDS density	94.31%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83	Total connections	57	Host agreement	89.47
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1374052_2	phrog_16490	51.3	0.000000000000025	N/A	unknown function
eggNOG-mapper	UHGV-1374052_2	641112.ACOK01000103_gene525	110.0	1.69e-27	N/A	N/A
structural_annotation	UHGV-1374052_3	PF18573,NF033147	N/A	N/A	N/A	N/A
UniRef90	UHGV-1374052_4	UniRef90_A0A8F0WD75	73.2	0.000000000000472	RNA polymerase sigma factor/Ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-1374052_4	1408437.JNJN01000043_gene801	72.8	0.000000000000119	N/A	N/A
KOfam	UHGV-1374052_5	K06400	293.1	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1374052_5	phrog_95	298.7	0	integrase	integration and excision
UniRef90	UHGV-1374052_5	UniRef90_A0A3A9I9T1	342.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-1374052_5	903814.ELI_4654	284.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1374052_5	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1374052_5	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-1374052_5	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1374052_5	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1374052_5	PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-1374052_6	UniRef90_A0A8D9UHA6	84.3	1.29e-17	Helix-turn-helix XRE-family like protein	N/A
Pfam	UHGV-1374052_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1374052_6	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1374052_6	PF01381,MF_02017,TIGR03070,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-1374052_10	K00390	105.7	2.5e-32	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-1374052_10	phrog_424	127.9	6e-38	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1374052_10	UniRef90_UPI001C034617	274.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-1374052_10	1232452.BAIB02000007_gene1640	255.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-1374052_10	BrxP_00001	45.6	1.2e-24	BrxP	BREX
Pfam	UHGV-1374052_10	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1374052_10	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1374052_10	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
KOfam	UHGV-1374052_11	K00558	140.7	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1374052_11	phrog_116	178.7	0	DNA methyltransferase	other
UniRef90	UHGV-1374052_11	UniRef90_A0A0F0CBC0	356.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1374052_11	871963.Desdi_1341	352.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-1374052_11	oMTase_00004	172.9	0	orphan methyltransferase	RM
Pfam	UHGV-1374052_11	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1374052_11	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-1374052_14	phrog_954	188.2	0	DNA methyltransferase	other
UniRef90	UHGV-1374052_14	UniRef90_A0A8G0W4U8	283.0	0	Class I SAM-dependent methyltransferase	N/A
eggNOG-mapper	UHGV-1374052_14	411461.DORFOR_01143	289.0	0	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	N/A
PADLOC	UHGV-1374052_14	MTase_II_00074	190.0	0	Type II methyltransferase	RM
Pfam	UHGV-1374052_14	PF08241	N/A	N/A	Methyltransferase domain	Methyltransf_11
COG	UHGV-1374052_14	COG1092	N/A	N/A	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	N/A
structural_annotation	UHGV-1374052_14	PF05148,MF_03044,NF033398,COG1041	N/A	N/A	N/A	N/A
KOfam	UHGV-1374052_18	K24451	135.1	4.3e-40	zim; modification methylase	N/A
PHROG	UHGV-1374052_18	phrog_67	108.2	6.7e-32	DNA methyltransferase	other
UniRef90	UHGV-1374052_18	UniRef90_A0A845MWG4	532.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-1374052_18	1120971.AUCA01000053_gene371	401.0	0	DNA methylase	N/A
PADLOC	UHGV-1374052_18	MTase_II_00139	110.8	1.9e-32	Type II methyltransferase	RM
Pfam	UHGV-1374052_18	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1374052_18	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1374052_18	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
KOfam	UHGV-1374052_19	K14440	59.6	5.6e-27	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	N/A
PHROG	UHGV-1374052_19	phrog_62	201.1	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1374052_19	UniRef90_A0A845MVG4	626.0	0	Helicase	N/A
eggNOG-mapper	UHGV-1374052_19	592028.GCWU000321_01359	522.0	0	DEAD-like helicases superfamily	N/A
Pfam	UHGV-1374052_19	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-1374052_19	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-1374052_19	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-1374052_19	PF06862,MF_01821,NF003426,COG0553	N/A	N/A	N/A	N/A
KOfam	UHGV-1374052_21	K01160	45.2	0.0000000000024	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1374052_21	phrog_4632	55.7	2.8e-17	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1374052_21	UniRef90_A0A7X8IB41	115.0	6.88e-31	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1374052_21	469604.HMPREF0946_00819	53.9	0.000000144	N/A	N/A
structural_annotation	UHGV-1374052_21	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1374052_22	1410650.JHWL01000003_gene2848	56.2	0.000000782	N/A	N/A
structural_annotation	UHGV-1374052_22	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-1374052_23	K03111	141.0	1.29998e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1374052_23	phrog_44	135.4	3.8e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1374052_23	UniRef90_A0A810QFR8	157.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1374052_23	1007096.BAGW01000023_gene151	154.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-1374052_23	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1374052_23	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1374052_23	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1374052_23	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1374052_23	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1374052_26	phrog_72	47.1	0.00000000000021	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1374052_26	UniRef90_A0A8D9PDS2	238.0	0	NinB protein	N/A
eggNOG-mapper	UHGV-1374052_26	445972.ANACOL_01825	123.0	2.75e-33	N/A	N/A
structural_annotation	UHGV-1374052_26	PF05772	N/A	N/A	N/A	N/A
UniRef90	UHGV-1374052_27	UniRef90_B0PAM4	136.0	3.39e-37	YqaJ domain-containing protein	N/A
structural_annotation	UHGV-1374052_27	PF09588,TIGR04328,COG5377	N/A	N/A	N/A	N/A
UniRef90	UHGV-1374052_28	UniRef90_A0A845QLQ8	189.0	0	N/A	N/A
eggNOG-mapper	UHGV-1374052_28	33035.JPJF01000135_gene5082	119.0	1.31e-30	N/A	N/A
Pfam	UHGV-1374052_28	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-1374052_28	PF06378,TIGR00607,COG5055	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1374052_31	PF13384	N/A	N/A	N/A	N/A
KOfam	UHGV-1374052_37	K22300	61.2	2.4e-17	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1374052_37	phrog_2967	45.4	0.0000000000011	transcriptional regulator	transcription regulation
UniRef90	UHGV-1374052_37	UniRef90_A0A810Q5N3	136.0	4.76e-39	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1374052_37	1235797.C816_03553	111.0	2.35e-29	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-1374052_37	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1374052_37	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1374052_37	PF01381,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-1374052_39	UniRef90_A0A4Q3LWZ5	47.4	0.00000544	Toxin-antitoxin system HicB family antitoxin	N/A
Pfam	UHGV-1374052_39	PF01402	N/A	N/A	Ribbon-helix-helix protein, copG family	RHH_1
UniRef90	UHGV-1374052_40	UniRef90_UPI0013C3FC23	51.6	0.000000302	chromate transporter	N/A
eggNOG-mapper	UHGV-1374052_40	1304866.K413DRAFT_4686	74.3	5.8e-17	N/A	N/A
UniRef90	UHGV-1374052_41	UniRef90_UPI00141260EC	126.0	2.53e-34	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1374052_41	1226322.HMPREF1545_00042	108.0	4.38e-28	N/A	N/A
KOfam	UHGV-1374052_42	K06909	142.6	3.59994e-42	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1374052_42	phrog_979	137.9	2.29953e-42	terminase large subunit	head and packaging
UniRef90	UHGV-1374052_42	UniRef90_A0A2V2GR60	646.0	0	Terminase-like family protein	N/A
eggNOG-mapper	UHGV-1374052_42	1410650.JHWL01000003_gene2834	613.0	0	N/A	N/A
Pfam	UHGV-1374052_42	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1374052_42	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1374052_42	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1374052_43	phrog_156	336.3	0	portal protein	head and packaging
eggNOG-mapper	UHGV-1374052_43	1410650.JHWL01000003_gene2833	610.0	0	N/A	N/A
structural_annotation	UHGV-1374052_43	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-1374052_44	K07584	48.5	0.00000000000016	N/A	N/A
PHROG	UHGV-1374052_44	phrog_4478	44.1	0.0000000000025	peptidase	other
UniRef90	UHGV-1374052_44	UniRef90_A0A6N9P4C8	52.0	0.00000258	Ribosomal-processing cysteine protease Prp	N/A
Pfam	UHGV-1374052_44	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-1374052_44	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1374052_44	PF04327,NF011133,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-1374052_45	phrog_13908	253.8	0	N/A	unknown function
UniRef90	UHGV-1374052_45	UniRef90_UPI0012DFC3C8	120.0	2.3e-27	ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-1374052_45	1410650.JHWL01000003_gene2831	111.0	9.22e-26	N/A	N/A
PHROG	UHGV-1374052_46	phrog_1357	274.4	0	major head protein	head and packaging
UniRef90	UHGV-1374052_46	UniRef90_A0A2V2GQW4	376.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-1374052_46	748224.HMPREF9436_01399	352.0	0	N/A	N/A
Pfam	UHGV-1374052_46	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-1374052_46	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-1374052_46	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1374052_47	phrog_15239	49.1	0.000000000000086	N/A	unknown function
PHROG	UHGV-1374052_48	phrog_12105	117.7	5.9e-35	N/A	unknown function
eggNOG-mapper	UHGV-1374052_48	1519439.JPJG01000060_gene1891	83.2	7.21e-19	N/A	N/A
PHROG	UHGV-1374052_49	phrog_511	221.0	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-1374052_49	1410650.JHWL01000003_gene2827	356.0	0	N/A	N/A
structural_annotation	UHGV-1374052_49	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1374052_50	NF038340	N/A	N/A	N/A	N/A
PHROG	UHGV-1374052_51	phrog_372	280.8	0	tail protein	tail
UniRef90	UHGV-1374052_51	UniRef90_A0A3N0HXV0	224.0	0	Pilus assembly protein	N/A
eggNOG-mapper	UHGV-1374052_51	1235802.C823_05263	194.0	0	N/A	N/A
Pfam	UHGV-1374052_51	PF05895	N/A	N/A	N/A	DUF859
COG	UHGV-1374052_51	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-1374052_51	PF05895,MF_04116,NF010681,COG3291	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1374052_52	PF10651,TIGR04339	N/A	N/A	N/A	N/A
PHROG	UHGV-1374052_53	phrog_30034	111.7	8.4e-33	N/A	unknown function
UniRef90	UHGV-1374052_53	UniRef90_A0A3D1XGA4	223.0	0	Chitin-binding type-3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1374052_53	1122971.BAME01000151_gene6566	105.0	7.36e-26	N/A	N/A
Pfam	UHGV-1374052_53	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
PHROG	UHGV-1374052_54	phrog_1863	67.8	9.7e-20	N/A	unknown function
eggNOG-mapper	UHGV-1374052_54	748224.HMPREF9436_01412	98.2	3.71e-26	N/A	N/A
PHROG	UHGV-1374052_55	phrog_1129	64.8	9.5e-19	holin	lysis
UniRef90	UHGV-1374052_55	UniRef90_R5D220	110.0	1.33e-29	Putative holin	N/A
eggNOG-mapper	UHGV-1374052_55	1007096.BAGW01000032_gene1582	105.0	1.5e-28	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-1374052_55	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1374052_55	PF06946	N/A	N/A	N/A	N/A
KOfam	UHGV-1374052_56	K01447	88.2	1.3e-25	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1374052_56	phrog_1493	160.5	0	endolysin	lysis
UniRef90	UHGV-1374052_56	UniRef90_A0A350TLR9	214.0	0	Peptidoglycan-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-1374052_56	1504823.CCMM01000008_gene1019	175.0	0	Ami_2	N/A
Pfam	UHGV-1374052_56	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-1374052_56	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-1374052_56	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-1374052_56	PF01510,PF01471,MF_04111,NF008758,COG3023	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1374052_57	1410650.JHWL01000003_gene2815	157.0	2.07995e-41	N/A	N/A
PHROG	UHGV-1374052_58	phrog_22978	789.0	0	N/A	unknown function
UniRef90	UHGV-1374052_58	UniRef90_A0A1Y4WLF7	883.0	0	PBECR5 domain-containing protein	N/A
eggNOG-mapper	UHGV-1374052_58	1410650.JHWL01000003_gene2814	469.0	0	N/A	N/A
Pfam	UHGV-1374052_58	PF18814	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
UniRef90	UHGV-1374052_59	UniRef90_A0A658JVX5	86.3	2.16e-20	Sigma-70 family RNA polymerase sigma factor	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1374052	Yes	44,307	58	100	1
UHGV-0155576	No	44,307	58	100	1
UHGV-0269571	No	11,520	56	27	1