vOTU vOTU-046426

vOTU: vOTU-046426

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-046426
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00001 → vSUBFAM-00143 → vGENUS-00097 → vSUBGEN-00058 → vOTU-046426
Host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemanella
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0171944
Biosample ID	N/A
Genome length (bp)	39,983 bps
CheckV completeness	100.00% (Complete)
CDS count	64
CDS density	94.83%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemanella	Total connections	124	Host agreement	89.52
PHIST-predicted host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemanella → Holdemanella porci	Total connections	21	Host agreement	85.71

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0171944_1	K06909	71.6	1.3e-20	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0171944_1	phrog_2	99.0	9.5e-29	terminase large subunit	head and packaging
UniRef90	UHGV-0171944_1	UniRef90_UPI001D0AA0D4	619.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0171944_1	552396.HMPREF0863_00282	333.0	0	DNA packaging	N/A
Pfam	UHGV-0171944_1	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0171944_1	COG1783	N/A	N/A	Phage terminase large subunit	N/A
PHROG	UHGV-0171944_2	phrog_2412	65.6	8.7e-19	N/A	unknown function
UniRef90	UHGV-0171944_2	UniRef90_UPI000427CABE	59.7	0.0000000257	KGG domain-containing protein	N/A
eggNOG-mapper	UHGV-0171944_2	1232449.BAHV02000018_gene1532	68.9	0.00000000000194	N/A	N/A
KOfam	UHGV-0171944_3	K07319	132.0	6.1e-39	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-0171944_3	phrog_498	451.5	0	DNA methyltransferase	other
UniRef90	UHGV-0171944_3	UniRef90_UPI001D0A8584	882.0	0	DNA modification methylase	N/A
eggNOG-mapper	UHGV-0171944_3	521003.COLINT_02335	433.0	0	DNA methylase	N/A
PADLOC	UHGV-0171944_3	MTase_II_00015	254.6	0	Type II methyltransferase	RM
Pfam	UHGV-0171944_3	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-0171944_3	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0171944_3	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0171944_3	PF01555,PF02195,MF_02015,MF_01872,NF010253,TIGR04285,COG0863,COG1475	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0171944_5	TIGR01637	N/A	N/A	N/A	N/A
KOfam	UHGV-0171944_6	K14440	133.9	1.10001e-40	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	N/A
PHROG	UHGV-0171944_6	phrog_62	393.3	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0171944_6	UniRef90_UPI001E5F6A13	891.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-0171944_6	552396.HMPREF0863_00284	543.0	0	SNF2 family N-terminal domain	N/A
PADLOC	UHGV-0171944_6	ZorD1_00007	99.2	4.5e-29	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
Pfam	UHGV-0171944_6	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-0171944_6	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0171944_6	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-0171944_6	PF13872,PF16203,MF_01821,NF041790,COG0553	N/A	N/A	N/A	N/A
PHROG	UHGV-0171944_7	phrog_93	72.9	4.7e-21	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0171944_7	UniRef90_UPI00189BA373	207.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0171944_7	1122146.AUHP01000010_gene1025	95.1	3.42e-24	VRR_NUC	N/A
structural_annotation	UHGV-0171944_7	PF01870,MF_00130,NF040854,COG1591	N/A	N/A	N/A	N/A
PHROG	UHGV-0171944_9	phrog_2245	75.9	5.6e-22	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-0171944_9	UniRef90_A0A373NRP8	68.2	0.00000000000108	MazG domain-containing protein	N/A
eggNOG-mapper	UHGV-0171944_9	326426.Bbr_0313	58.2	0.000000012	N/A	N/A
structural_annotation	UHGV-0171944_9	PF12643,MF_01020,TIGR03188,COG0140	N/A	N/A	N/A	N/A
PHROG	UHGV-0171944_10	phrog_256	973.2	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0171944_10	UniRef90_UPI001D0A1C03	1482.0	0	virulence-associated E family protein	N/A
eggNOG-mapper	UHGV-0171944_10	552396.HMPREF0863_00286	884.0	0	N/A	N/A
Pfam	UHGV-0171944_10	PF05272	N/A	N/A	Virulence-associated protein E-like domain	VapE-like_dom
COG	UHGV-0171944_10	COG5545	N/A	N/A	Predicted P-loop ATPase and inactivated derivatives	N/A
structural_annotation	UHGV-0171944_10	PF05272,MF_04000,NF005477,NF040562,COG5545	N/A	N/A	N/A	N/A
KOfam	UHGV-0171944_13	K02334	801.9	0	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	N/A
PHROG	UHGV-0171944_13	phrog_17	396.8	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0171944_13	UniRef90_UPI001D0A031A	1349.0	0	DNA polymerase	N/A
eggNOG-mapper	UHGV-0171944_13	552396.HMPREF0863_00289	619.0	0	DNA polymerase	N/A
Pfam	UHGV-0171944_13	PF00476	N/A	N/A	DNA polymerase family A	DNA_pol_A
COG	UHGV-0171944_13	COG0749	N/A	N/A	DNA polymerase I, 3'-5' exonuclease and polymerase domains	N/A
structural_annotation	UHGV-0171944_13	PF00476,MF_04101,NF011540,COG0749	N/A	N/A	N/A	N/A
PHROG	UHGV-0171944_14	phrog_112	129.2	3.2e-38	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0171944_14	UniRef90_UPI0018993946	378.0	0	N/A	N/A
eggNOG-mapper	UHGV-0171944_14	552396.HMPREF0863_00290	149.0	1.02995e-42	N/A	N/A
Pfam	UHGV-0171944_14	PF10991	N/A	N/A	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
structural_annotation	UHGV-0171944_14	PF10991,MF_04153	N/A	N/A	N/A	N/A
PHROG	UHGV-0171944_15	phrog_69	329.7	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0171944_15	UniRef90_UPI001D0AE809	722.0	0	N/A	N/A
eggNOG-mapper	UHGV-0171944_15	1235796.C815_00944	345.0	0	N/A	N/A
Pfam	UHGV-0171944_15	PF10926	N/A	N/A	N/A	DUF2800
COG	UHGV-0171944_15	COG2887	N/A	N/A	RecB family exonuclease	N/A
structural_annotation	UHGV-0171944_15	PF10926,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0171944_20	PF06786	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0171944_21	NF040990	N/A	N/A	N/A	N/A
KOfam	UHGV-0171944_25	K18830	54.8	0.0000000000000025	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0171944_25	phrog_8	44.8	0.0000000000007	transcriptional regulator	transcription regulation
UniRef90	UHGV-0171944_25	UniRef90_UPI00189831EE	142.0	1.70006e-41	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0171944_25	525254.HMPREF0072_0267	82.8	6.38e-19	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-0171944_25	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0171944_25	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0171944_25	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0171944_26	phrog_2967	44.8	0.0000000000019	transcriptional regulator	transcription regulation
UniRef90	UHGV-0171944_26	UniRef90_UPI001D09EDED	375.0	0	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0171944_26	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0171944_26	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0171944_26	PF00717,PF01381,MF_00015,TIGR00498,COG2932	N/A	N/A	N/A	N/A
KOfam	UHGV-0171944_27	K14059	223.3	0	int; integrase	N/A
PHROG	UHGV-0171944_27	phrog_1	210.6	0	integrase	integration and excision
UniRef90	UHGV-0171944_27	UniRef90_UPI00189BAE2B	743.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0171944_27	1095750.HMPREF9970_0588	170.0	0	Arm DNA-binding domain	N/A
Pfam	UHGV-0171944_27	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-0171944_27	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0171944_27	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0171944_27	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0171944_27	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0171944_29	UniRef90_UPI001D0A947F	208.0	0	helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-0171944_29	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0171944_29	PF13443,MF_02017,NF041951,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0171944_31	PF19824,TIGR03090	N/A	N/A	N/A	N/A
PHROG	UHGV-0171944_32	phrog_1863	40.8	0.000000000025	N/A	unknown function
PHROG	UHGV-0171944_33	phrog_443	60.0	7.4e-17	holin	lysis
UniRef90	UHGV-0171944_33	UniRef90_UPI001896A9B9	131.0	1.09e-38	holin	N/A
eggNOG-mapper	UHGV-0171944_33	1125712.HMPREF1316_2355	77.0	6.38e-18	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0171944_33	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0171944_33	PF16945	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0171944_34	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0171944_35	phrog_16490	46.0	0.00000000000014	N/A	unknown function
eggNOG-mapper	UHGV-0171944_35	1235790.C805_00060	64.3	0.00000000108	N/A	N/A
PHROG	UHGV-0171944_36	phrog_22984	52.7	0.0000000000000087	N/A	unknown function
PHROG	UHGV-0171944_37	phrog_21718	54.8	0.0000000000000016	N/A	unknown function
UniRef90	UHGV-0171944_37	UniRef90_A0A8D9PDT7	53.1	0.000000843	Membrane fusogenic activity protein	N/A
eggNOG-mapper	UHGV-0171944_37	476272.RUMHYD_01768	54.3	0.000000166	N/A	N/A
PHROG	UHGV-0171944_39	phrog_11037	78.5	7.1e-23	N/A	unknown function
UniRef90	UHGV-0171944_39	UniRef90_UPI001D0AE32A	589.0	0	SH3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0171944_39	428127.EUBDOL_01569	275.0	0	N/A	N/A
Pfam	UHGV-0171944_39	PF08460	N/A	N/A	Bacterial SH3 domain	SH3_5
structural_annotation	UHGV-0171944_39	PF08460,PF01551,NF040883,NF033202,COG0739,COG4991	N/A	N/A	N/A	N/A
PHROG	UHGV-0171944_40	phrog_134	63.7	2.3e-18	N/A	unknown function
UniRef90	UHGV-0171944_40	UniRef90_A0A373VIX2	56.6	0.000000000901	XkdX family protein	N/A
Pfam	UHGV-0171944_40	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
NCBIFam	UHGV-0171944_40	TIGR01669.1	N/A	N/A	XkdX family protein	N/A
structural_annotation	UHGV-0171944_40	PF09693,TIGR01669	N/A	N/A	N/A	N/A
PHROG	UHGV-0171944_41	phrog_24451	90.2	2e-26	N/A	unknown function
eggNOG-mapper	UHGV-0171944_41	908340.HMPREF9406_2565	71.6	0.0000000000000124	N/A	N/A
eggNOG-mapper	UHGV-0171944_42	756499.Desde_1105	67.8	0.00000000116	N/A	N/A
structural_annotation	UHGV-0171944_42	PF20086,TIGR04362	N/A	N/A	N/A	N/A
PHROG	UHGV-0171944_44	phrog_24103	91.9	9.5e-28	N/A	unknown function
eggNOG-mapper	UHGV-0171944_44	742735.HMPREF9467_00719	86.7	4.39e-18	N/A	N/A
PHROG	UHGV-0171944_46	phrog_15594	76.0	4.4e-22	N/A	unknown function
eggNOG-mapper	UHGV-0171944_46	1118055.CAGU01000013_gene763	60.5	0.000000000126	N/A	N/A
structural_annotation	UHGV-0171944_46	PF16640,TIGR04488	N/A	N/A	N/A	N/A
PHROG	UHGV-0171944_47	phrog_9534	109.3	5.1e-32	head protein	head and packaging
eggNOG-mapper	UHGV-0171944_47	748224.HMPREF9436_00702	82.0	0.00000000000000269	COG NOG18825 non supervised orthologous group	N/A
PHROG	UHGV-0171944_48	phrog_538	128.6	5.9e-39	minor tail protein	tail
UniRef90	UHGV-0171944_48	UniRef90_UPI00189C3ED1	659.0	0	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-0171944_48	428127.EUBDOL_01212	213.0	0	N/A	N/A
Pfam	UHGV-0171944_48	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0171944_48	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0171944_49	phrog_36410	64.6	1e-18	N/A	unknown function
UniRef90	UHGV-0171944_49	UniRef90_UPI001897DDB7	550.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-0171944_49	428127.EUBDOL_01213	195.0	0	phage tail	N/A
COG	UHGV-0171944_49	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0171944_49	PF16774,PF20753,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0171944_50	phrog_1686	253.6	0	tail length tape measure protein	tail
UniRef90	UHGV-0171944_50	UniRef90_UPI001D0A3DB9	1126.0	0	tape measure protein	N/A
eggNOG-mapper	UHGV-0171944_50	1134413.ANNK01000120_gene2014	192.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0171944_50	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0171944_50	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0171944_50	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0171944_50	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0171944_51	phrog_706	140.5	1.10002e-41	N/A	unknown function
UniRef90	UHGV-0171944_51	UniRef90_UPI001D0AAED0	379.0	0	bacteriophage Gp15 family protein	N/A
eggNOG-mapper	UHGV-0171944_51	999413.HMPREF1094_00208	150.0	1.63952e-43	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0171944_51	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0171944_51	PF06854	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0171944_52	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0171944_53	phrog_3099	76.2	5.1e-22	N/A	unknown function
eggNOG-mapper	UHGV-0171944_53	1280692.AUJL01000004_gene839	51.6	0.00000669	N/A	N/A
structural_annotation	UHGV-0171944_53	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-0171944_54	UniRef90_UPI001D09DA0D	301.0	0	ABC transporter permease	N/A
structural_annotation	UHGV-0171944_54	PF16807	N/A	N/A	N/A	N/A
PHROG	UHGV-0171944_55	phrog_556	49.4	0.000000000000076	minor head protein	head and packaging
UniRef90	UHGV-0171944_55	UniRef90_UPI001D09B824	290.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0171944_55	642492.Clole_0824	64.3	0.0000000000371	Minor capsid protein	N/A
Pfam	UHGV-0171944_55	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0171944_55	PF11114	N/A	N/A	N/A	N/A
UniRef90	UHGV-0171944_56	UniRef90_UPI001E2BB5D0	82.4	7.75e-18	minor capsid protein	N/A
structural_annotation	UHGV-0171944_56	PF20536	N/A	N/A	N/A	N/A
PHROG	UHGV-0171944_58	phrog_212	222.7	0	major head protein	head and packaging
UniRef90	UHGV-0171944_58	UniRef90_UPI00189A455D	508.0	0	phage capsid protein	N/A
eggNOG-mapper	UHGV-0171944_58	552396.HMPREF0863_00277	371.0	0	N/A	N/A
structural_annotation	UHGV-0171944_58	PF05065,MF_04119,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0171944_59	phrog_194	102.3	5.9e-30	head scaffolding protein	head and packaging
UniRef90	UHGV-0171944_59	UniRef90_UPI001D0A686C	327.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0171944_59	1232449.BAHV02000010_gene2713	101.0	1.85e-24	N/A	N/A
Pfam	UHGV-0171944_59	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0171944_59	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0171944_60	phrog_3675	100.1	1.3e-29	N/A	unknown function
UniRef90	UHGV-0171944_60	UniRef90_UPI001D09CC06	204.0	0	YjcQ family protein	N/A
eggNOG-mapper	UHGV-0171944_60	1235799.C818_04221	83.6	1.6e-19	YjcQ protein	N/A
Pfam	UHGV-0171944_60	PF09639	N/A	N/A	YjcQ protein	YjcQ
structural_annotation	UHGV-0171944_60	PF09639,TIGR04176,COG2345	N/A	N/A	N/A	N/A
PHROG	UHGV-0171944_62	phrog_581	276.8	0	minor head protein	head and packaging
UniRef90	UHGV-0171944_62	UniRef90_UPI001D0B3D9B	1126.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0171944_62	552396.HMPREF0863_00280	260.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0171944_62	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0171944_62	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0171944_62	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0171944_63	phrog_533	257.1	0	portal protein	head and packaging
UniRef90	UHGV-0171944_63	UniRef90_UPI001430A874	570.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0171944_63	552396.HMPREF0863_00281	474.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-0171944_63	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0171944_64	552396.HMPREF0863_00282	140.0	1.02e-38	DNA packaging	N/A
COG	UHGV-0171944_64	COG1783	N/A	N/A	Phage terminase large subunit	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0171944	Yes	39,983	43	100	1