vOTU vOTU-046554

vOTU: vOTU-046554

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-046554
Number of genomes	4
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00013 → vGENUS-21242 → vSUBGEN-42320 → vOTU-046554
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0175730
Biosample ID	SAMN09781684
Genome length (bp)	39,735 bps
CheckV completeness	100.00% (Complete)
CDS count	71
CDS density	90.38%
tRNA count	3
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	736	Host agreement	98.37
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0175730_1	phrog_4433	147.8	8.68805e-44	N/A	unknown function
UniRef90	UHGV-0175730_1	UniRef90_A0A6M5C839	99.8	2.77e-23	Putative ADP-ribosyltransferase	N/A
eggNOG-mapper	UHGV-0175730_1	573061.Clocel_3578	103.0	7.08e-24	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0175730_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0175730_1	NF000318	N/A	N/A	N/A	N/A
UniRef90	UHGV-0175730_5	UniRef90_UPI001C2618C7	107.0	2.14e-28	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0175730_5	411483.FAEPRAA2165_00452	50.8	0.000000825	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0175730_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0175730_5	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
KOfam	UHGV-0175730_6	K22300	60.9	3e-17	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0175730_6	phrog_2967	48.0	0.00000000000021	transcriptional regulator	transcription regulation
UniRef90	UHGV-0175730_6	UniRef90_A0A844DFR0	241.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0175730_6	748224.HMPREF9436_01444	172.0	0	N/A	N/A
PADLOC	UHGV-0175730_6	retron_type_VI_hth_cluster2_1	40.7	0.000000000036	N/A	Retron
Pfam	UHGV-0175730_6	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0175730_6	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0175730_6	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0175730_9	phrog_888	66.1	3.2e-35	N/A	unknown function
UniRef90	UHGV-0175730_9	UniRef90_A0A6N7TMA2	412.0	0	SHOCT domain-containing protein	N/A
eggNOG-mapper	UHGV-0175730_9	1415774.U728_165	79.3	0.00000000000000781	Short C-terminal domain	N/A
Pfam	UHGV-0175730_9	PF14471	N/A	N/A	N/A	DUF4428
Pfam	UHGV-0175730_9	PF09851	N/A	N/A	Short C-terminal domain	SHOCT
structural_annotation	UHGV-0175730_9	PF15947,PF14471	N/A	N/A	N/A	N/A
UniRef90	UHGV-0175730_12	UniRef90_A0A6N7TLT0	366.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0175730_12	266265.Bxe_A3948	54.3	0.000000178	Helix-turn-helix domain	N/A
Pfam	UHGV-0175730_12	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0175730_12	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0175730_12	PF13560,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0175730_13	K14059	123.9	2.3e-36	int; integrase	N/A
PHROG	UHGV-0175730_13	phrog_1	105.2	7.7e-31	integrase	integration and excision
UniRef90	UHGV-0175730_13	UniRef90_UPI00130DFBFE	744.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0175730_13	748224.HMPREF9436_03382	628.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0175730_13	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0175730_13	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0175730_13	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0175730_13	PF00589,PF14659,MF_01808,NF007246,COG4973	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0175730_15	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-0175730_16	phrog_20016	201.1	0	N/A	unknown function
UniRef90	UHGV-0175730_16	UniRef90_A0A285PT46	211.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0175730_16	1226322.HMPREF1545_00077	186.0	0	N/A	N/A
structural_annotation	UHGV-0175730_16	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0175730_17	phrog_16490	197.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0175730_17	397290.C810_01328	135.0	3.24e-35	N/A	N/A
PHROG	UHGV-0175730_18	phrog_22984	70.3	2.7e-20	N/A	unknown function
PHROG	UHGV-0175730_19	phrog_21718	88.8	6.2e-26	N/A	unknown function
eggNOG-mapper	UHGV-0175730_19	397290.C810_05210	78.6	3.18e-16	N/A	N/A
PHROG	UHGV-0175730_20	phrog_3754	99.0	4.6e-29	N/A	unknown function
eggNOG-mapper	UHGV-0175730_20	1235790.C805_00054	113.0	9.56e-31	N/A	N/A
COG	UHGV-0175730_22	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-0175730_22	PF13560,NF040522	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0175730_23	PF07374,MF_00245,NF001072,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0175730_25	phrog_15303	110.7	7.5e-33	N/A	unknown function
Pfam	UHGV-0175730_25	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
KOfam	UHGV-0175730_27	K07273	166.1	0	acm; lysozyme	N/A
PHROG	UHGV-0175730_27	phrog_291	119.5	3.4e-35	endolysin	lysis
UniRef90	UHGV-0175730_27	UniRef90_A0A564U0D3	419.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-0175730_27	718252.FP2_04890	258.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0175730_27	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0175730_27	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0175730_27	PF01183,NF007404,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0175730_28	phrog_1382	50.7	0.000000000000014	N/A	unknown function
eggNOG-mapper	UHGV-0175730_28	33035.JPJF01000043_gene998	46.6	0.00000201	N/A	N/A
PHROG	UHGV-0175730_30	phrog_9625	42.7	0.0000000000029	N/A	unknown function
eggNOG-mapper	UHGV-0175730_30	748224.HMPREF9436_01407	145.0	5.84e-36	COG NOG18825 non supervised orthologous group	N/A
structural_annotation	UHGV-0175730_30	MF_04106	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0175730_31	1111121.HMPREF1247_1241	71.6	0.00000000000112	N/A	N/A
structural_annotation	UHGV-0175730_31	PF05709,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0175730_34	phrog_3558	254.1	0	tail protein	tail
UniRef90	UHGV-0175730_34	UniRef90_A0A3E2U3C8	860.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0175730_34	411465.PEPMIC_00746	123.0	6.48e-27	Prophage endopeptidase tail	N/A
Pfam	UHGV-0175730_34	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0175730_34	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0175730_34	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0175730_34	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0175730_35	phrog_28775	127.9	7.8e-38	tail length tape measure protein	tail
UniRef90	UHGV-0175730_35	UniRef90_A0A6N7TLD3	1036.0	0	Tape measure protein	N/A
eggNOG-mapper	UHGV-0175730_35	1492737.FEM08_12070	144.0	4.86e-33	tape measure	N/A
Pfam	UHGV-0175730_35	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0175730_35	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0175730_35	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0175730_35	PF20155,MF_04138,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0175730_37	phrog_885	70.6	2e-20	major tail protein	tail
eggNOG-mapper	UHGV-0175730_37	1111121.HMPREF1247_0789	174.0	0	N/A	N/A
structural_annotation	UHGV-0175730_37	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0175730_38	PF13554	N/A	N/A	N/A	N/A
PHROG	UHGV-0175730_39	phrog_17977	40.5	0.000000000042	N/A	unknown function
UniRef90	UHGV-0175730_39	UniRef90_A0A844DHJ8	121.0	4.02e-33	Phage head closure protein	N/A
structural_annotation	UHGV-0175730_39	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0175730_41	phrog_544	139.1	3.39997e-41	major head protein	head and packaging
UniRef90	UHGV-0175730_41	UniRef90_R0BKA1	436.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0175730_41	476272.RUMHYD_01776	319.0	0	N/A	N/A
structural_annotation	UHGV-0175730_41	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0175730_45	phrog_5	50.8	0.000000000000043	tail completion or Neck1 protein	connector
UniRef90	UHGV-0175730_45	UniRef90_A0A6N7TNP6	300.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0175730_45	1123309.AQYB01000018_gene814	97.4	6.21e-24	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0175730_45	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0175730_45	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0175730_47	phrog_2468	86.2	5.8e-25	head morphogenesis	head and packaging
UniRef90	UHGV-0175730_47	UniRef90_A0A6N7TLR7	613.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0175730_47	1504822.CCNO01000013_gene286	115.0	1.13e-25	cell adhesion	N/A
Pfam	UHGV-0175730_47	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0175730_47	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0175730_47	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0175730_49	phrog_64	129.7	1.1e-38	portal protein	head and packaging
UniRef90	UHGV-0175730_49	UniRef90_A0A6N7TNT3	858.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0175730_49	642492.Clole_2764	85.5	0.00000000000000545	phage portal protein, SPP1	N/A
Pfam	UHGV-0175730_49	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0175730_49	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-0175730_50	K06909	142.5	4.1002e-42	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0175730_50	phrog_10250	174.8	0	N/A	unknown function
UniRef90	UHGV-0175730_50	UniRef90_A0A844D8I4	847.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0175730_50	411490.ANACAC_00783	491.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0175730_50	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-0175730_50	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-0175730_50	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0175730_50	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0175730_50	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-0175730_51	UniRef90_UPI0018CC2891	116.0	2.08e-30	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0175730_51	1235790.C805_00037	110.0	1.04e-28	N/A	N/A
structural_annotation	UHGV-0175730_51	PF04218	N/A	N/A	N/A	N/A
PHROG	UHGV-0175730_52	phrog_36	41.6	0.000000000022	transcriptional regulator	transcription regulation
UniRef90	UHGV-0175730_52	UniRef90_A0A6N7TNN9	67.0	0.0000000000487	N/A	N/A
structural_annotation	UHGV-0175730_52	PF07374	N/A	N/A	N/A	N/A
KOfam	UHGV-0175730_54	K01160	58.1	2.9e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0175730_54	phrog_34	58.0	2.3e-16	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0175730_54	UniRef90_A0A6N7TND6	211.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0175730_54	875454.BAEW01000002_gene491	132.0	1.94e-38	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0175730_54	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0175730_54	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0175730_54	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0175730_55	phrog_3136	107.2	5.1e-32	N/A	unknown function
UniRef90	UHGV-0175730_55	UniRef90_A0A6N7TMC2	155.0	1.26117e-44	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0175730_55	1235793.C809_02645	55.1	0.00000174	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0175730_55	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0175730_55	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0175730_58	445972.ANACOL_00166	106.0	6.64e-28	N/A	N/A
eggNOG-mapper	UHGV-0175730_59	748224.HMPREF9436_03069	79.3	2.62e-17	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0175730_59	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0175730_62	PF11417	N/A	N/A	N/A	N/A
KOfam	UHGV-0175730_63	K02086	61.6	9.4e-18	dnaD; DNA replication protein	N/A
PHROG	UHGV-0175730_63	phrog_186	68.1	1.7e-19	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0175730_63	UniRef90_A0A6N7TLH4	425.0	0	DnaD domain protein	N/A
eggNOG-mapper	UHGV-0175730_63	877411.JMMA01000002_gene2052	62.4	0.0000000143	N/A	N/A
Pfam	UHGV-0175730_63	PF19808	N/A	N/A	N/A	DUF6291
Pfam	UHGV-0175730_63	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-0175730_63	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
structural_annotation	UHGV-0175730_63	PF19808,PF07261,TIGR01446,COG3935	N/A	N/A	N/A	N/A
KOfam	UHGV-0175730_64	K03111	139.9	2.89999e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0175730_64	phrog_44	143.4	1.3004e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0175730_64	UniRef90_D4K451	212.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0175730_64	748224.HMPREF9436_00638	217.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0175730_64	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0175730_64	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0175730_64	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0175730_64	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0175730_64	PF00436,MF_00984,NF005579,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0175730_65	phrog_561	106.2	3.5e-31	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0175730_65	UniRef90_UPI0011C8A287	145.0	3.29e-40	recombinase RecT	N/A
eggNOG-mapper	UHGV-0175730_65	33035.JPJF01000071_gene4462	144.0	3.28001e-40	N/A	N/A
structural_annotation	UHGV-0175730_65	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0175730_67	PF14120	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0175730_68	PF09537	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0175730_69	PF12270,NF040944	N/A	N/A	N/A	N/A
UniRef90	UHGV-0175730_70	UniRef90_UPI00130EBC54	147.0	8.40779e-45	N/A	N/A
eggNOG-mapper	UHGV-0175730_70	1229751.R9QLK3_9CAUD	48.1	0.00000288	N/A	N/A
structural_annotation	UHGV-0175730_70	PF05339,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0175730_71	phrog_27197	87.2	1.4e-25	N/A	unknown function
eggNOG-mapper	UHGV-0175730_71	394503.Ccel_3068	53.5	0.000000196	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0175730_71	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0175730_71	NF007410	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0175730	Yes	39,735	55	100	1
UHGV-0199819	No	28,031	55	66	1
UHGV-0183805	No	24,664	55	58	1
UHGV-0175295	No	14,681	56	35	1