vOTU vOTU-046564

vOTU: vOTU-046564

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-046564
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00373 → vGENUS-00237 → vSUBGEN-26720 → vOTU-046564
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → SFJ001
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0175997
Biosample ID	SAMN09781766
Genome length (bp)	43,196 bps
CheckV completeness	100.00% (Complete)
CDS count	64
CDS density	91.56%
tRNA count	3
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → SFJ001	Total connections	75	Host agreement	80
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0175997_2	K14059	92.9	5.5e-27	int; integrase	N/A
PHROG	UHGV-0175997_2	phrog_1	96.8	3e-28	integrase	integration and excision
UniRef90	UHGV-0175997_2	UniRef90_UPI001897E1C8	161.0	2.9105e-42	site-specific integrase	N/A
eggNOG-mapper	UHGV-0175997_2	1410633.JHWR01000028_gene773	107.0	3.71e-23	Phage integrase family	N/A
Pfam	UHGV-0175997_2	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0175997_2	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0175997_2	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
UniRef90	UHGV-0175997_3	UniRef90_A0A4R1R5G7	77.8	3.22e-18	Anaerobic ribonucleoside-triphosphate reductase-like protein	N/A
eggNOG-mapper	UHGV-0175997_3	658088.HMPREF0987_00997	76.3	2.21e-18	Anaerobic ribonucleoside-triphosphate reductase	N/A
Pfam	UHGV-0175997_3	PF13597	N/A	N/A	Anaerobic ribonucleoside-triphosphate reductase	NRDD
COG	UHGV-0175997_3	COG1328	N/A	N/A	Anaerobic ribonucleoside-triphosphate reductase	N/A
eggNOG-mapper	UHGV-0175997_4	1408437.JNJN01000060_gene452	251.0	0	heme binding	N/A
COG	UHGV-0175997_4	COG0503	N/A	N/A	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	N/A
structural_annotation	UHGV-0175997_6	PF00210,MF_01441,NF011597,COG1528	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0175997_9	PF07638,MF_00674,TIGR02954,COG1846	N/A	N/A	N/A	N/A
PHROG	UHGV-0175997_10	phrog_1129	79.2	3.4e-23	holin	lysis
UniRef90	UHGV-0175997_10	UniRef90_A0A3R5ZDU6	135.0	6.15e-40	Holin	N/A
eggNOG-mapper	UHGV-0175997_10	1256908.HMPREF0373_00463	128.0	1.16e-37	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0175997_10	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0175997_10	PF06946	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0175997_11	97138.C820_00248	62.4	0.00000000000891	N/A	N/A
KOfam	UHGV-0175997_12	K07273	205.7	0	acm; lysozyme	N/A
PHROG	UHGV-0175997_12	phrog_291	157.1	0	endolysin	lysis
UniRef90	UHGV-0175997_12	UniRef90_UPI00164A97A0	208.0	0	glycoside hydrolase family 25 protein	N/A
eggNOG-mapper	UHGV-0175997_12	537013.CLOSTMETH_03464	164.0	4.2039e-45	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0175997_12	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0175997_12	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0175997_12	PF01183,PF05194,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0175997_14	phrog_30034	95.1	1.1e-27	N/A	unknown function
UniRef90	UHGV-0175997_14	UniRef90_A0A3D1XGA4	206.0	0	Chitin-binding type-3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0175997_14	1122971.BAME01000151_gene6566	96.7	2.44e-22	N/A	N/A
Pfam	UHGV-0175997_14	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
KOfam	UHGV-0175997_15	K08131	56.7	1.4e-16	COL9A; collagen type IX alpha	N/A
PHROG	UHGV-0175997_15	phrog_6320	46.9	0.0000000000000016	tail fiber protein	tail
eggNOG-mapper	UHGV-0175997_15	411483.FAEPRAA2165_00757	154.0	2.47e-39	N/A	N/A
Pfam	UHGV-0175997_15	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
eggNOG-mapper	UHGV-0175997_16	665956.HMPREF1032_03918	110.0	1.03e-24	prophage protein Bartonella henselae str. Houston-1 gi 49237922 emb CAF27125.1	N/A
PHROG	UHGV-0175997_17	phrog_13046	42.2	0.0000000000031	N/A	unknown function
eggNOG-mapper	UHGV-0175997_17	693746.OBV_23880	105.0	1.46e-25	N/A	N/A
structural_annotation	UHGV-0175997_17	PF20387	N/A	N/A	N/A	N/A
PHROG	UHGV-0175997_18	phrog_156	235.5	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0175997_18	693746.OBV_23930	463.0	0	N/A	N/A
structural_annotation	UHGV-0175997_18	PF12236,MF_04120,TIGR01542,COG5518	N/A	N/A	N/A	N/A
PHROG	UHGV-0175997_19	phrog_371	139.6	1.40004e-41	major head protein	head and packaging
UniRef90	UHGV-0175997_19	UniRef90_A0A1Y4TDW7	474.0	0	Mu-like_gpT domain-containing protein	N/A
eggNOG-mapper	UHGV-0175997_19	1226322.HMPREF1545_03848	285.0	0	N/A	N/A
Pfam	UHGV-0175997_19	PF10124	N/A	N/A	Mu-like prophage major head subunit gpT	Mu-like_gpT
structural_annotation	UHGV-0175997_19	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0175997_20	phrog_24113	54.4	0.0000000000000018	N/A	unknown function
eggNOG-mapper	UHGV-0175997_20	1226322.HMPREF1545_03847	50.4	0.00000465	N/A	N/A
structural_annotation	UHGV-0175997_20	PF11133,COG5471	N/A	N/A	N/A	N/A
PHROG	UHGV-0175997_21	phrog_35275	60.6	1.1e-17	N/A	unknown function
eggNOG-mapper	UHGV-0175997_21	1226322.HMPREF1545_03846	70.5	0.0000000000384	N/A	N/A
PHROG	UHGV-0175997_24	phrog_3287	177.1	0	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0175997_24	665956.HMPREF1032_03917	671.0	0	N/A	N/A
structural_annotation	UHGV-0175997_24	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
KOfam	UHGV-0175997_25	K21523	41.2	0.0000000000072	gp17; terminase, large subunit [EC:3.1.-.-]	N/A
PHROG	UHGV-0175997_25	phrog_2	101.6	1.2e-29	terminase large subunit	head and packaging
UniRef90	UHGV-0175997_25	UniRef90_UPI001F401ABC	647.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0175997_25	316274.Haur_1384	145.0	1.55e-35	N/A	N/A
Pfam	UHGV-0175997_25	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0175997_25	COG4373	N/A	N/A	Mu-like prophage FluMu protein gp28	N/A
structural_annotation	UHGV-0175997_25	PF03354,PF17289,MF_04146,TIGR01547,COG4373	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0175997_28	PF03869	N/A	N/A	N/A	N/A
PHROG	UHGV-0175997_29	phrog_34979	71.5	1.4e-20	N/A	unknown function
UniRef90	UHGV-0175997_29	UniRef90_A0A1Y3RPR4	103.0	1.4e-25	ArdcN domain-containing protein	N/A
eggNOG-mapper	UHGV-0175997_29	1399942.U3PBI8_9CAUD	64.7	0.000000000013	N/A	N/A
structural_annotation	UHGV-0175997_29	PF08401	N/A	N/A	N/A	N/A
UniRef90	UHGV-0175997_33	UniRef90_W1I3U4	144.0	3.46121e-43	Uncultured bacterium extrachromosomal DNA RGI00970	N/A
eggNOG-mapper	UHGV-0175997_35	1235798.C817_04600	65.1	0.00000000000238	N/A	N/A
structural_annotation	UHGV-0175997_35	PF13560,NF040522	N/A	N/A	N/A	N/A
PHROG	UHGV-0175997_36	phrog_36	73.3	4.3e-21	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0175997_36	469618.FVAG_00790	53.1	0.000000523	N/A	N/A
Pfam	UHGV-0175997_36	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-0175997_36	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0175997_36	PF04545,MF_00674,NF009180,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-0175997_38	phrog_3136	82.9	3.2e-24	N/A	unknown function
eggNOG-mapper	UHGV-0175997_38	97139.C824_00742	54.7	0.000000118	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0175997_38	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
PHROG	UHGV-0175997_40	phrog_6721	286.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0175997_40	478749.BRYFOR_08540	267.0	0	N/A	N/A
structural_annotation	UHGV-0175997_40	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
PHROG	UHGV-0175997_44	phrog_424	112.2	5.1e-33	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0175997_44	UniRef90_R6PFX4	414.0	0	Putative phage reductase	N/A
eggNOG-mapper	UHGV-0175997_44	573063.Metin_0436	75.5	0.000000000000959	PUA domain containing protein	N/A
PADLOC	UHGV-0175997_44	SspD_00001	61.3	3.7e-17	SspD	SSP
Pfam	UHGV-0175997_44	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0175997_44	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0175997_44	PF01507,MF_00063,NF006327,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0175997_46	phrog_236	83.7	4.4e-24	nucleotide kinase	other
UniRef90	UHGV-0175997_46	UniRef90_UPI000D110E3A	97.1	4.57e-24	N/A	N/A
eggNOG-mapper	UHGV-0175997_46	1236504.HMPREF2132_11120	77.8	2.69e-17	N/A	N/A
Pfam	UHGV-0175997_46	PF11753	N/A	N/A	N/A	DUF3310
structural_annotation	UHGV-0175997_46	PF11753	N/A	N/A	N/A	N/A
PHROG	UHGV-0175997_47	phrog_111	166.3	0	DNA methyltransferase	other
UniRef90	UHGV-0175997_47	UniRef90_A0A316S635	219.0	0	Adenine methyltransferase	N/A
eggNOG-mapper	UHGV-0175997_47	760568.Desku_0784	204.0	0	DNA N-6-adenine-methyltransferase	N/A
PADLOC	UHGV-0175997_47	oMTase_00015	184.8	0	orphan methyltransferase	RM
Pfam	UHGV-0175997_47	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
structural_annotation	UHGV-0175997_47	PF05869,MF_03187,TIGR01712,COG2263	N/A	N/A	N/A	N/A
KOfam	UHGV-0175997_48	K01160	44.3	0.000000000005	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0175997_48	phrog_1682	68.4	1.3e-19	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0175997_48	UniRef90_UPI0009406B47	98.2	4.75e-24	endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0175997_48	220668.lp_2433	94.0	3.68e-23	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-0175997_48	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0175997_48	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0175997_49	K02314	225.6	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0175997_49	phrog_19	216.7	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0175997_49	UniRef90_UPI001F1C052D	436.0	0	replicative DNA helicase	N/A
eggNOG-mapper	UHGV-0175997_49	1203606.HMPREF1526_01325	161.0	2.3696e-42	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-0175997_49	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0175997_49	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0175997_49	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0175997_49	PF03796,PF00772,MF_04155,NF005240,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-0175997_50	phrog_270	117.1	2.2e-34	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0175997_50	UniRef90_UPI0011C34505	101.0	2.23e-22	conserved phage C-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0175997_50	1449126.JQKL01000003_gene1705	97.1	2.73e-21	ROK family	N/A
Pfam	UHGV-0175997_50	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0175997_50	COG3355	N/A	N/A	Predicted transcriptional regulator	N/A
structural_annotation	UHGV-0175997_50	PF05584,MF_01819,TIGR01610,COG3355	N/A	N/A	N/A	N/A
KOfam	UHGV-0175997_51	K03111	115.3	9.4e-34	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0175997_51	phrog_44	120.8	1.3e-35	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0175997_51	UniRef90_UPI001F420DC7	135.0	4.7e-38	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0175997_51	748224.HMPREF9436_03359	126.0	3.25e-35	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0175997_51	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0175997_51	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0175997_51	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0175997_51	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0175997_51	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0175997_52	phrog_7566	82.2	4.3e-24	N/A	unknown function
UniRef90	UHGV-0175997_52	UniRef90_A0A8D9UHC0	80.1	2.12e-17	Recombination enhancement function protein nuclease	N/A
eggNOG-mapper	UHGV-0175997_52	693746.OBV_25470	90.1	7.28e-22	N/A	N/A
PHROG	UHGV-0175997_53	phrog_72	61.9	1.1e-17	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0175997_53	UniRef90_UPI000C7BF263	170.0	0	recombination protein NinB	N/A
eggNOG-mapper	UHGV-0175997_53	445972.ANACOL_01825	137.0	9.19e-39	N/A	N/A
structural_annotation	UHGV-0175997_53	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-0175997_54	phrog_7838	132.0	5.4e-39	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0175997_54	UniRef90_A0A8D9UGW3	228.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-0175997_54	742767.HMPREF9456_02052	181.0	0	N/A	N/A
structural_annotation	UHGV-0175997_54	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
PHROG	UHGV-0175997_55	phrog_253	114.5	9.2e-34	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0175997_55	UniRef90_E2ZNS5	152.0	1.4013e-44	Siphovirus Gp157	N/A
eggNOG-mapper	UHGV-0175997_55	748224.HMPREF9436_03356	152.0	2.8026e-45	Siphovirus Gp157	N/A
Pfam	UHGV-0175997_55	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0175997_55	PF05565	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0175997_58	PF10743,NF033787	N/A	N/A	N/A	N/A
PHROG	UHGV-0175997_59	phrog_463	145.0	5.00264e-43	anti-repressor	transcription regulation
UniRef90	UHGV-0175997_59	UniRef90_UPI00137B411D	201.0	0	ORF6C domain-containing protein	N/A
eggNOG-mapper	UHGV-0175997_59	536233.CLO_0860	189.0	0	ORF6C domain	N/A
Pfam	UHGV-0175997_59	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0175997_59	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-0175997_59	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0175997_59	PF10552,PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
UniRef90	UHGV-0175997_60	UniRef90_A0A1C7FQD9	82.8	2.5e-19	Transcriptional regulator	N/A
structural_annotation	UHGV-0175997_60	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0175997_61	UniRef90_UPI001C39F078	60.5	0.00000000452	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0175997_61	1507.HMPREF0262_00424	52.0	0.00000134	Cro/C1-type HTH DNA-binding domain	N/A
COG	UHGV-0175997_61	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0175997_61	PF12844,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0175997_63	1536773.R70331_05415	56.6	0.000000105	N/A	N/A
structural_annotation	UHGV-0175997_63	PF10358	N/A	N/A	N/A	N/A
Pfam	UHGV-0175997_64	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0175997_64	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0175997_64	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0175997	Yes	43,196	55	100	1