vOTU vOTU-046662

vOTU: vOTU-046662

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-046662
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00605 → vGENUS-00605 → vSUBGEN-35724 → vOTU-046662
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Anaerotignaceae → Metalachnospira → Metalachnospira sp900553995
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0178783
Biosample ID	SAMN09781761
Genome length (bp)	43,098 bps
CheckV completeness	100.00% (Complete)
CDS count	64
CDS density	93.70%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Anaerotignaceae → Metalachnospira → Metalachnospira sp900553995	Total connections	7	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0178783_2	phrog_10714	51.7	0.000000000000014	N/A	unknown function
PHROG	UHGV-0178783_3	phrog_21026	60.6	2.6e-17	N/A	unknown function
PHROG	UHGV-0178783_4	phrog_6721	163.0	0	N/A	unknown function
UniRef90	UHGV-0178783_4	UniRef90_A0A373Q5P7	518.0	0	HNHc domain-containing protein	N/A
eggNOG-mapper	UHGV-0178783_4	665956.HMPREF1032_00655	168.0	0	N/A	N/A
PADLOC	UHGV-0178783_4	HEase_00016	70.6	3.6e-20	homing endonuclease	RM
Pfam	UHGV-0178783_4	PF13392	N/A	N/A	HNH endonuclease	HNH_3
Pfam	UHGV-0178783_4	PF04218	N/A	N/A	CENP-B N-terminal DNA-binding domain	CENP-B_N
structural_annotation	UHGV-0178783_4	PF02796,PF07463,TIGR02170	N/A	N/A	N/A	N/A
PHROG	UHGV-0178783_5	phrog_2245	69.7	4.9e-20	nucleoside triphosphate pyrophosphohydrolase	other
eggNOG-mapper	UHGV-0178783_5	658655.HMPREF0988_00885	55.5	0.0000000163	N/A	N/A
PHROG	UHGV-0178783_6	phrog_474	103.9	2.7e-30	phosphofructokinase	other
UniRef90	UHGV-0178783_6	UniRef90_A0A2V2EHL9	108.0	1.22e-28	N/A	N/A
eggNOG-mapper	UHGV-0178783_6	1123247.AUIJ01000002_gene2234	83.2	1.42e-19	N/A	N/A
Pfam	UHGV-0178783_6	PF19905	N/A	N/A	N/A	DUF6378
structural_annotation	UHGV-0178783_6	PF19905	N/A	N/A	N/A	N/A
UniRef90	UHGV-0178783_7	UniRef90_K1SN71	48.9	0.00000404	HTH_30 domain-containing protein	N/A
COG	UHGV-0178783_7	COG3835	N/A	N/A	Sugar diacid utilization regulator CdaR	N/A
structural_annotation	UHGV-0178783_7	PF13556,TIGR00637,COG2771	N/A	N/A	N/A	N/A
PHROG	UHGV-0178783_8	phrog_36	61.5	1.8e-17	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0178783_8	879310.HMPREF9162_0063	50.1	0.00000841	sigma factor activity	N/A
Pfam	UHGV-0178783_8	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
COG	UHGV-0178783_8	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0178783_8	PF07374,MF_00674,NF008895,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-0178783_9	phrog_374	81.2	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0178783_9	UniRef90_UPI0011776FE3	184.0	0	AP2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0178783_9	1437363.A0A090C6M5_9CAUD	145.0	1.2e-40	HNH endonuclease	N/A
structural_annotation	UHGV-0178783_9	PF18337,PF00847	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0178783_12	PF03869,NF010256	N/A	N/A	N/A	N/A
KOfam	UHGV-0178783_13	K07474	96.8	4.9e-28	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0178783_13	phrog_51	106.0	3.9e-31	terminase small subunit	head and packaging
UniRef90	UHGV-0178783_13	UniRef90_UPI00045EAA25	106.0	4.83e-26	terminase small subunit	N/A
eggNOG-mapper	UHGV-0178783_13	1298920.KI911353_gene4857	106.0	9.74e-27	Terminase small subunit	N/A
Pfam	UHGV-0178783_13	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0178783_13	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0178783_13	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-0178783_14	K21523	54.2	6.6e-27	gp17; terminase, large subunit [EC:3.1.-.-]	N/A
PHROG	UHGV-0178783_14	phrog_2	94.1	1.9e-27	terminase large subunit	head and packaging
UniRef90	UHGV-0178783_14	UniRef90_R5AHR8	596.0	0	Putative terminase large subunit	N/A
eggNOG-mapper	UHGV-0178783_14	693746.OBV_23980	513.0	0	phage Terminase large subunit	N/A
COG	UHGV-0178783_14	COG4373	N/A	N/A	Mu-like prophage FluMu protein gp28	N/A
structural_annotation	UHGV-0178783_14	PF03237,PF17289,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0178783_15	phrog_156	241.7	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0178783_15	693746.OBV_23930	491.0	0	N/A	N/A
structural_annotation	UHGV-0178783_15	PF16510,MF_04120,TIGR01542,COG4695	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0178783_17	693746.OBV_23910	60.5	0.000000139	N/A	N/A
PHROG	UHGV-0178783_18	phrog_24113	45.9	0.00000000000069	N/A	unknown function
structural_annotation	UHGV-0178783_18	PF11133,COG5471	N/A	N/A	N/A	N/A
PHROG	UHGV-0178783_19	phrog_371	134.1	9.2e-40	major head protein	head and packaging
UniRef90	UHGV-0178783_19	UniRef90_UPI001C11985C	492.0	0	Mu-like prophage major head subunit gpT family protein	N/A
eggNOG-mapper	UHGV-0178783_19	1519439.JPJG01000060_gene1890	281.0	0	N/A	N/A
Pfam	UHGV-0178783_19	PF10124	N/A	N/A	Mu-like prophage major head subunit gpT	Mu-like_gpT
structural_annotation	UHGV-0178783_19	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0178783_20	phrog_13046	53.2	0.0000000000000048	N/A	unknown function
eggNOG-mapper	UHGV-0178783_20	693746.OBV_23880	131.0	2.18e-35	N/A	N/A
structural_annotation	UHGV-0178783_20	PF20387	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0178783_21	665956.HMPREF1032_03917	510.0	0	N/A	N/A
structural_annotation	UHGV-0178783_21	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0178783_25	537013.CLOSTMETH_03776	80.1	0.000000000000351	N/A	N/A
eggNOG-mapper	UHGV-0178783_26	476272.RUMHYD_00002	92.0	3.37e-18	N/A	N/A
PHROG	UHGV-0178783_27	phrog_1863	73.8	1.3e-21	N/A	unknown function
eggNOG-mapper	UHGV-0178783_27	748224.HMPREF9436_00408	107.0	1.07e-29	N/A	N/A
PHROG	UHGV-0178783_28	phrog_1129	66.8	2.5e-19	holin	lysis
UniRef90	UHGV-0178783_28	UniRef90_UPI001C1096AE	143.0	7.32879e-43	phage holin family protein	N/A
eggNOG-mapper	UHGV-0178783_28	702450.CUW_0551	105.0	7.11e-29	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0178783_28	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0178783_28	PF06946	N/A	N/A	N/A	N/A
KOfam	UHGV-0178783_29	K17733	115.1	6.4e-34	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	N/A
PHROG	UHGV-0178783_29	phrog_6523	136.7	2e-40	endolysin	lysis
UniRef90	UHGV-0178783_29	UniRef90_F2JNY6	172.0	0	Peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin	N/A
eggNOG-mapper	UHGV-0178783_29	642492.Clole_1880	172.0	0	D-alanyl-D-alanine carboxypeptidase	N/A
Pfam	UHGV-0178783_29	PF13539	N/A	N/A	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
COG	UHGV-0178783_29	COG1876	N/A	N/A	LD-carboxypeptidase LdcB, LAS superfamily	N/A
structural_annotation	UHGV-0178783_29	PF02557,MF_01924,NF000380,COG1876	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0178783_30	PF09486,NF038305	N/A	N/A	N/A	N/A
PHROG	UHGV-0178783_31	phrog_9854	128.9	2.9e-38	N/A	unknown function
eggNOG-mapper	UHGV-0178783_31	1121091.AUMP01000003_gene2597	275.0	0	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis	N/A
Pfam	UHGV-0178783_31	PF18819	N/A	N/A	Phage MuF-C-terminal domain	MuF_C
Pfam	UHGV-0178783_31	PF18857	N/A	N/A	Large polyvalent protein associated domain 38	LPD38
COG	UHGV-0178783_31	COG0503	N/A	N/A	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	N/A
Pfam	UHGV-0178783_32	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
structural_annotation	UHGV-0178783_32	PF04545,MF_00245,NF001067,COG2771	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0178783_35	445972.ANACOL_01884	56.2	0.0000000182	N/A	N/A
KOfam	UHGV-0178783_36	K14059	157.3	0	int; integrase	N/A
PHROG	UHGV-0178783_36	phrog_1	168.4	0	integrase	integration and excision
UniRef90	UHGV-0178783_36	UniRef90_UPI001C109D33	462.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0178783_36	1462527.CCDM010000010_gene473	302.0	0	Phage integrase family	N/A
Pfam	UHGV-0178783_36	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0178783_36	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0178783_36	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0178783_39	K18830	58.3	1.5e-16	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0178783_39	phrog_4	54.1	0.0000000000000038	transcriptional repressor	transcription regulation
UniRef90	UHGV-0178783_39	UniRef90_A0A3E4LWU1	118.0	1.11e-31	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0178783_39	97138.C820_01960	116.0	1.24e-31	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0178783_39	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0178783_39	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0178783_39	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0178783_44	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
Pfam	UHGV-0178783_45	PF05534	N/A	N/A	HicB family	HicB
UniRef90	UHGV-0178783_46	UniRef90_UPI00048E944E	50.1	0.000000934	N/A	N/A
eggNOG-mapper	UHGV-0178783_46	1378168.N510_00491	69.7	0.00000000000000241	N/A	N/A
structural_annotation	UHGV-0178783_46	PF03869,NF008671,COG4877	N/A	N/A	N/A	N/A
UniRef90	UHGV-0178783_55	UniRef90_A0A7X9AE52	127.0	6.7e-32	N/A	N/A
eggNOG-mapper	UHGV-0178783_55	1127692.HMPREF9075_00081	64.7	0.00000000213	N/A	N/A
structural_annotation	UHGV-0178783_55	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-0178783_56	phrog_7838	129.0	4.1e-38	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0178783_56	UniRef90_A0A8D9UGW3	175.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-0178783_56	742767.HMPREF9456_02052	189.0	0	N/A	N/A
structural_annotation	UHGV-0178783_56	PF04098,TIGR00607,COG5055	N/A	N/A	N/A	N/A
PHROG	UHGV-0178783_57	phrog_72	69.6	4.5e-20	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0178783_57	UniRef90_UPI000C7BF263	129.0	1.57e-34	recombination protein NinB	N/A
eggNOG-mapper	UHGV-0178783_57	1399942.U3PCT8_9CAUD	130.0	1.35e-35	N/A	N/A
structural_annotation	UHGV-0178783_57	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0178783_58	phrog_7566	83.0	2.4e-24	N/A	unknown function
eggNOG-mapper	UHGV-0178783_58	1443125.Z962_p0035	55.1	0.0000000284	endonuclease activity	N/A
COG	UHGV-0178783_58	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
KOfam	UHGV-0178783_59	K01160	60.4	5.9e-17	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0178783_59	phrog_140	133.2	1.5e-39	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0178783_59	UniRef90_A0A136WJ13	151.0	9.80909e-45	Endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-0178783_59	1095750.HMPREF9970_1673	111.0	1.66e-29	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0178783_59	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0178783_59	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0178783_59	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0178783_60	phrog_16304	57.4	3.8e-16	N/A	unknown function
UniRef90	UHGV-0178783_60	UniRef90_UPI00191FEC8B	65.1	0.00000000000323	N/A	N/A
eggNOG-mapper	UHGV-0178783_60	33035.JPJF01000071_gene4467	55.1	0.0000000537	N/A	N/A
Pfam	UHGV-0178783_60	PF19808	N/A	N/A	N/A	DUF6291
PHROG	UHGV-0178783_61	phrog_10469	110.5	1.4e-32	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0178783_61	UniRef90_A0A350TWM2	157.0	3.48923e-43	N/A	N/A
eggNOG-mapper	UHGV-0178783_61	97138.C820_00775	137.0	4.88e-36	DnaD domain protein	N/A
Pfam	UHGV-0178783_61	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-0178783_61	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
PHROG	UHGV-0178783_62	phrog_9804	165.4	0	N/A	unknown function
UniRef90	UHGV-0178783_62	UniRef90_R6M669	150.0	9.54284e-43	Inhibitor_G39P domain-containing protein	N/A
eggNOG-mapper	UHGV-0178783_62	1121344.JHZO01000003_gene981	131.0	3.14e-36	Loader and inhibitor of phage G40P	N/A
AcrCatalog	UHGV-0178783_62	cluster_137185	37.4	0.000031	NA	N/A
Pfam	UHGV-0178783_62	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-0178783_62	PF11417	N/A	N/A	N/A	N/A
KOfam	UHGV-0178783_63	K03111	143.4	2.49992e-42	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0178783_63	phrog_44	143.7	1.10002e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0178783_63	UniRef90_A0A2V2C1N3	222.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0178783_63	97138.C820_02339	191.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0178783_63	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0178783_63	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0178783_63	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0178783_63	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0178783_63	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0178783_64	phrog_14105	58.2	1.1e-16	N/A	unknown function
eggNOG-mapper	UHGV-0178783_64	573061.Clocel_3578	59.3	0.0000000275	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0178783_64	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0178783	Yes	43,098	38	100	1