vOTU vOTU-046701

vOTU: vOTU-046701

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-046701
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00139 → vSUBFAM-01039 → vGENUS-02326 → vSUBGEN-03146 → vOTU-046701
Host lineage	Bacteria → Desulfobacterota_I → Desulfovibrionia → Desulfovibrionales → Desulfovibrionaceae → Desulfovibrio → Desulfovibrio sp900319575
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0180316
Biosample ID	N/A
Genome length (bp)	38,696 bps
CheckV completeness	100.00% (Complete)
CDS count	61
CDS density	93.33%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Desulfobacterota_I → Desulfovibrionia → Desulfovibrionales → Desulfovibrionaceae → Desulfovibrio → Desulfovibrio sp900319575	Total connections	8	Host agreement	87.5
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0180316_3	K03554	54.0	0.0000000000000016	rdgC; recombination associated protein RdgC	N/A
UniRef90	UHGV-0180316_3	UniRef90_A0A1Y4DA61	241.0	0	Recombination-associated protein RdgC	N/A
eggNOG-mapper	UHGV-0180316_3	457398.HMPREF0326_01443	243.0	0	Putative exonuclease, RdgC	N/A
COG	UHGV-0180316_3	COG2974	N/A	N/A	DNA recombination-dependent growth factor RdgC	N/A
structural_annotation	UHGV-0180316_3	PF04381,MF_00194,NF001465,COG2974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0180316_4	665942.HMPREF1022_02275	57.0	0.0000000078	cytolysis by virus of host cell	N/A
COG	UHGV-0180316_4	COG3772	N/A	N/A	Phage-related lysozyme (muramidase), GH24 family	N/A
KOfam	UHGV-0180316_7	K14059	131.3	1.2e-38	int; integrase	N/A
PHROG	UHGV-0180316_7	phrog_1	126.4	3.1e-37	integrase	integration and excision
UniRef90	UHGV-0180316_7	UniRef90_UPI000496F64A	235.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0180316_7	1414719.CBYN010000008_gene1338	62.8	0.0000000249	Belongs to the 'phage' integrase family. XerC subfamily	N/A
Pfam	UHGV-0180316_7	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0180316_7	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0180316_7	PF00589,PF13495,PF02920,MF_01808,TIGR02225,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0180316_11	phrog_774	58.5	1.6e-16	N/A	unknown function
UniRef90	UHGV-0180316_11	UniRef90_U4KJB1	64.3	0.00000000000476	N/A	N/A
eggNOG-mapper	UHGV-0180316_11	397290.C810_05225	58.9	0.000000000215	N/A	N/A
NCBIFam	UHGV-0180316_12	NF040910.1	N/A	N/A	CD1375 family protein	N/A
structural_annotation	UHGV-0180316_12	NF040910	N/A	N/A	N/A	N/A
PHROG	UHGV-0180316_13	phrog_1807	51.6	0.000000000000012	tail fiber protein	tail
eggNOG-mapper	UHGV-0180316_13	1408428.JNJP01000079_gene3366	58.9	0.0000000231	N/A	N/A
PHROG	UHGV-0180316_14	phrog_523	49.8	0.00000000000006	tail collar fiber protein	tail
UniRef90	UHGV-0180316_14	UniRef90_C3X3R4	118.0	3.14e-29	Collar domain-containing protein	N/A
eggNOG-mapper	UHGV-0180316_14	556268.OFAG_01003	118.0	5.27e-30	Phage Tail Collar Domain	N/A
Pfam	UHGV-0180316_14	PF07484	N/A	N/A	Phage Tail Collar Domain	Collar
COG	UHGV-0180316_14	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0180316_14	PF07484,COG4675	N/A	N/A	N/A	N/A
PHROG	UHGV-0180316_15	phrog_3342	56.1	4.5e-16	N/A	unknown function
UniRef90	UHGV-0180316_15	UniRef90_UPI00093DFF4A	67.0	0.000000000000893	pseudouridine synthase	N/A
eggNOG-mapper	UHGV-0180316_15	411464.DESPIG_00856	85.1	2.07e-20	N/A	N/A
PHROG	UHGV-0180316_16	phrog_1348	49.7	0.000000000000085	tail fiber protein	tail
UniRef90	UHGV-0180316_16	UniRef90_UPI001D0B8BAB	163.0	0	N/A	N/A
eggNOG-mapper	UHGV-0180316_16	665942.HMPREF1022_02677	92.0	5.95e-20	N/A	N/A
Pfam	UHGV-0180316_16	PF14301	N/A	N/A	N/A	DUF4376
structural_annotation	UHGV-0180316_16	PF14301	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0180316_18	264203.ZMO0395	53.1	0.00000252	N/A	N/A
structural_annotation	UHGV-0180316_18	PF07484,COG4675	N/A	N/A	N/A	N/A
PHROG	UHGV-0180316_20	phrog_13634	63.8	1.6e-18	N/A	unknown function
eggNOG-mapper	UHGV-0180316_20	1238450.VIBNISOn1_1190023	81.6	0.000000000000131	N/A	N/A
Pfam	UHGV-0180316_20	PF21277	N/A	N/A	Type VI secretion system spike protein VgrG3-like, C-terminal	T6SS_VgrG3-like_C
PHROG	UHGV-0180316_21	phrog_4287	51.0	0.000000000000024	DNA ejection protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0180316_21	1380394.JADL01000008_gene3756	102.0	7.15e-23	N/A	N/A
eggNOG-mapper	UHGV-0180316_22	1121441.AUCX01000001_gene2680	53.1	0.00000375	N/A	N/A
structural_annotation	UHGV-0180316_22	PF11039,MF_02210,NF011709,COG1670	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0180316_25	PF15868,NF012201	N/A	N/A	N/A	N/A
PHROG	UHGV-0180316_26	phrog_3287	144.0	1.00053e-42	virion structural protein	head and packaging
UniRef90	UHGV-0180316_26	UniRef90_A0A7S5Y917	158.0	2.22e-39	Stabilization protein	N/A
eggNOG-mapper	UHGV-0180316_26	1380394.JADL01000008_gene3759	229.0	0	N/A	N/A
structural_annotation	UHGV-0180316_26	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
PHROG	UHGV-0180316_28	phrog_240	81.7	9.7e-24	head protein	head and packaging
UniRef90	UHGV-0180316_28	UniRef90_A0A401JF42	90.1	2.65e-20	N/A	N/A
eggNOG-mapper	UHGV-0180316_28	1430331.EP10_10445	99.4	3.67e-25	Belongs to the glycosyl hydrolase 8 (cellulase D) family	N/A
COG	UHGV-0180316_28	COG3405	N/A	N/A	Endo-1,4-beta-D-glucanase Y	N/A
PHROG	UHGV-0180316_29	phrog_2941	129.4	2.2e-38	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0180316_29	579138.Zymop_0816	83.2	9.36e-17	N/A	N/A
structural_annotation	UHGV-0180316_29	PF20387	N/A	N/A	N/A	N/A
PHROG	UHGV-0180316_31	phrog_1328	264.5	0	major head protein	head and packaging
UniRef90	UHGV-0180316_31	UniRef90_UPI00097D27EC	443.0	0	N/A	N/A
eggNOG-mapper	UHGV-0180316_31	1380394.JADL01000008_gene3764	201.0	0	N/A	N/A
Pfam	UHGV-0180316_31	PF17236	N/A	N/A	N/A	DUF5309
structural_annotation	UHGV-0180316_31	PF17236,MF_04119,NF033394,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0180316_32	phrog_3927	74.3	2.5e-21	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0180316_32	398578.Daci_1945	66.6	0.00000000147	N/A	N/A
PHROG	UHGV-0180316_34	phrog_1216	341.7	0	portal protein	head and packaging
UniRef90	UHGV-0180316_34	UniRef90_A0A516LL11	269.0	0	Putative portal protein	N/A
eggNOG-mapper	UHGV-0180316_34	1380394.JADL01000008_gene3768	275.0	0	Membrane	N/A
COG	UHGV-0180316_34	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-0180316_34	PF12236,MF_04120,TIGR01542,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0180316_35	K06909	293.5	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0180316_35	phrog_3717	226.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-0180316_35	UniRef90_A0A6B3UE32	401.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0180316_35	1217652.F954_02867	352.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0180316_35	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
NCBIFam	UHGV-0180316_35	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0180316_35	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0180316_35	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0180316_36	phrog_12540	44.2	0.000000000003	N/A	unknown function
UniRef90	UHGV-0180316_36	UniRef90_A0A5Q2W839	80.5	1.04e-16	Putative DNA binding domain	N/A
PHROG	UHGV-0180316_38	phrog_1544	86.4	3.4e-25	N/A	unknown function
UniRef90	UHGV-0180316_38	UniRef90_A0A388SKI6	133.0	2.4e-36	N/A	N/A
eggNOG-mapper	UHGV-0180316_38	207559.Dde_2569	138.0	9.61e-39	Glycosyl hydrolase 108	N/A
COG	UHGV-0180316_38	COG3926	N/A	N/A	Lysozyme family protein	N/A
UniRef90	UHGV-0180316_39	UniRef90_UPI001956181E	125.0	3.77e-31	right-handed parallel beta-helix repeat-containing protein	N/A
eggNOG-mapper	UHGV-0180316_39	525146.Ddes_0259	141.0	4.15e-38	N/A	N/A
structural_annotation	UHGV-0180316_39	PF00544,COG3866	N/A	N/A	N/A	N/A
PHROG	UHGV-0180316_40	phrog_24780	48.5	0.000000000000045	N/A	unknown function
UniRef90	UHGV-0180316_40	UniRef90_G1UQN0	121.0	1.21e-30	Pesticin domain-containing protein	N/A
eggNOG-mapper	UHGV-0180316_40	665942.HMPREF1022_00903	121.0	2.02e-31	Bacterial toxin homologue of phage lysozyme, C-term	N/A
Pfam	UHGV-0180316_40	PF16754	N/A	N/A	Bacterial toxin homologue of phage lysozyme, C-term	Pesticin
COG	UHGV-0180316_40	COG5276	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0180316_40	PF16754,MF_04136,COG3772	N/A	N/A	N/A	N/A
UniRef90	UHGV-0180316_41	UniRef90_A0A1I3RMH7	73.9	2.01e-16	Anaerobic ribonucleoside-triphosphate reductase	N/A
eggNOG-mapper	UHGV-0180316_41	762983.HMPREF9444_00728	74.3	3.2e-17	Anaerobic ribonucleoside-triphosphate reductase	N/A
Pfam	UHGV-0180316_41	PF13597	N/A	N/A	Anaerobic ribonucleoside-triphosphate reductase	NRDD
COG	UHGV-0180316_41	COG1328	N/A	N/A	Anaerobic ribonucleoside-triphosphate reductase	N/A
KOfam	UHGV-0180316_44	K06223	184.6	0	dam; DNA adenine methylase [EC:2.1.1.72]	N/A
PHROG	UHGV-0180316_44	phrog_56	137.1	1.6e-40	DNA methyltransferase	other
UniRef90	UHGV-0180316_44	UniRef90_UPI0018A89FCC	204.0	0	DNA adenine methylase	N/A
eggNOG-mapper	UHGV-0180316_44	1441930.Z042_22915	196.0	0	D12 class N6 adenine-specific DNA methyltransferase	N/A
PADLOC	UHGV-0180316_44	MTase_II_00030	149.1	3.92364e-44	Type II methyltransferase	RM
Pfam	UHGV-0180316_44	PF02086	N/A	N/A	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
COG	UHGV-0180316_44	COG0338	N/A	N/A	DNA-adenine methylase	N/A
structural_annotation	UHGV-0180316_44	PF02086,MF_01872,NF008152,COG0338	N/A	N/A	N/A	N/A
PHROG	UHGV-0180316_46	phrog_474	118.8	3.5e-35	phosphofructokinase	other
UniRef90	UHGV-0180316_46	UniRef90_UPI000414C004	103.0	2.54e-26	N/A	N/A
eggNOG-mapper	UHGV-0180316_46	1123247.AUIJ01000002_gene2234	103.0	4.26e-27	N/A	N/A
Pfam	UHGV-0180316_46	PF19905	N/A	N/A	N/A	DUF6378
structural_annotation	UHGV-0180316_46	PF19905	N/A	N/A	N/A	N/A
PHROG	UHGV-0180316_47	phrog_323	43.1	0.0000000000068	endonuclease	DNA, RNA and nucleotide metabolism
Pfam	UHGV-0180316_47	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
Pfam	UHGV-0180316_47	PF19889	N/A	N/A	N/A	DUF6362
dbAPIS	UHGV-0180316_47	APIS006	N/A	N/A	Trigger programmed cell death (PCD) by P4 prophage.	N/A
PHROG	UHGV-0180316_49	phrog_824	152.7	1.4013e-45	N/A	unknown function
UniRef90	UHGV-0180316_49	UniRef90_G1V4V4	136.0	2.59e-38	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0180316_49	1408428.JNJP01000030_gene973	134.0	5.1e-38	VRR_NUC	N/A
Pfam	UHGV-0180316_49	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
KOfam	UHGV-0180316_50	K03111	107.6	1.9e-31	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0180316_50	phrog_44	94.2	1.9e-27	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0180316_50	UniRef90_UPI000378B16C	113.0	3.91e-29	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0180316_50	1121459.AQXE01000010_gene1906	106.0	1.88e-27	PFAM single-strand binding protein Primosomal replication protein n	N/A
Pfam	UHGV-0180316_50	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0180316_50	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0180316_50	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0180316_50	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0180316_50	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0180316_51	K02315	173.9	0	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0180316_51	phrog_50	162.8	0	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0180316_51	UniRef90_A0A059WFK9	187.0	0	IstB-like ATP binding protein	N/A
eggNOG-mapper	UHGV-0180316_51	1476902.A0A067ZJ24_9CAUD	187.0	0	IstB-like ATP binding protein	N/A
Pfam	UHGV-0180316_51	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
structural_annotation	UHGV-0180316_51	PF01695,MF_01919,NF005931,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-0180316_52	phrog_9474	48.6	0.000000000000056	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0180316_52	1408428.JNJP01000025_gene276	73.2	0.0000000000221	N/A	N/A
COG	UHGV-0180316_53	COG3355	N/A	N/A	Predicted transcriptional regulator	N/A
KOfam	UHGV-0180316_55	K01356	83.8	3.2e-24	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0180316_55	phrog_4	102.0	7.1e-30	transcriptional repressor	transcription regulation
UniRef90	UHGV-0180316_55	UniRef90_A0A4Q0MVQ8	180.0	0	Peptidase_S24 domain-containing protein	N/A
eggNOG-mapper	UHGV-0180316_55	1121447.JONL01000002_gene2189	71.2	0.00000000000385	CI repressor	N/A
Pfam	UHGV-0180316_55	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0180316_55	COG2932	N/A	N/A	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	N/A
structural_annotation	UHGV-0180316_55	PF00717,PF01381,MF_00015,NF041951,NF007621,COG2932	N/A	N/A	N/A	N/A
KOfam	UHGV-0180316_60	K07465	66.5	4.5e-19	K07465; putative RecB family exonuclease	N/A
PHROG	UHGV-0180316_60	phrog_69	77.5	2.4e-22	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0180316_60	UniRef90_A0A807ZPP9	318.0	0	Nuclease	N/A
eggNOG-mapper	UHGV-0180316_60	411464.DESPIG_01319	318.0	0	PD-(D/E)XK nuclease superfamily	N/A
Pfam	UHGV-0180316_60	PF12705	N/A	N/A	PD-(D/E)XK nuclease superfamily	PDDEXK_1
COG	UHGV-0180316_60	COG2887	N/A	N/A	RecB family exonuclease	N/A
structural_annotation	UHGV-0180316_60	PF12705,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-0180316_61	phrog_561	160.0	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0180316_61	UniRef90_UPI0019565AE5	183.0	0	recombinase RecT	N/A
eggNOG-mapper	UHGV-0180316_61	563192.HMPREF0179_00147	205.0	0	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0180316	Yes	38,696	58	100	1
UHGV-0213497	No	38,696	58	100	1