vOTU vOTU-047168

vOTU: vOTU-047168

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-047168
Number of genomes	2
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00013 → vGENUS-16775 → vSUBGEN-30588 → vOTU-047168
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0191437
Biosample ID	SAMN09781786
Genome length (bp)	43,305 bps
CheckV completeness	100.00% (Complete)
CDS count	65
CDS density	89.48%
tRNA count	3
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	421	Host agreement	97.15
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0191437_1	phrog_544	119.7	2.7e-35	major head protein	head and packaging
UniRef90	UHGV-0191437_1	UniRef90_R0BKA1	348.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0191437_1	476272.RUMHYD_01776	256.0	0	N/A	N/A
PHROG	UHGV-0191437_3	phrog_17977	48.8	0.000000000000091	N/A	unknown function
UniRef90	UHGV-0191437_3	UniRef90_A0A844DHJ8	236.0	0	Phage head closure protein	N/A
structural_annotation	UHGV-0191437_3	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0191437_4	PF13554	N/A	N/A	N/A	N/A
PHROG	UHGV-0191437_5	phrog_885	63.1	3.5e-18	major tail protein	tail
UniRef90	UHGV-0191437_5	UniRef90_A0A843J9F0	128.0	4.89e-33	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0191437_5	642492.Clole_1864	55.8	0.000000485	N/A	N/A
structural_annotation	UHGV-0191437_5	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0191437_8	phrog_28775	138.7	2.20004e-41	tail length tape measure protein	tail
UniRef90	UHGV-0191437_8	UniRef90_A0A844DDD5	1184.0	0	Tape measure protein	N/A
eggNOG-mapper	UHGV-0191437_8	1492737.FEM08_12070	141.0	2.48e-32	tape measure	N/A
Pfam	UHGV-0191437_8	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0191437_8	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0191437_8	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0191437_8	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0191437_9	phrog_3558	271.2	0	tail protein	tail
UniRef90	UHGV-0191437_9	UniRef90_A0A844DGT5	1133.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0191437_9	1391188.A0A068EMP3_9CAUD	134.0	6.22e-29	N/A	N/A
Pfam	UHGV-0191437_9	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
structural_annotation	UHGV-0191437_9	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0191437_11	1304866.K413DRAFT_1235	56.2	0.000000475	PFAM Phage tail protein	N/A
COG	UHGV-0191437_11	COG4722	N/A	N/A	Phage-related protein YomH	N/A
COG	UHGV-0191437_12	COG5492	N/A	N/A	N/A	N/A
PHROG	UHGV-0191437_13	phrog_10993	286.4	0	Hoc-like head decoration	head and packaging
UniRef90	UHGV-0191437_13	UniRef90_UPI00082CBED4	243.0	0	N/A	N/A
eggNOG-mapper	UHGV-0191437_13	1121334.KB911071_gene1970	197.0	0	N/A	N/A
Pfam	UHGV-0191437_13	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0191437_13	PF19789	N/A	N/A	N/A	N/A
KOfam	UHGV-0191437_15	K07273	178.7	0	acm; lysozyme	N/A
PHROG	UHGV-0191437_15	phrog_291	144.1	1.10002e-42	endolysin	lysis
UniRef90	UHGV-0191437_15	UniRef90_E2ZES5	330.0	0	Glycosyl hydrolase family 25	N/A
eggNOG-mapper	UHGV-0191437_15	748224.HMPREF9436_00154	330.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0191437_15	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0191437_15	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0191437_15	PF01183,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0191437_17	phrog_15303	117.2	7.6e-35	N/A	unknown function
Pfam	UHGV-0191437_17	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
KOfam	UHGV-0191437_18	K24213	86.1	2.1e-25	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	N/A
PHROG	UHGV-0191437_18	phrog_6320	86.0	5.7e-25	tail fiber protein	tail
eggNOG-mapper	UHGV-0191437_18	411483.FAEPRAA2165_00757	171.0	5.60519e-45	N/A	N/A
Pfam	UHGV-0191437_18	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
structural_annotation	UHGV-0191437_18	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-0191437_21	phrog_3754	95.2	5.7e-28	N/A	unknown function
eggNOG-mapper	UHGV-0191437_21	1485543.JMME01000025_gene2462	103.0	2.79e-27	N/A	N/A
PHROG	UHGV-0191437_22	phrog_21718	115.9	2.9e-34	N/A	unknown function
eggNOG-mapper	UHGV-0191437_22	397290.C810_05210	97.1	2.14e-23	N/A	N/A
PHROG	UHGV-0191437_23	phrog_22984	85.6	3.2e-25	N/A	unknown function
PHROG	UHGV-0191437_24	phrog_59	145.9	1.30321e-43	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0191437_24	UniRef90_A0A8I2AQR4	129.0	3.26e-34	NUMOD4 motif-containing HNH endonuclease	N/A
eggNOG-mapper	UHGV-0191437_24	357276.EL88_11520	124.0	1.07e-33	HNH endonuclease domain protein	N/A
PADLOC	UHGV-0191437_24	HEase_00016	88.5	1.3e-25	homing endonuclease	RM
Pfam	UHGV-0191437_24	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
Pfam	UHGV-0191437_24	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-0191437_24	PF07463,PF07453	N/A	N/A	N/A	N/A
PHROG	UHGV-0191437_25	phrog_16490	141.0	6.60012e-42	N/A	unknown function
eggNOG-mapper	UHGV-0191437_25	1408437.JNJN01000043_gene803	121.0	8.83e-31	N/A	N/A
PHROG	UHGV-0191437_26	phrog_20016	196.9	0	N/A	unknown function
UniRef90	UHGV-0191437_26	UniRef90_A0A285PT46	205.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0191437_26	1226322.HMPREF1545_00077	176.0	0	N/A	N/A
structural_annotation	UHGV-0191437_26	PF18573,NF033147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0191437_27	476272.RUMHYD_01772	57.8	0.0000000179	N/A	N/A
structural_annotation	UHGV-0191437_27	PF12510	N/A	N/A	N/A	N/A
KOfam	UHGV-0191437_29	K14059	118.4	1.1e-34	int; integrase	N/A
PHROG	UHGV-0191437_29	phrog_1	106.2	3.8e-31	integrase	integration and excision
UniRef90	UHGV-0191437_29	UniRef90_UPI00130DFBFE	741.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0191437_29	748224.HMPREF9436_03382	629.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0191437_29	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0191437_29	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0191437_29	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0191437_29	PF00589,PF14659,MF_01808,NF007246,COG4973	N/A	N/A	N/A	N/A
UniRef90	UHGV-0191437_30	UniRef90_A0A6N7TLT0	204.0	0	Helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0191437_30	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0191437_30	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0191437_33	phrog_888	65.4	1.3e-35	N/A	unknown function
UniRef90	UHGV-0191437_33	UniRef90_A0A6N7TMA2	416.0	0	SHOCT domain-containing protein	N/A
eggNOG-mapper	UHGV-0191437_33	1151292.QEW_1347	80.5	0.00000000000000265	Short C-terminal domain	N/A
Pfam	UHGV-0191437_33	PF14471	N/A	N/A	N/A	DUF4428
Pfam	UHGV-0191437_33	PF09851	N/A	N/A	Short C-terminal domain	SHOCT
structural_annotation	UHGV-0191437_33	PF15947,PF14471	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0191437_35	PF09202,MF_01819,NF041230,COG1321	N/A	N/A	N/A	N/A
Pfam	UHGV-0191437_36	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0191437_36	PF01381,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0191437_37	phrog_8	46.4	0.00000000000089	transcriptional regulator	transcription regulation
UniRef90	UHGV-0191437_37	UniRef90_UPI001C009F10	124.0	6.52e-36	helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-0191437_37	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0191437_37	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0191437_37	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0191437_40	K07741	94.7	2.3e-27	antB; anti-repressor protein	N/A
PHROG	UHGV-0191437_40	phrog_63	190.8	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0191437_40	UniRef90_A0A844D5R9	451.0	0	Phage regulatory protein/antirepressor Ant	N/A
eggNOG-mapper	UHGV-0191437_40	1423816.BACQ01000027_gene970	245.0	0	Phage regulatory protein Rha (Phage_pRha)	N/A
Pfam	UHGV-0191437_40	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
Pfam	UHGV-0191437_40	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
NCBIFam	UHGV-0191437_40	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-0191437_40	COG3645	N/A	N/A	Phage antirepressor protein YoqD, KilAC domain	N/A
structural_annotation	UHGV-0191437_40	PF03374,PF09669,TIGR02681,COG3645,COG3561	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0191437_41	760568.Desku_0919	101.0	8.85e-24	N/A	N/A
structural_annotation	UHGV-0191437_41	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
UniRef90	UHGV-0191437_42	UniRef90_UPI00130EBC54	142.0	8.25365e-43	N/A	N/A
eggNOG-mapper	UHGV-0191437_42	445972.ANACOL_01800	49.7	0.000000686	N/A	N/A
COG	UHGV-0191437_42	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0191437_42	PF05339,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0191437_43	PF12270,NF040944	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0191437_44	PF09537	N/A	N/A	N/A	N/A
PHROG	UHGV-0191437_45	phrog_674	145.0	5.10073e-43	N/A	unknown function
UniRef90	UHGV-0191437_45	UniRef90_A0A3E2UDL3	361.0	0	N/A	N/A
eggNOG-mapper	UHGV-0191437_45	742722.HMPREF9463_00201	83.2	0.00000000000000254	N/A	N/A
Pfam	UHGV-0191437_45	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0191437_45	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-0191437_46	phrog_2760	184.2	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0191437_46	UniRef90_A0A3E2UDI4	410.0	0	Phage recombination protein Bet	N/A
eggNOG-mapper	UHGV-0191437_46	1235794.C811_01355	153.0	4.62008e-42	RecT family	N/A
Pfam	UHGV-0191437_46	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0191437_46	TIGR01913.1	N/A	N/A	phage recombination protein Bet	N/A
COG	UHGV-0191437_46	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0191437_46	PF03837,TIGR01913,COG3723	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0191437_47	PF00436,MF_00720,NF004512,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0191437_48	K02086	53.1	0.000000000000003	dnaD; DNA replication protein	N/A
PHROG	UHGV-0191437_48	phrog_6251	154.7	0	replisome organizer DnaA-like	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0191437_48	UniRef90_UPI001CBE9731	191.0	0	DnaD domain protein	N/A
eggNOG-mapper	UHGV-0191437_48	447909.A6M985_9VIRU	152.0	1.27995e-41	calcium ion binding	N/A
Pfam	UHGV-0191437_48	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-0191437_48	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
structural_annotation	UHGV-0191437_48	PF09524,PF04492,TIGR02220,TIGR01714	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0191437_49	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-0191437_52	phrog_424	91.2	1.1e-26	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
eggNOG-mapper	UHGV-0191437_52	445972.ANACOL_01819	441.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
COG	UHGV-0191437_52	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0191437_52	PF01507,MF_00064,TIGR00434,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0191437_53	phrog_3136	111.9	2e-33	N/A	unknown function
UniRef90	UHGV-0191437_53	UniRef90_A0A6N7TMC2	160.0	0	ASCH domain-containing protein	N/A
COG	UHGV-0191437_53	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0191437_53	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
KOfam	UHGV-0191437_54	K01160	59.5	9.7e-17	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0191437_54	phrog_34	58.8	1e-16	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0191437_54	UniRef90_A0A844DBG8	236.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0191437_54	875454.BAEW01000002_gene491	132.0	3.08e-38	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0191437_54	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0191437_54	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0191437_54	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0191437_56	phrog_36	51.2	0.000000000000022	transcriptional regulator	transcription regulation
structural_annotation	UHGV-0191437_56	PF07374,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-0191437_57	K06909	346.9	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0191437_57	phrog_3717	144.2	6.60012e-43	terminase large subunit	head and packaging
UniRef90	UHGV-0191437_57	UniRef90_A0A4R1QRJ0	477.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0191437_57	665956.HMPREF1032_02957	451.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0191437_57	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
Pfam	UHGV-0191437_57	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0191437_57	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0191437_57	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0191437_57	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0191437_57	PF04466,PF16677,PF17289,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0191437_58	phrog_15471	150.5	7.00649e-45	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0191437_58	UniRef90_UPI0009471AF7	162.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0191437_58	1235800.C819_00490	132.0	2.63e-36	HNH endonuclease	N/A
Pfam	UHGV-0191437_58	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-0191437_58	PF13392,PF10013,COG4068	N/A	N/A	N/A	N/A
PHROG	UHGV-0191437_59	phrog_64	125.0	2.1e-37	portal protein	head and packaging
UniRef90	UHGV-0191437_59	UniRef90_A0A6N7TNT3	501.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0191437_59	673376.F2VHW1_9CAUD	165.0	3.40516e-43	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0191437_59	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0191437_59	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0191437_61	phrog_2468	79.8	1.3e-23	head morphogenesis	head and packaging
UniRef90	UHGV-0191437_61	UniRef90_A0A844DBI4	600.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0191437_61	1504822.CCNO01000013_gene286	128.0	8.78e-30	cell adhesion	N/A
Pfam	UHGV-0191437_61	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0191437_61	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0191437_61	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0191437_62	phrog_5	52.1	0.000000000000016	tail completion or Neck1 protein	connector
UniRef90	UHGV-0191437_62	UniRef90_A0A844DDB3	293.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0191437_62	1123309.AQYB01000018_gene814	91.3	1.59e-21	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0191437_62	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0191437_62	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0191437_64	PF06810	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0191437_65	476272.RUMHYD_01776	75.1	0.0000000000000017	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0191437	Yes	43,305	54	100	1
UHGV-0172175	No	25,677	55	62	1