vOTU vOTU-047327

vOTU: vOTU-047327

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-047327
Number of genomes	5
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_C
Taxonomy (UHGV)	vFAM-00060 → vSUBFAM-02806 → vGENUS-09254 → vSUBGEN-10553 → vOTU-047327
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_C
Host range breadth	Genus
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0195828
Biosample ID	N/A
Genome length (bp)	29,672 bps
CheckV completeness	100.00% (Complete)
CDS count	45
CDS density	93.49%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_C	Total connections	50	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_C	Total connections	255	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0195828_1	K07273	182.4	0	acm; lysozyme	N/A
PHROG	UHGV-0195828_1	phrog_291	137.1	1.2e-40	endolysin	lysis
UniRef90	UHGV-0195828_1	UniRef90_U2K8D9	635.0	0	Glycosyl hydrolase family 25	N/A
eggNOG-mapper	UHGV-0195828_1	411473.RUMCAL_01945	635.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0195828_1	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
Pfam	UHGV-0195828_1	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0195828_1	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0195828_1	PF01183,PF08291,NF007557,COG3757,COG3108	N/A	N/A	N/A	N/A
PHROG	UHGV-0195828_2	phrog_1129	69.0	4.7e-20	holin	lysis
UniRef90	UHGV-0195828_2	UniRef90_A0A416MDZ9	121.0	2.61e-34	Enolase	N/A
eggNOG-mapper	UHGV-0195828_2	411473.RUMCAL_01944	166.0	0	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0195828_2	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0195828_2	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0195828_4	phrog_35590	346.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0195828_4	411473.RUMCAL_00613	120.0	3.79e-29	Collagen triple helix repeat (20 copies)	N/A
COG	UHGV-0195828_4	COG2931	N/A	N/A	Ca2+-binding protein, RTX toxin-related	N/A
structural_annotation	UHGV-0195828_4	PF07675,NF038128	N/A	N/A	N/A	N/A
KOfam	UHGV-0195828_5	K08131	90.0	1e-26	COL9A; collagen type IX alpha	N/A
PHROG	UHGV-0195828_5	phrog_25888	517.9	0	N/A	unknown function
UniRef90	UHGV-0195828_5	UniRef90_U2KR58	601.0	0	Collagen triple helix repeat protein	N/A
eggNOG-mapper	UHGV-0195828_5	411473.RUMCAL_01941	601.0	0	cell adhesion	N/A
Pfam	UHGV-0195828_5	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0195828_5	COG3468	N/A	N/A	Autotransporter adhesin AidA	N/A
structural_annotation	UHGV-0195828_5	PF10651	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0195828_6	PF14594,TIGR03361,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0195828_8	phrog_1272	366.7	0	tail length tape measure protein	tail
UniRef90	UHGV-0195828_8	UniRef90_R7FII5	924.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0195828_8	411473.RUMCAL_01938	926.0	0	tail tape measure protein, TP901	N/A
Pfam	UHGV-0195828_8	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-0195828_8	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0195828_8	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0195828_9	phrog_706	164.6	0	N/A	unknown function
UniRef90	UHGV-0195828_9	UniRef90_B0NG03	145.0	8.60005e-41	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0195828_9	411473.RUMCAL_01937	375.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0195828_9	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0195828_9	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0195828_10	phrog_4450	104.9	6e-31	N/A	unknown function
UniRef90	UHGV-0195828_10	UniRef90_A0A355D9Y6	52.8	0.00000202	AP endonuclease	N/A
eggNOG-mapper	UHGV-0195828_10	641112.ACOK01000073_gene2902	90.9	7.78e-22	N/A	N/A
Pfam	UHGV-0195828_10	PF20378	N/A	N/A	N/A	DUF6673
structural_annotation	UHGV-0195828_10	PF20378	N/A	N/A	N/A	N/A
PHROG	UHGV-0195828_11	phrog_3099	189.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0195828_11	411473.RUMCAL_01935	483.0	0	N/A	N/A
structural_annotation	UHGV-0195828_11	PF08813,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0195828_12	phrog_3266	169.5	0	tail completion	connector
UniRef90	UHGV-0195828_12	UniRef90_A0A355UZ60	170.0	0	Chloramphenicol resistance protein	N/A
eggNOG-mapper	UHGV-0195828_12	411473.RUMCAL_01934	307.0	0	N/A	N/A
structural_annotation	UHGV-0195828_12	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0195828_13	phrog_556	90.0	2e-26	minor head protein	head and packaging
UniRef90	UHGV-0195828_13	UniRef90_T3DSR7	75.9	0.00000000000000179	Minor capsid family protein	N/A
eggNOG-mapper	UHGV-0195828_13	1151292.QEW_4532	75.9	3e-16	Minor capsid protein	N/A
Pfam	UHGV-0195828_13	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0195828_13	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0195828_14	phrog_3366	60.4	2.8e-18	N/A	unknown function
eggNOG-mapper	UHGV-0195828_14	411473.RUMCAL_01932	221.0	0	N/A	N/A
structural_annotation	UHGV-0195828_14	PF20536,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0195828_15	phrog_541	100.7	9.8e-30	head-tail adaptor	connector
eggNOG-mapper	UHGV-0195828_15	641112.ACOK01000073_gene2896	104.0	8.21e-27	N/A	N/A
PHROG	UHGV-0195828_16	phrog_267	92.4	5.1e-27	major head protein	head and packaging
UniRef90	UHGV-0195828_16	UniRef90_A0A4P8IA69	365.0	0	Phage capsid and scaffold	N/A
eggNOG-mapper	UHGV-0195828_16	411473.RUMCAL_01930	533.0	0	N/A	N/A
structural_annotation	UHGV-0195828_16	PF11651,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0195828_17	phrog_194	59.4	7.8e-17	head scaffolding protein	head and packaging
UniRef90	UHGV-0195828_17	UniRef90_R7FEY9	326.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0195828_17	411473.RUMCAL_01929	326.0	0	Phage minor structural protein GP20	N/A
Pfam	UHGV-0195828_17	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0195828_17	PF06810,MF_02110	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0195828_19	PF12305	N/A	N/A	N/A	N/A
PHROG	UHGV-0195828_20	phrog_581	321.7	0	minor head protein	head and packaging
UniRef90	UHGV-0195828_20	UniRef90_U2K8C2	736.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0195828_20	411473.RUMCAL_01925	736.0	0	N/A	N/A
Pfam	UHGV-0195828_20	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0195828_20	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0195828_20	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0195828_21	phrog_533	329.4	0	portal protein	head and packaging
UniRef90	UHGV-0195828_21	UniRef90_U2KRP5	855.0	0	Putative phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0195828_21	411473.RUMCAL_01924	855.0	0	N/A	N/A
structural_annotation	UHGV-0195828_21	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0195828_22	K06909	144.6	7.90332e-43	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0195828_22	phrog_10250	160.9	0	N/A	unknown function
UniRef90	UHGV-0195828_22	UniRef90_U2LZ34	865.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-0195828_22	411473.RUMCAL_01923	865.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0195828_22	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0195828_22	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0195828_22	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0195828_22	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-0195828_23	UniRef90_W0U9H3	56.2	0.000000167	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-0195828_23	411473.RUMCAL_01921	214.0	0	N/A	N/A
KOfam	UHGV-0195828_24	K02601	57.0	3.2e-16	nusG; transcription termination/antitermination protein NusG	N/A
PHROG	UHGV-0195828_24	phrog_6386	128.9	2.9e-38	transcription antiterminator	transcription regulation
UniRef90	UHGV-0195828_24	UniRef90_U2K8B7	330.0	0	Transcription termination/antitermination factor NusG	N/A
eggNOG-mapper	UHGV-0195828_24	411473.RUMCAL_01920	330.0	0	Transcription termination factor nusG	N/A
Pfam	UHGV-0195828_24	PF02357	N/A	N/A	Transcription termination factor nusG	NusG
COG	UHGV-0195828_24	COG0250	N/A	N/A	Transcription termination/antitermination protein NusG	N/A
structural_annotation	UHGV-0195828_24	PF02357,MF_00951,NF033641,COG0250	N/A	N/A	N/A	N/A
PHROG	UHGV-0195828_25	phrog_426	105.0	9e-31	terminase small subunit	head and packaging
UniRef90	UHGV-0195828_25	UniRef90_UPI001D05DC57	176.0	0	N/A	N/A
eggNOG-mapper	UHGV-0195828_25	411473.RUMCAL_01919	350.0	0	N/A	N/A
Pfam	UHGV-0195828_25	PF11985	N/A	N/A	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
structural_annotation	UHGV-0195828_25	PF11985	N/A	N/A	N/A	N/A
PHROG	UHGV-0195828_26	phrog_25462	179.6	0	N/A	unknown function
UniRef90	UHGV-0195828_26	UniRef90_A0A3C0QMV8	143.0	2.40042e-42	Type VI secretion protein	N/A
eggNOG-mapper	UHGV-0195828_26	411473.RUMCAL_01918	196.0	0	N/A	N/A
structural_annotation	UHGV-0195828_26	PF01638,MF_01819,NF002926,COG1733	N/A	N/A	N/A	N/A
PHROG	UHGV-0195828_27	phrog_462	63.2	2.3e-18	lipoprotein	other
eggNOG-mapper	UHGV-0195828_27	411473.RUMCAL_01917	193.0	0	N/A	N/A
PHROG	UHGV-0195828_28	phrog_532	70.7	2.2e-20	late transcriptional activator	transcription regulation
UniRef90	UHGV-0195828_28	UniRef90_U2KR36	187.0	0	Mor transcription activator family protein	N/A
eggNOG-mapper	UHGV-0195828_28	411473.RUMCAL_01916	187.0	0	Mor transcription activator	N/A
Pfam	UHGV-0195828_28	PF08765	N/A	N/A	Mor transcription activator family	Mor
COG	UHGV-0195828_28	COG5566	N/A	N/A	Transcriptional regulator, middle operon regulator (Mor) family	N/A
structural_annotation	UHGV-0195828_28	PF08765,NF040785,COG5566	N/A	N/A	N/A	N/A
PHROG	UHGV-0195828_29	phrog_286	76.9	3.4e-22	N/A	unknown function
UniRef90	UHGV-0195828_29	UniRef90_A0A373KYV3	108.0	4.98e-27	N/A	N/A
eggNOG-mapper	UHGV-0195828_29	411473.RUMCAL_01915	294.0	0	N/A	N/A
Pfam	UHGV-0195828_29	PF06252	N/A	N/A	Bacteriophage Mu, GemA protein	GemA
structural_annotation	UHGV-0195828_29	PF06252	N/A	N/A	N/A	N/A
KOfam	UHGV-0195828_30	K02315	118.2	8.7e-35	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0195828_30	phrog_50	135.1	5.5e-40	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0195828_30	UniRef90_U2KRN6	482.0	0	IstB_IS21 domain-containing protein	N/A
eggNOG-mapper	UHGV-0195828_30	411473.RUMCAL_01914	482.0	0	N/A	N/A
Pfam	UHGV-0195828_30	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-0195828_30	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0195828_30	PF01695,MF_01158,NF005378,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-0195828_31	phrog_270	80.2	4e-23	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0195828_31	UniRef90_UPI000FF705BB	68.6	0.00000000000447	phage replication protein	N/A
eggNOG-mapper	UHGV-0195828_31	411473.RUMCAL_01913	189.0	0	HNH endonuclease	N/A
COG	UHGV-0195828_31	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0195828_32	phrog_5671	136.2	1.3e-40	N/A	unknown function
eggNOG-mapper	UHGV-0195828_32	411473.RUMCAL_01912	251.0	0	N/A	N/A
PHROG	UHGV-0195828_33	phrog_6244	89.1	5.7e-26	N/A	unknown function
eggNOG-mapper	UHGV-0195828_33	1232453.BAIF02000002_gene1275	80.9	1.01e-18	YqaJ viral recombinase family	N/A
COG	UHGV-0195828_33	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
PHROG	UHGV-0195828_34	phrog_4292	91.1	5.3e-27	N/A	unknown function
UniRef90	UHGV-0195828_34	UniRef90_A0A7G3VS96	53.1	0.0000000397	Putative NHN endonuclease	N/A
eggNOG-mapper	UHGV-0195828_34	411473.RUMCAL_01910	115.0	1.45e-33	N/A	N/A
KOfam	UHGV-0195828_35	K07132	68.8	7.6e-20	MuB; ATP-dependent target DNA activator	N/A
PHROG	UHGV-0195828_35	phrog_296	142.9	2.7003e-42	DNA transposition protein	integration and excision
UniRef90	UHGV-0195828_35	UniRef90_R7FFF2	575.0	0	AAA domain protein	N/A
eggNOG-mapper	UHGV-0195828_35	411473.RUMCAL_01909	575.0	0	AAA domain	N/A
Pfam	UHGV-0195828_35	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0195828_35	PF13401	N/A	N/A	AAA domain	AAA_22
COG	UHGV-0195828_35	COG2842	N/A	N/A	Bacteriophage DNA transposition protein, AAA+ family ATPase	N/A
structural_annotation	UHGV-0195828_35	PF13401,MF_01407,TIGR03015,COG2842	N/A	N/A	N/A	N/A
PHROG	UHGV-0195828_36	phrog_310	368.4	0	transposase	integration and excision
UniRef90	UHGV-0195828_36	UniRef90_U2LZ18	1183.0	0	Integrase catalytic domain-containing protein	N/A
eggNOG-mapper	UHGV-0195828_36	411473.RUMCAL_01908	1183.0	0	Mu transposase, C-terminal	N/A
PADLOC	UHGV-0195828_36	TnsB_0_V-K	62.7	3.9e-18	TnsB_0_V-K	CRISPR-CAS
Pfam	UHGV-0195828_36	PF09039	N/A	N/A	Mu DNA binding, I gamma subdomain	HTH_Tnp_Mu_2
Pfam	UHGV-0195828_36	PF00665	N/A	N/A	Integrase core domain	rve
Pfam	UHGV-0195828_36	PF09299	N/A	N/A	Mu transposase, C-terminal	Mu-transpos_C
COG	UHGV-0195828_36	COG2801	N/A	N/A	Transposase InsO and inactivated derivatives	N/A
structural_annotation	UHGV-0195828_36	PF02914,PF09039,PF09299,PF21531,NF033594,TIGR01764,COG3316,COG3311	N/A	N/A	N/A	N/A
KOfam	UHGV-0195828_40	K23779	57.3	3.9e-16	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
PHROG	UHGV-0195828_40	phrog_5823	46.5	0.00000000000049	transcriptional regulator	transcription regulation
UniRef90	UHGV-0195828_40	UniRef90_U2K8A4	149.0	1.4013e-45	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0195828_40	596154.Alide2_1081	47.8	0.00000356	Helix-turn-helix domain	N/A
PADLOC	UHGV-0195828_40	retron_type_VI_hth_cluster2_1	51.6	0.000000000000027	N/A	Retron
Pfam	UHGV-0195828_40	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0195828_40	COG3620	N/A	N/A	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	N/A
UniRef90	UHGV-0195828_45	UniRef90_R7FFE5	254.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0195828_45	1160721.RBI_II00559	92.8	2.44e-21	Peptidase S24-like	N/A
Pfam	UHGV-0195828_45	PF07022	N/A	N/A	Bacteriophage CI repressor helix-turn-helix domain	Phage_CI_repr
COG	UHGV-0195828_45	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0195828_45	PF12844,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0195828	Yes	29,672	52	100	1
UHGV-0105135	No	32,079	52	89	1
UHGV-1344369	No	30,619	52	87	1
UHGV-1340306	No	18,161	53	50	1
UHGV-0101223	No	14,772	53	41	1