vOTU vOTU-047361

vOTU: vOTU-047361

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-047361
Number of genomes	2
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger variabilis_A
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00013 → vGENUS-13389 → vSUBGEN-21445 → vOTU-047361
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0196943
Biosample ID	SAMN09781748
Genome length (bp)	39,783 bps
CheckV completeness	100.00% (Complete)
CDS count	63
CDS density	90.78%
tRNA count	3
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	539	Host agreement	98.52
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger variabilis_A	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0196943_1	phrog_36	40.8	0.000000000037	transcriptional regulator	transcription regulation
structural_annotation	UHGV-0196943_1	PF07374,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
UniRef90	UHGV-0196943_2	UniRef90_UPI0018CC2891	119.0	1.28e-31	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0196943_2	1235790.C805_00037	111.0	3.67e-29	N/A	N/A
structural_annotation	UHGV-0196943_2	PF04218	N/A	N/A	N/A	N/A
KOfam	UHGV-0196943_3	K06909	139.8	2.4e-41	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0196943_3	phrog_10250	173.8	0	N/A	unknown function
UniRef90	UHGV-0196943_3	UniRef90_A0A844D8I4	837.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0196943_3	411490.ANACAC_00783	490.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0196943_3	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-0196943_3	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0196943_3	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0196943_3	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0196943_3	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0196943_4	phrog_64	125.7	1.6e-37	portal protein	head and packaging
UniRef90	UHGV-0196943_4	UniRef90_A0A6N7TNT3	853.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0196943_4	642492.Clole_2764	78.2	0.00000000000132	phage portal protein, SPP1	N/A
Pfam	UHGV-0196943_4	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0196943_4	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0196943_6	phrog_2468	78.4	7.8e-23	head morphogenesis	head and packaging
UniRef90	UHGV-0196943_6	UniRef90_A0A6N7TLR7	639.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0196943_6	1504822.CCNO01000013_gene286	115.0	2.12e-25	cell adhesion	N/A
Pfam	UHGV-0196943_6	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0196943_6	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0196943_6	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0196943_7	phrog_21498	296.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0196943_7	78346.BRUM_0376	267.0	0	DNA binding	N/A
COG	UHGV-0196943_7	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0196943_7	PF05869,TIGR01712	N/A	N/A	N/A	N/A
PHROG	UHGV-0196943_8	phrog_5	41.4	0.000000000031	tail completion or Neck1 protein	connector
UniRef90	UHGV-0196943_8	UniRef90_A0A6N7TNP6	280.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0196943_8	268407.PWYN_03010	68.9	0.000000000000827	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0196943_8	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0196943_8	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0196943_10	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0196943_11	phrog_544	114.0	1.4e-33	major head protein	head and packaging
UniRef90	UHGV-0196943_11	UniRef90_A0A1C6B5R0	330.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0196943_11	476272.RUMHYD_01776	293.0	0	N/A	N/A
structural_annotation	UHGV-0196943_11	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0196943_13	phrog_17977	42.5	0.0000000000091	N/A	unknown function
UniRef90	UHGV-0196943_13	UniRef90_A0A844DHJ8	119.0	2.31e-32	Phage head closure protein	N/A
structural_annotation	UHGV-0196943_13	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0196943_14	PF13554	N/A	N/A	N/A	N/A
PHROG	UHGV-0196943_15	phrog_885	66.9	2.2e-19	major tail protein	tail
eggNOG-mapper	UHGV-0196943_15	1111121.HMPREF1247_0789	173.0	0	N/A	N/A
structural_annotation	UHGV-0196943_15	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0196943_18	phrog_1686	96.3	2.5e-28	tail length tape measure protein	tail
UniRef90	UHGV-0196943_18	UniRef90_A0A6N7TLD3	1152.0	0	Tape measure protein	N/A
eggNOG-mapper	UHGV-0196943_18	1492737.FEM08_12070	147.0	4.24e-34	tape measure	N/A
Pfam	UHGV-0196943_18	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0196943_18	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0196943_18	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0196943_18	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
UniRef90	UHGV-0196943_19	UniRef90_A0A417QGC1	113.0	4.76e-27	MtfA protein	N/A
eggNOG-mapper	UHGV-0196943_19	1235792.C808_00094	94.7	1.53e-20	phage tail	N/A
COG	UHGV-0196943_19	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0196943_19	PF05709,PF02408,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0196943_20	phrog_3558	187.0	0	tail protein	tail
eggNOG-mapper	UHGV-0196943_20	1304866.K413DRAFT_1236	69.7	0.00000000128	Phage minor structural protein, N-terminal	N/A
Pfam	UHGV-0196943_20	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
COG	UHGV-0196943_20	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0196943_20	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0196943_21	phrog_9534	62.9	9.7e-21	head protein	head and packaging
eggNOG-mapper	UHGV-0196943_21	748224.HMPREF9436_00702	162.0	5.60519e-45	COG NOG18825 non supervised orthologous group	N/A
PHROG	UHGV-0196943_23	phrog_1382	56.7	2.2e-16	N/A	unknown function
eggNOG-mapper	UHGV-0196943_23	33035.JPJF01000043_gene998	45.4	0.00000552	N/A	N/A
KOfam	UHGV-0196943_24	K07273	175.5	0	acm; lysozyme	N/A
PHROG	UHGV-0196943_24	phrog_291	146.8	1.59748e-43	endolysin	lysis
UniRef90	UHGV-0196943_24	UniRef90_E2ZES5	347.0	0	Glycosyl hydrolase family 25	N/A
eggNOG-mapper	UHGV-0196943_24	748224.HMPREF9436_00154	347.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0196943_24	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0196943_24	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0196943_24	PF01183,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0196943_26	phrog_15303	113.7	7.9e-34	N/A	unknown function
Pfam	UHGV-0196943_26	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
structural_annotation	UHGV-0196943_28	PF07374,MF_00245,NF001072,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0196943_29	phrog_3754	95.7	4.3e-28	N/A	unknown function
eggNOG-mapper	UHGV-0196943_29	1235790.C805_00054	109.0	3.71e-29	N/A	N/A
PHROG	UHGV-0196943_30	phrog_21718	122.0	3.6e-36	N/A	unknown function
eggNOG-mapper	UHGV-0196943_30	397290.C810_05210	100.0	1.5e-24	N/A	N/A
PHROG	UHGV-0196943_31	phrog_22984	85.0	5.2e-25	N/A	unknown function
PHROG	UHGV-0196943_32	phrog_16490	137.1	5.70006e-41	N/A	unknown function
eggNOG-mapper	UHGV-0196943_32	1408437.JNJN01000043_gene803	132.0	3.98e-35	N/A	N/A
PHROG	UHGV-0196943_33	phrog_20016	195.0	0	N/A	unknown function
UniRef90	UHGV-0196943_33	UniRef90_A0A285PT46	216.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0196943_33	1226322.HMPREF1545_00077	185.0	0	N/A	N/A
structural_annotation	UHGV-0196943_33	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0196943_34	PF12510	N/A	N/A	N/A	N/A
KOfam	UHGV-0196943_36	K14059	143.9	1.69978e-42	int; integrase	N/A
PHROG	UHGV-0196943_36	phrog_1	169.4	0	integrase	integration and excision
UniRef90	UHGV-0196943_36	UniRef90_A0A6N7TNQ4	736.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0196943_36	411471.SUBVAR_05137	264.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0196943_36	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0196943_36	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0196943_36	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0196943_37	K15773	41.7	0.000000000021	hipB; HTH-type transcriptional regulator / antitoxin HipB	N/A
UniRef90	UHGV-0196943_37	UniRef90_A0A6N7TLT0	384.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0196943_37	266265.Bxe_A3948	52.8	0.000000675	Helix-turn-helix domain	N/A
Pfam	UHGV-0196943_37	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0196943_37	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0196943_37	PF13560,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0196943_40	1123037.AUDE01000011_gene922	96.7	1.76e-20	N/A	N/A
structural_annotation	UHGV-0196943_40	COG5342	N/A	N/A	N/A	N/A
UniRef90	UHGV-0196943_42	UniRef90_A0A1V0QCF9	81.6	1.03e-17	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0196943_42	1226322.HMPREF1545_00148	82.0	1.51e-18	Transcriptional	N/A
Pfam	UHGV-0196943_42	PF08667	N/A	N/A	BetR domain	BetR
COG	UHGV-0196943_42	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0196943_42	PF01381,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0196943_43	UniRef90_A0A1C7FQD9	74.3	4.97e-16	Transcriptional regulator	N/A
structural_annotation	UHGV-0196943_43	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0196943_46	phrog_373	135.4	4.2e-40	anti-repressor	transcription regulation
UniRef90	UHGV-0196943_46	UniRef90_UPI001CBC74BC	337.0	0	Rha family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0196943_46	536232.CLM_2682	151.0	8.34053e-42	AntA/AntB antirepressor	N/A
Pfam	UHGV-0196943_46	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
NCBIFam	UHGV-0196943_46	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-0196943_46	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-0196943_46	PF09669,TIGR02681,COG3646	N/A	N/A	N/A	N/A
KOfam	UHGV-0196943_47	K17080	78.9	2.1e-23	PHB1; prohibitin 1	N/A
PHROG	UHGV-0196943_47	phrog_200	158.1	0	lipoprotein	other
UniRef90	UHGV-0196943_47	UniRef90_D4KCF4	382.0	0	Membrane protease subunits, stomatin/prohibitin homologs	N/A
eggNOG-mapper	UHGV-0196943_47	657322.FPR_23460	382.0	0	prohibitin homologues	N/A
Pfam	UHGV-0196943_47	PF01145	N/A	N/A	SPFH domain / Band 7 family	Band_7
COG	UHGV-0196943_47	COG0330	N/A	N/A	Regulator of protease activity HflC, stomatin/prohibitin superfamily	N/A
structural_annotation	UHGV-0196943_47	PF01145,MF_01562,NF008181,COG0330	N/A	N/A	N/A	N/A
PHROG	UHGV-0196943_49	phrog_4433	123.3	2e-36	N/A	unknown function
UniRef90	UHGV-0196943_49	UniRef90_A0A6M5C839	102.0	2.87e-24	Putative ADP-ribosyltransferase	N/A
eggNOG-mapper	UHGV-0196943_49	33035.JPJF01000122_gene2458	105.0	8.06e-25	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0196943_49	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0196943_50	PF10743,NF033787	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0196943_51	PF12270,NF040944	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0196943_54	PF14120	N/A	N/A	N/A	N/A
PHROG	UHGV-0196943_55	phrog_674	155.3	0	N/A	unknown function
UniRef90	UHGV-0196943_55	UniRef90_A0A3A6E846	489.0	0	N/A	N/A
eggNOG-mapper	UHGV-0196943_55	556268.OFAG_00840	89.0	1.09e-17	N/A	N/A
Pfam	UHGV-0196943_55	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0196943_55	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-0196943_56	phrog_2760	186.2	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0196943_56	UniRef90_A0A3A6EAW6	452.0	0	Phage recombination protein Bet	N/A
eggNOG-mapper	UHGV-0196943_56	1235794.C811_01355	152.0	8.49047e-42	RecT family	N/A
Pfam	UHGV-0196943_56	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0196943_56	TIGR01913.1	N/A	N/A	phage recombination protein Bet	N/A
COG	UHGV-0196943_56	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0196943_56	PF03837,TIGR01913,COG3723	N/A	N/A	N/A	N/A
UniRef90	UHGV-0196943_57	UniRef90_UPI001CBB85F6	115.0	2.71e-29	single-stranded DNA-binding protein	N/A
COG	UHGV-0196943_57	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0196943_57	PF00436,MF_00720,NF004512,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0196943_58	K02086	63.0	2.6e-18	dnaD; DNA replication protein	N/A
PHROG	UHGV-0196943_58	phrog_186	70.7	2.4e-20	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0196943_58	UniRef90_A0A6N7TLH4	421.0	0	DnaD domain protein	N/A
eggNOG-mapper	UHGV-0196943_58	877411.JMMA01000002_gene2052	63.2	0.00000000702	N/A	N/A
Pfam	UHGV-0196943_58	PF19808	N/A	N/A	N/A	DUF6291
Pfam	UHGV-0196943_58	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-0196943_58	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
structural_annotation	UHGV-0196943_58	PF19808,PF07261,TIGR01446,COG3935	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0196943_59	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-0196943_61	phrog_757	172.9	0	DNA methyltransferase	other
UniRef90	UHGV-0196943_61	UniRef90_UPI001C00B13F	443.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0196943_61	748224.HMPREF9436_03069	326.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0196943_61	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0196943_61	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0196943_62	phrog_3136	117.6	4.5e-35	N/A	unknown function
UniRef90	UHGV-0196943_62	UniRef90_UPI001C26B029	207.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0196943_62	97139.C824_00742	61.2	0.00000000282	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0196943_62	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0196943_62	PF04266,MF_00684,NF003443,COG4933	N/A	N/A	N/A	N/A
KOfam	UHGV-0196943_63	K03700	91.6	1.2e-26	recU; recombination protein U	N/A
PHROG	UHGV-0196943_63	phrog_843	160.7	0	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0196943_63	UniRef90_A0A1C5P0D5	348.0	0	Holliday junction resolvase RecU	N/A
eggNOG-mapper	UHGV-0196943_63	748224.HMPREF9436_03347	340.0	0	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	N/A
Pfam	UHGV-0196943_63	PF03838	N/A	N/A	Recombination protein U	RecU
COG	UHGV-0196943_63	COG3331	N/A	N/A	Penicillin-binding protein-related factor A, putative recombinase	N/A
structural_annotation	UHGV-0196943_63	PF03838,MF_00130,NF002581,COG3331	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0196943	Yes	39,783	55	100	1
UHGV-0177937	No	36,588	55	86	1