vOTU vOTU-047454

vOTU: vOTU-047454

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-047454
Number of genomes	13
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00027 → vSUBFAM-00190 → vGENUS-01600 → vSUBGEN-00932 → vOTU-047454
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Dorea_A → Dorea_A longicatena
Host range breadth	Species
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0199394
Biosample ID	SAMN06164954
Genome length (bp)	45,848 bps
CheckV completeness	100.00% (Complete)
CDS count	76
CDS density	89.04%
tRNA count	2
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Dorea_A → Dorea_A longicatena	Total connections	617	Host agreement	81.85
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0199394_1	phrog_6280	98.5	5.6e-29	N/A	unknown function
UniRef90	UHGV-0199394_1	UniRef90_A0A8J6PH67	87.0	2.48e-19	Esterase	N/A
eggNOG-mapper	UHGV-0199394_1	1443125.Z962_12410	82.4	3.42e-18	N/A	N/A
PHROG	UHGV-0199394_2	phrog_1533	514.3	0	tail length tape measure protein	tail
UniRef90	UHGV-0199394_2	UniRef90_A0A7U9JT69	477.0	0	Phage tail tape measure protein, TP901 family	N/A
eggNOG-mapper	UHGV-0199394_2	1304866.K413DRAFT_1234	477.0	0	tail tape measure protein	N/A
Pfam	UHGV-0199394_2	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0199394_2	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0199394_2	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0199394_2	PF10145,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0199394_3	phrog_36410	56.3	6.2e-16	N/A	unknown function
eggNOG-mapper	UHGV-0199394_3	706433.HMPREF9430_01256	59.7	0.000000239	Phage tail protein	N/A
structural_annotation	UHGV-0199394_3	PF20753,PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0199394_4	phrog_538	111.5	5.7e-33	minor tail protein	tail
UniRef90	UHGV-0199394_4	UniRef90_A0A843GTT7	127.0	9.81e-29	Siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-0199394_4	1321782.HMPREF1986_02278	92.4	1.75e-17	N/A	N/A
Pfam	UHGV-0199394_4	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
PHROG	UHGV-0199394_5	phrog_1220	170.0	0	head protein	head and packaging
UniRef90	UHGV-0199394_5	UniRef90_A0A6B3YJZ4	117.0	6.76e-28	Phage tail protein (Fragment)	N/A
eggNOG-mapper	UHGV-0199394_5	999411.HMPREF1092_00929	105.0	1.99e-23	COG NOG18825 non supervised orthologous group	N/A
structural_annotation	UHGV-0199394_5	PF20747	N/A	N/A	N/A	N/A
UniRef90	UHGV-0199394_6	UniRef90_R6M754	110.0	2.7e-24	Leucine-rich repeat (LRR) protein	N/A
eggNOG-mapper	UHGV-0199394_6	1688.BCUN_1858	93.6	1.63e-18	Listeria-Bacteroides repeat domain (List_Bact_rpt)	N/A
Pfam	UHGV-0199394_6	PF09479	N/A	N/A	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
structural_annotation	UHGV-0199394_6	PF09479,PF00703,NF033188	N/A	N/A	N/A	N/A
PHROG	UHGV-0199394_12	phrog_16490	80.7	2.2e-23	N/A	unknown function
eggNOG-mapper	UHGV-0199394_12	397290.C810_01328	93.6	9.02e-21	N/A	N/A
structural_annotation	UHGV-0199394_15	PF07408,MF_01560,NF010187,COG4838	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0199394_19	PF06003,MF_01077,NF037951,COG1862	N/A	N/A	N/A	N/A
KOfam	UHGV-0199394_21	K02316	112.9	2.1e-33	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0199394_21	phrog_47	140.7	1.40004e-41	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0199394_21	UniRef90_A0A843GN62	287.0	0	Toprim domain-containing protein	N/A
eggNOG-mapper	UHGV-0199394_21	931626.Awo_c24320	73.9	0.0000000000134	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication	N/A
PADLOC	UHGV-0199394_21	drt-UG29	41.5	3.1e-24	DRT	DRT
Pfam	UHGV-0199394_21	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
Pfam	UHGV-0199394_21	PF13155	N/A	N/A	Toprim-like	Toprim_2
COG	UHGV-0199394_21	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-0199394_21	PF01807,PF13155,MF_00974,TIGR01391,COG0358	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0199394_23	PF08804	N/A	N/A	N/A	N/A
KOfam	UHGV-0199394_24	K02337	693.5	0	dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]	N/A
PHROG	UHGV-0199394_24	phrog_405	640.4	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0199394_24	UniRef90_A0A843GPT9	863.0	0	DNA-directed DNA polymerase	N/A
eggNOG-mapper	UHGV-0199394_24	224324.aq_1008	410.0	0	TIGRFAM DNA polymerase III, alpha subunit	N/A
Pfam	UHGV-0199394_24	PF02811	N/A	N/A	PHP domain	PHP
Pfam	UHGV-0199394_24	PF07733	N/A	N/A	Bacterial DNA polymerase III alpha NTPase domain	DNA_pol3_alpha
Pfam	UHGV-0199394_24	PF17657	N/A	N/A	Bacterial DNA polymerase III alpha subunit finger domain	DNA_pol3_finger
Pfam	UHGV-0199394_24	PF14579	N/A	N/A	Helix-hairpin-helix motif	HHH_6
NCBIFam	UHGV-0199394_24	TIGR00594.1	N/A	N/A	DNA polymerase III subunit alpha	N/A
COG	UHGV-0199394_24	COG0587	N/A	N/A	DNA polymerase III, alpha subunit	N/A
structural_annotation	UHGV-0199394_24	PF07733,PF02811,PF17657,PF14579,MF_01902,TIGR00594,COG0587	N/A	N/A	N/A	N/A
KOfam	UHGV-0199394_25	K03553	182.0	0	recA; recombination protein RecA	N/A
PHROG	UHGV-0199394_25	phrog_97	175.1	0	UvsX-like recombinase	other
UniRef90	UHGV-0199394_25	UniRef90_UPI001BCFCE00	155.0	1.49e-41	recombinase RecA	N/A
eggNOG-mapper	UHGV-0199394_25	879305.HMPREF9290_1573	144.0	7.59e-38	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage	N/A
Pfam	UHGV-0199394_25	PF00154	N/A	N/A	recA bacterial DNA recombination protein	RecA
COG	UHGV-0199394_25	COG0468	N/A	N/A	RecA/RadA recombinase	N/A
structural_annotation	UHGV-0199394_25	PF00154,MF_00268,TIGR02012,COG0468	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0199394_26	PF01775,MF_00273,NF010188,COG2157	N/A	N/A	N/A	N/A
PHROG	UHGV-0199394_27	phrog_2506	58.3	7.5e-17	exonuclease	DNA, RNA and nucleotide metabolism
structural_annotation	UHGV-0199394_27	PF01930,MF_03030,TIGR00372,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-0199394_30	phrog_799	79.8	3.5e-23	DNA methyltransferase	other
UniRef90	UHGV-0199394_30	UniRef90_A0A2N5H4R9	252.0	0	Sugar-phospahte nucleotidyltransferase	N/A
eggNOG-mapper	UHGV-0199394_30	1235797.C816_04032	150.0	4.34403e-44	site-specific DNA-methyltransferase (adenine-specific) activity	N/A
Pfam	UHGV-0199394_30	PF13651	N/A	N/A	Adenine-specific methyltransferase EcoRI	EcoRI_methylase
COG	UHGV-0199394_30	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-0199394_30	PF13651,MF_00607,NF000077,COG0286	N/A	N/A	N/A	N/A
KOfam	UHGV-0199394_34	K03427	73.4	3.2e-21	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	N/A
PHROG	UHGV-0199394_34	phrog_5696	258.2	0	N/A	unknown function
UniRef90	UHGV-0199394_34	UniRef90_A0A6N9P8V9	197.0	0	SAM-dependent DNA methyltransferase	N/A
eggNOG-mapper	UHGV-0199394_34	742733.HMPREF9469_05064	194.0	0	N-6 DNA Methylase	N/A
Pfam	UHGV-0199394_34	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-0199394_34	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-0199394_34	COG0286	N/A	N/A	N/A	N/A
PHROG	UHGV-0199394_35	phrog_159	56.9	2.7e-16	RuvC-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
structural_annotation	UHGV-0199394_35	PF02075,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
PHROG	UHGV-0199394_41	phrog_6466	60.1	3.4e-17	DNA ligase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0199394_41	UniRef90_A0A374ABN1	60.5	0.00000000113	DNA_ligase_aden domain-containing protein	N/A
eggNOG-mapper	UHGV-0199394_41	691965.D4P7L3_9CAUD	54.3	0.000000519	helicase activity	N/A
PHROG	UHGV-0199394_44	phrog_2002	54.4	0.000000000000001	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
structural_annotation	UHGV-0199394_44	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0199394_45	PF21138,NF009630,COG2375	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0199394_48	PF10922	N/A	N/A	N/A	N/A
KOfam	UHGV-0199394_49	K03469	143.8	1.3004e-42	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0199394_49	phrog_531	126.9	1.1e-37	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0199394_49	UniRef90_A0A2R6Y461	126.0	5.97e-34	Ribonuclease H	N/A
eggNOG-mapper	UHGV-0199394_49	632518.Calow_1132	128.0	8.08e-36	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	N/A
Pfam	UHGV-0199394_49	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0199394_49	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0199394_49	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0199394_50	PF14084	N/A	N/A	N/A	N/A
PHROG	UHGV-0199394_53	phrog_2412	62.7	6.3e-18	N/A	unknown function
UniRef90	UHGV-0199394_53	UniRef90_UPI0012B5FF1C	55.1	0.00000171	stress-induced protein	N/A
eggNOG-mapper	UHGV-0199394_53	120574.Q8SBI2_9CAUD	52.4	0.00000308	N/A	N/A
PHROG	UHGV-0199394_54	phrog_26445	44.2	0.0000000000039	N/A	unknown function
eggNOG-mapper	UHGV-0199394_54	97139.C824_00034	50.1	0.000000917	N/A	N/A
PHROG	UHGV-0199394_55	phrog_2245	69.9	3.9e-20	nucleoside triphosphate pyrophosphohydrolase	other
eggNOG-mapper	UHGV-0199394_55	665950.HMPREF1025_01374	58.2	0.00000000158	N/A	N/A
KOfam	UHGV-0199394_58	K06909	320.1	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0199394_58	phrog_3717	137.1	2.60642e-43	terminase large subunit	head and packaging
UniRef90	UHGV-0199394_58	UniRef90_A0A349YI29	538.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0199394_58	1443122.Z958_p0035	459.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0199394_58	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0199394_58	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0199394_58	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0199394_58	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0199394_58	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0199394_61	phrog_443	59.5	8.4e-17	holin	lysis
UniRef90	UHGV-0199394_61	UniRef90_UPI000C75746C	109.0	8.57e-30	holin	N/A
eggNOG-mapper	UHGV-0199394_61	626523.GCWU000342_01012	94.7	1.39e-24	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0199394_61	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0199394_61	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0199394_62	phrog_21357	140.7	5.70048e-42	endolysin	lysis
UniRef90	UHGV-0199394_62	UniRef90_D4MVQ6	192.0	0	CHAP domain	N/A
eggNOG-mapper	UHGV-0199394_62	1007096.BAGW01000017_gene816	146.0	1.11e-39	CHAP domain	N/A
Pfam	UHGV-0199394_62	PF05257	N/A	N/A	CHAP domain	CHAP
Pfam	UHGV-0199394_62	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0199394_62	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0199394_62	PF01471,PF00877,TIGR02594,TIGR03979,COG3942	N/A	N/A	N/A	N/A
PHROG	UHGV-0199394_63	phrog_64	111.8	4.5e-33	portal protein	head and packaging
UniRef90	UHGV-0199394_63	UniRef90_A0A843JBG3	354.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0199394_63	1567015.A0A0A7RUQ6_9VIRU	125.0	4.59e-28	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0199394_63	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0199394_63	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0199394_65	phrog_1657	191.1	0	head morphogenesis	head and packaging
UniRef90	UHGV-0199394_65	UniRef90_A0A1G9U003	152.0	3.65e-40	Phage Mu protein F like protein	N/A
eggNOG-mapper	UHGV-0199394_65	748727.CLJU_c31360	137.0	5.99e-34	Portal protein	N/A
COG	UHGV-0199394_65	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0199394_68	MF_02110	N/A	N/A	N/A	N/A
PHROG	UHGV-0199394_69	phrog_909	71.7	8.8e-21	major head protein	head and packaging
UniRef90	UHGV-0199394_69	UniRef90_A0A512PLH0	64.7	0.0000000000927	Putative structural protein-phage associated	N/A
eggNOG-mapper	UHGV-0199394_69	1158612.I580_01911	92.0	3.45e-22	N/A	N/A
structural_annotation	UHGV-0199394_69	PF02924	N/A	N/A	N/A	N/A
PHROG	UHGV-0199394_70	phrog_29	235.3	0	major head protein	head and packaging
UniRef90	UHGV-0199394_70	UniRef90_UPI00082C04A5	405.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-0199394_70	1158612.I580_01912	319.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0199394_70	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0199394_70	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0199394_71	PF07498	N/A	N/A	N/A	N/A
PHROG	UHGV-0199394_72	phrog_4020	70.3	2.1e-20	N/A	unknown function
eggNOG-mapper	UHGV-0199394_72	445335.CBN_3083	68.2	0.0000000000000566	N/A	N/A
PHROG	UHGV-0199394_73	phrog_8435	40.0	0.000000000054	N/A	unknown function
structural_annotation	UHGV-0199394_73	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0199394_74	1443122.Z958_05860	88.2	4.75e-21	N/A	N/A
structural_annotation	UHGV-0199394_74	PF04883,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0199394_75	phrog_7585	76.5	3.8e-22	N/A	unknown function
eggNOG-mapper	UHGV-0199394_75	1196322.A370_04060	64.3	0.0000000000221	N/A	N/A
structural_annotation	UHGV-0199394_75	PF05657,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0199394_76	phrog_6686	115.5	4e-34	tail tube protein	tail
UniRef90	UHGV-0199394_76	UniRef90_A0A1C6KI12	150.0	5.13996e-41	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0199394_76	1121342.AUCO01000012_gene1688	75.9	0.000000000000148	N/A	N/A
structural_annotation	UHGV-0199394_76	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0199394	Yes	45,848	34	100	1
UHGV-0273787	No	45,859	34	90	1
UHGV-1570030	No	19,366	35	38	1
UHGV-1564323	No	19,365	35	38	1
UHGV-1666074	No	16,977	35	34	1
UHGV-0164602	No	13,543	33	27	1
UHGV-1797186	No	12,436	33	25	1
UHGV-1825157	No	12,113	33	24	1
UHGV-1575624	No	12,098	33	24	1
UHGV-0167247	No	11,851	33	23	1
UHGV-1564056	No	11,851	33	23	1
UHGV-1649037	No	11,243	36	23	1
UHGV-1626091	No	10,584	36	21	1