vOTU vOTU-047479

vOTU: vOTU-047479

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-047479
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-05931 → vGENUS-13953 → vSUBGEN-22946 → vOTU-047479
Host lineage
Host range breadth
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0200151
Biosample ID	SAMN09781748
Genome length (bp)	42,819 bps
CheckV completeness	100.00% (Complete)
CDS count	61
CDS density	94.68%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method
CRISPR-predicted host lineage	Total connections	Host agreement
PHIST-predicted host lineage	Total connections	Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
COG	UHGV-0200151_1	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
KOfam	UHGV-0200151_2	K01447	79.6	5.1e-23	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0200151_2	phrog_1794	144.6	7.59504e-43	amidase	lysis
UniRef90	UHGV-0200151_2	UniRef90_UPI00049795D9	176.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0200151_2	411468.CLOSCI_00531	160.0	4.17026e-42	n-acetylmuramoyl-l-alanine amidase	N/A
Pfam	UHGV-0200151_2	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0200151_2	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
Pfam	UHGV-0200151_2	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
COG	UHGV-0200151_2	COG1705	N/A	N/A	Flagellum-specific peptidoglycan hydrolase FlgJ	N/A
structural_annotation	UHGV-0200151_2	PF01510,PF18342,MF_04111,NF008758,NF040670,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-0200151_4	phrog_10972	40.3	0.000000000027	tail fiber protein	tail
Pfam	UHGV-0200151_4	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
structural_annotation	UHGV-0200151_4	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-0200151_5	phrog_28077	94.4	3.5e-28	N/A	unknown function
eggNOG-mapper	UHGV-0200151_5	748224.HMPREF9436_01406	258.0	0	N/A	N/A
Pfam	UHGV-0200151_5	PF18819	N/A	N/A	Phage MuF-C-terminal domain	MuF_C
Pfam	UHGV-0200151_5	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
PHROG	UHGV-0200151_6	phrog_2649	55.0	0.000000000000002	endolysin	lysis
UniRef90	UHGV-0200151_6	UniRef90_R5DCX9	207.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0200151_6	1410650.JHWL01000003_gene2815	138.0	1.05e-33	N/A	N/A
Pfam	UHGV-0200151_6	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
structural_annotation	UHGV-0200151_6	PF01471,TIGR02869,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-0200151_7	phrog_372	224.0	0	tail protein	tail
UniRef90	UHGV-0200151_7	UniRef90_A0A3E3E6C0	176.0	2.94273e-44	Pilus assembly protein	N/A
eggNOG-mapper	UHGV-0200151_7	1235799.C818_01005	135.0	1.1e-30	the current gene model (or a revised gene model) may contain a frame shift	N/A
Pfam	UHGV-0200151_7	PF05895	N/A	N/A	N/A	DUF859
COG	UHGV-0200151_7	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0200151_7	PF05895,MF_04116,NF010681,COG3291	N/A	N/A	N/A	N/A
KOfam	UHGV-0200151_8	K07473	94.6	1.3e-27	dinJ; DNA-damage-inducible protein J	N/A
PHROG	UHGV-0200151_8	phrog_2737	64.6	1.1e-18	N/A	unknown function
UniRef90	UHGV-0200151_8	UniRef90_A0A3D2A8W7	103.0	5.44e-27	Type II toxin-antitoxin system antitoxin, RelB/DinJ family	N/A
eggNOG-mapper	UHGV-0200151_8	718252.FP2_05490	97.8	1.75e-25	RelB antitoxin	N/A
Pfam	UHGV-0200151_8	PF04221	N/A	N/A	RelB antitoxin	RelB
NCBIFam	UHGV-0200151_8	TIGR02384.1	N/A	N/A	type II toxin-antitoxin system RelB/DinJ family antitoxin	N/A
COG	UHGV-0200151_8	COG3077	N/A	N/A	Antitoxin component of the RelBE or YafQ-DinJ toxin-antitoxin module	N/A
structural_annotation	UHGV-0200151_8	PF04221,TIGR02384,COG3077	N/A	N/A	N/A	N/A
KOfam	UHGV-0200151_9	K19157	138.2	4.90006e-41	yafQ; mRNA interferase YafQ [EC:3.1.-.-]	N/A
PHROG	UHGV-0200151_9	phrog_7251	118.5	2e-35	RelE-like toxin	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0200151_9	UniRef90_A0A133ZK55	140.0	1.04004e-41	Addiction module toxin, RelE/StbE family	N/A
eggNOG-mapper	UHGV-0200151_9	476272.RUMHYD_01668	142.0	2.11596e-43	Bacterial toxin of type II toxin-antitoxin system, YafQ	N/A
Pfam	UHGV-0200151_9	PF15738	N/A	N/A	Bacterial toxin of type II toxin-antitoxin system, YafQ	YafQ_toxin
NCBIFam	UHGV-0200151_9	TIGR02385.1	N/A	N/A	type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	N/A
COG	UHGV-0200151_9	COG3041	N/A	N/A	mRNA-degrading endonuclease YafQ (mRNA interferase), toxin component of the YafQ-DinJ toxin-antitoxin module	N/A
structural_annotation	UHGV-0200151_9	PF15738,TIGR00053,COG3041	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0200151_10	NF038340	N/A	N/A	N/A	N/A
PHROG	UHGV-0200151_11	phrog_511	201.3	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0200151_11	1519439.JPJG01000060_gene1903	313.0	0	N/A	N/A
structural_annotation	UHGV-0200151_11	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0200151_12	phrog_12105	116.2	1.9e-34	N/A	unknown function
eggNOG-mapper	UHGV-0200151_12	1519439.JPJG01000060_gene1891	68.2	0.00000000000052	N/A	N/A
PHROG	UHGV-0200151_14	phrog_1357	228.7	0	major head protein	head and packaging
UniRef90	UHGV-0200151_14	UniRef90_UPI00047AA53B	352.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0200151_14	1410650.JHWL01000003_gene2830	352.0	0	N/A	N/A
NCBIFam	UHGV-0200151_14	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0200151_14	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0200151_15	phrog_13908	126.5	2.4e-37	N/A	unknown function
eggNOG-mapper	UHGV-0200151_15	1410650.JHWL01000003_gene2831	94.7	9.63e-20	N/A	N/A
KOfam	UHGV-0200151_16	K07584	52.0	0.000000000000013	N/A	N/A
PHROG	UHGV-0200151_16	phrog_4478	52.1	0.0000000000000091	peptidase	other
Pfam	UHGV-0200151_16	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0200151_16	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0200151_16	PF04327,NF011124,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0200151_17	phrog_156	332.0	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0200151_17	1410650.JHWL01000003_gene2833	587.0	0	N/A	N/A
structural_annotation	UHGV-0200151_17	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
KOfam	UHGV-0200151_18	K06909	104.2	1.5e-30	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0200151_18	phrog_979	207.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0200151_18	UniRef90_A0A1Y3WLG7	706.0	0	Terminase-like family protein	N/A
eggNOG-mapper	UHGV-0200151_18	748224.HMPREF9436_01395	708.0	0	Terminase-like family	N/A
Pfam	UHGV-0200151_18	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0200151_18	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0200151_18	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0200151_19	phrog_1206	40.1	0.0000000000027	terminase small subunit	head and packaging
COG	UHGV-0200151_19	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0200151_19	PF06056	N/A	N/A	N/A	N/A
PHROG	UHGV-0200151_20	phrog_3584	116.6	2e-34	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0200151_20	693746.OBV_25240	214.0	0	N/A	N/A
structural_annotation	UHGV-0200151_20	PF01446,NF041486	N/A	N/A	N/A	N/A
UniRef90	UHGV-0200151_23	UniRef90_A0A174XWS3	73.9	0.00000000000000632	Bacterial regulatory proteins, luxR family	N/A
eggNOG-mapper	UHGV-0200151_23	689781.AUJX01000009_gene401	60.5	0.0000000019	N/A	N/A
Pfam	UHGV-0200151_23	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
Pfam	UHGV-0200151_23	PF12802	N/A	N/A	MarR family	MarR_2
structural_annotation	UHGV-0200151_23	PF13384,NF040595	N/A	N/A	N/A	N/A
KOfam	UHGV-0200151_24	K22300	66.4	5.6e-19	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0200151_24	phrog_7241	54.7	0.0000000000000018	transcriptional regulator	transcription regulation
UniRef90	UHGV-0200151_24	UniRef90_A0A2V2FT63	61.2	0.0000000000722	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0200151_24	502558.EGYY_14630	50.8	0.00000153	sequence-specific DNA binding	N/A
PADLOC	UHGV-0200151_24	retron_type_VI_hth_cluster2_1	41.3	0.000000000041	N/A	Retron
Pfam	UHGV-0200151_24	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0200151_24	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
UniRef90	UHGV-0200151_29	UniRef90_A0A3A6ECV8	113.0	2.44e-30	N/A	N/A
eggNOG-mapper	UHGV-0200151_29	411470.RUMGNA_00214	83.6	3.58e-18	N/A	N/A
Pfam	UHGV-0200151_29	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0200151_29	PF04448,NF041588	N/A	N/A	N/A	N/A
KOfam	UHGV-0200151_32	K19779	41.3	0.000000000024	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	N/A
PHROG	UHGV-0200151_32	phrog_599	46.0	0.0000000000011	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0200151_32	UniRef90_UPI0012B5467F	50.1	0.00000104	Lar family restriction alleviation protein	N/A
Pfam	UHGV-0200151_32	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0200151_32	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-0200151_32	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-0200151_32	PF14354,NF007260	N/A	N/A	N/A	N/A
PHROG	UHGV-0200151_33	phrog_599	57.0	4.7e-16	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0200151_33	UniRef90_A0A412AV49	96.3	1.84e-24	Restriction alleviation protein, Lar family	N/A
eggNOG-mapper	UHGV-0200151_33	1235790.C805_00069	77.8	5.79e-18	Restriction alleviation protein Lar	N/A
Pfam	UHGV-0200151_33	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0200151_33	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-0200151_33	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-0200151_33	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-0200151_35	phrog_424	93.3	2e-27	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0200151_35	UniRef90_A0A7C4YDR6	585.0	0	PAPS_reduct domain-containing protein	N/A
eggNOG-mapper	UHGV-0200151_35	1235800.C819_02256	523.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
Pfam	UHGV-0200151_35	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0200151_35	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0200151_35	PF01507,MF_00063,TIGR00434,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0200151_39	phrog_24368	42.1	0.000000000013	N/A	unknown function
eggNOG-mapper	UHGV-0200151_39	1235798.C817_02588	53.1	0.000000575	N/A	N/A
PHROG	UHGV-0200151_44	phrog_21498	304.8	0	N/A	unknown function
UniRef90	UHGV-0200151_44	UniRef90_C7MM70	229.0	0	ParB-like nuclease	N/A
eggNOG-mapper	UHGV-0200151_44	78346.BRUM_0376	232.0	0	DNA binding	N/A
COG	UHGV-0200151_44	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0200151_44	PF05869,TIGR01712	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0200151_48	742738.HMPREF9460_00848	117.0	1.55e-32	N/A	N/A
structural_annotation	UHGV-0200151_48	PF12728,TIGR01764	N/A	N/A	N/A	N/A
KOfam	UHGV-0200151_52	K22300	67.6	2.5e-19	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0200151_52	phrog_8	57.1	2.3e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0200151_52	UniRef90_R9K5V7	138.0	1.24e-39	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0200151_52	397290.C810_05152	138.0	2.08e-40	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-0200151_52	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0200151_52	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0200151_52	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0200151_55	PF13560,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0200151_56	K14059	135.3	7.80001e-40	int; integrase	N/A
PHROG	UHGV-0200151_56	phrog_1	158.0	0	integrase	integration and excision
UniRef90	UHGV-0200151_56	UniRef90_A0A3D4D8C4	450.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0200151_56	742738.HMPREF9460_00840	378.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0200151_56	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0200151_56	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0200151_56	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0200151_57	1378168.N510_03079	85.9	2.55e-18	N/A	N/A
Pfam	UHGV-0200151_60	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
PHROG	UHGV-0200151_61	phrog_199	62.7	4.5e-18	holin	lysis
UniRef90	UHGV-0200151_61	UniRef90_UPI001D088B5E	144.0	3.74987e-42	phage holin family protein	N/A
eggNOG-mapper	UHGV-0200151_61	97139.C824_03357	134.0	5.8e-39	TIGRFAM toxin secretion phage lysis holin	N/A
Pfam	UHGV-0200151_61	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0200151_61	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0200151_61	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0200151_61	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0200151	Yes	42,819	65	100	1
UHGV-0175361	No	15,173	65	35	1