vOTU vOTU-047610

vOTU: vOTU-047610

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-047610
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00486 → vGENUS-19557 → vSUBGEN-37929 → vOTU-047610
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83
Host range breadth	Genus
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0203060
Biosample ID	SAMN09781755
Genome length (bp)	40,598 bps
CheckV completeness	100.00% (Complete)
CDS count	50
CDS density	92.51%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83	Total connections	8	Host agreement	75
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0203060_1	phrog_3584	144.6	5.00264e-43	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0203060_1	1226322.HMPREF1545_03841	128.0	7.1e-33	N/A	N/A
structural_annotation	UHGV-0203060_1	PF01446,NF041486	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0203060_2	1226322.HMPREF1545_00288	50.4	0.00000103	N/A	N/A
UniRef90	UHGV-0203060_3	UniRef90_UPI001D0E5D20	61.6	0.0000000000203	CopG family transcriptional regulator	N/A
Pfam	UHGV-0203060_3	PF01402	N/A	N/A	Ribbon-helix-helix protein, copG family	RHH_1
structural_annotation	UHGV-0203060_3	PF01402,NF041793,COG4453	N/A	N/A	N/A	N/A
PHROG	UHGV-0203060_5	phrog_374	149.3	2.52234e-44	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0203060_5	UniRef90_UPI0011CC6E20	128.0	5.48e-34	AP2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0203060_5	1460635.JCM19038_3433	132.0	4.75e-36	N/A	N/A
structural_annotation	UHGV-0203060_5	PF17375	N/A	N/A	N/A	N/A
KOfam	UHGV-0203060_6	K07474	79.0	1.2e-22	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0203060_6	phrog_51	79.7	4.3e-23	terminase small subunit	head and packaging
UniRef90	UHGV-0203060_6	UniRef90_A0A4R2M2T5	96.3	1.46e-22	Phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0203060_6	1462526.BN990_03868	77.8	6.7e-16	Terminase small subunit	N/A
Pfam	UHGV-0203060_6	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0203060_6	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0203060_6	PF03592,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-0203060_7	phrog_156	237.3	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0203060_7	693746.OBV_23930	584.0	0	N/A	N/A
structural_annotation	UHGV-0203060_7	PF12236,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0203060_8	NF007241	N/A	N/A	N/A	N/A
PHROG	UHGV-0203060_10	phrog_35275	76.4	3.5e-22	N/A	unknown function
eggNOG-mapper	UHGV-0203060_10	693746.OBV_23910	139.0	4e-36	N/A	N/A
PHROG	UHGV-0203060_11	phrog_24113	80.3	1.7e-23	N/A	unknown function
eggNOG-mapper	UHGV-0203060_11	1226322.HMPREF1545_03847	77.0	3.5e-16	N/A	N/A
structural_annotation	UHGV-0203060_11	PF11133,COG5471	N/A	N/A	N/A	N/A
PHROG	UHGV-0203060_12	phrog_371	131.0	7.9e-39	major head protein	head and packaging
UniRef90	UHGV-0203060_12	UniRef90_R6TFU9	450.0	0	Mu-like_gpT domain-containing protein	N/A
eggNOG-mapper	UHGV-0203060_12	693746.OBV_23890	402.0	0	N/A	N/A
Pfam	UHGV-0203060_12	PF10124	N/A	N/A	Mu-like prophage major head subunit gpT	Mu-like_gpT
structural_annotation	UHGV-0203060_12	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0203060_13	693746.OBV_23880	155.0	8.40779e-45	N/A	N/A
structural_annotation	UHGV-0203060_13	PF20387	N/A	N/A	N/A	N/A
PHROG	UHGV-0203060_14	phrog_3287	129.5	2.2e-38	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0203060_14	693746.OBV_23870	793.0	0	N/A	N/A
structural_annotation	UHGV-0203060_14	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0203060_15	1408437.JNJN01000002_gene1389	59.7	0.000000466	N/A	N/A
eggNOG-mapper	UHGV-0203060_16	411471.SUBVAR_06929	65.1	0.0000000000852	ATPase involved in DNA repair	N/A
COG	UHGV-0203060_16	COG0419	N/A	N/A	DNA repair exonuclease SbcCD ATPase subunit	N/A
structural_annotation	UHGV-0203060_17	PF05635,NF033474,COG3308	N/A	N/A	N/A	N/A
KOfam	UHGV-0203060_18	K00986	104.2	1.4e-30	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-0203060_18	phrog_1423	169.4	0	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0203060_18	UniRef90_A0A252F313	271.0	0	Reverse transcriptase domain-containing protein	N/A
eggNOG-mapper	UHGV-0203060_18	1226322.HMPREF1545_03570	164.0	1.82169e-44	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
PADLOC	UHGV-0203060_18	icity0040	76.1	6e-22	RT (reverse transcriptase)	CRISPR-CAS
Pfam	UHGV-0203060_18	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
COG	UHGV-0203060_18	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-0203060_18	PF00078,MF_01390,TIGR04416,COG3344	N/A	N/A	N/A	N/A
PHROG	UHGV-0203060_19	phrog_10993	52.7	8.4e-21	Hoc-like head decoration	head and packaging
UniRef90	UHGV-0203060_19	UniRef90_A0A252F2M2	255.0	0	N/A	N/A
Pfam	UHGV-0203060_19	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0203060_19	PF19789	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0203060_21	1235797.C816_04174	137.0	7.19001e-40	N/A	N/A
structural_annotation	UHGV-0203060_21	PF14600	N/A	N/A	N/A	N/A
PHROG	UHGV-0203060_22	phrog_1863	63.0	8.3e-19	N/A	unknown function
UniRef90	UHGV-0203060_22	UniRef90_A0A8D9UH94	94.7	9.01e-24	Hemolysin	N/A
eggNOG-mapper	UHGV-0203060_22	1226322.HMPREF1545_04027	99.0	3.02e-26	N/A	N/A
PHROG	UHGV-0203060_23	phrog_1129	65.5	5.5e-19	holin	lysis
UniRef90	UHGV-0203060_23	UniRef90_A0A8D9PDD4	144.0	2.84464e-43	Holin	N/A
eggNOG-mapper	UHGV-0203060_23	1007096.BAGW01000036_gene2663	108.0	6.67e-30	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0203060_23	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0203060_23	PF06946	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0203060_24	693746.OBV_01600	62.8	0.000000103	N/A	N/A
Pfam	UHGV-0203060_24	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
UniRef90	UHGV-0203060_25	UniRef90_R6T5E1	620.0	0	PBECR3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0203060_25	1226322.HMPREF1545_00787	575.0	0	N/A	N/A
KOfam	UHGV-0203060_26	K10742	92.8	2.5e-29	DNA2; DNA replication ATP-dependent helicase/nuclease Dna2 [EC:5.6.2.3 3.1.-.-]	N/A
PHROG	UHGV-0203060_26	phrog_25411	54.8	4.9e-26	N/A	unknown function
UniRef90	UHGV-0203060_26	UniRef90_UPI000F635524	412.0	0	AAA domain-containing protein	N/A
eggNOG-mapper	UHGV-0203060_26	693746.OBV_24130	484.0	0	nuclear chromosome segregation	N/A
Pfam	UHGV-0203060_26	PF13086	N/A	N/A	AAA domain	AAA_11
Pfam	UHGV-0203060_26	PF13087	N/A	N/A	AAA domain	AAA_12
COG	UHGV-0203060_26	COG0507	N/A	N/A	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	N/A
KOfam	UHGV-0203060_27	K06400	326.4	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0203060_27	phrog_95	321.9	0	integrase	integration and excision
UniRef90	UHGV-0203060_27	UniRef90_G4KP73	623.0	0	Putative site-specific recombinase	N/A
eggNOG-mapper	UHGV-0203060_27	693746.OBV_21880	623.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0203060_27	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0203060_27	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0203060_27	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0203060_27	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0203060_27	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-0203060_28	K22300	70.9	2.4e-20	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0203060_28	phrog_8	66.5	6.1e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-0203060_28	UniRef90_A0A3D4D7M3	100.0	5.43e-25	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0203060_28	1540257.JQMW01000013_gene710	85.5	5.37e-20	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0203060_28	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0203060_28	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0203060_28	PF13560,MF_00535,NF007257,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0203060_29	UniRef90_A0A6M1WKA8	60.5	0.000000000141	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0203060_29	536233.CLO_0858	55.8	0.00000000158	Helix-turn-helix	N/A
structural_annotation	UHGV-0203060_29	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0203060_31	693746.OBV_21850	52.8	0.0000000187	N/A	N/A
structural_annotation	UHGV-0203060_32	PF15591,MF_01549,NF007981	N/A	N/A	N/A	N/A
PHROG	UHGV-0203060_36	phrog_38338	72.5	6.6e-21	N/A	unknown function
eggNOG-mapper	UHGV-0203060_36	693746.OBV_24020	99.0	4.17e-25	N/A	N/A
PHROG	UHGV-0203060_37	phrog_8470	214.8	0	N/A	unknown function
UniRef90	UHGV-0203060_37	UniRef90_UPI00195E492B	434.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0203060_37	1378168.N510_01842	402.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0203060_37	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0203060_37	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0203060_38	phrog_15609	194.7	0	N/A	unknown function
UniRef90	UHGV-0203060_38	UniRef90_UPI001C102D5E	187.0	0	N/A	N/A
eggNOG-mapper	UHGV-0203060_38	693746.OBV_25390	151.0	7.98e-40	N/A	N/A
Pfam	UHGV-0203060_38	PF11300	N/A	N/A	N/A	DUF3102
COG	UHGV-0203060_38	COG2433	N/A	N/A	Possible nuclease of RNase H fold, RuvC/YqgF family	N/A
structural_annotation	UHGV-0203060_38	PF11300,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-0203060_41	phrog_38832	57.8	1.6e-16	N/A	unknown function
eggNOG-mapper	UHGV-0203060_41	665956.HMPREF1032_00143	74.7	0.0000000000000138	N/A	N/A
KOfam	UHGV-0203060_43	K07738	42.0	0.000000000013	nrdR; transcriptional repressor NrdR	N/A
eggNOG-mapper	UHGV-0203060_43	1120956.JHZK01000007_gene2862	50.4	0.0000027	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes	N/A
COG	UHGV-0203060_43	COG1327	N/A	N/A	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	N/A
structural_annotation	UHGV-0203060_43	PF04606,NF007241,COG3478	N/A	N/A	N/A	N/A
PHROG	UHGV-0203060_44	phrog_2	97.7	1.9e-28	terminase large subunit	head and packaging
UniRef90	UHGV-0203060_44	UniRef90_R6TQ60	643.0	0	Putative terminase large subunit	N/A
eggNOG-mapper	UHGV-0203060_44	693746.OBV_23980	628.0	0	phage Terminase large subunit	N/A
COG	UHGV-0203060_44	COG4373	N/A	N/A	Mu-like prophage FluMu protein gp28	N/A
structural_annotation	UHGV-0203060_44	PF03237,PF17289,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
KOfam	UHGV-0203060_45	K01448	66.7	3.4e-19	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0203060_45	phrog_435	79.4	4.9e-23	endolysin	lysis
UniRef90	UHGV-0203060_45	UniRef90_R6GV68	147.0	8.78e-39	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0203060_45	1235835.C814_03031	87.8	4.1e-17	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0203060_45	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-0203060_45	PF05036	N/A	N/A	SPOR domain	SPOR
COG	UHGV-0203060_45	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0203060_46	PF09228	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0203060_48	NF040595	N/A	N/A	N/A	N/A
KOfam	UHGV-0203060_49	K07726	41.5	0.000000000023	K07726; putative transcriptional regulator	N/A
PHROG	UHGV-0203060_49	phrog_25567	55.4	8.1e-16	N/A	unknown function
UniRef90	UHGV-0203060_49	UniRef90_UPI00164AED9E	127.0	9.77e-36	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0203060_49	1235798.C817_04600	85.5	3.98e-20	N/A	N/A
Pfam	UHGV-0203060_49	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0203060_49	NF040522,COG2944	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0203060	Yes	40,598	61	100	1