vOTU vOTU-047641

vOTU: vOTU-047641

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-047641
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00008 → vSUBFAM-00063 → vGENUS-00033 → vSUBGEN-02300 → vOTU-047641
Host lineage	Bacteria → Firmicutes_C → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella parvula_A
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0203267
Biosample ID	N/A
Genome length (bp)	36,314 bps
CheckV completeness	100.00% (Complete)
CDS count	53
CDS density	95.44%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_C → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella parvula_A	Total connections	128	Host agreement	77.34
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0203267_1	phrog_8	48.0	0.00000000000026	transcriptional regulator	transcription regulation
UniRef90	UHGV-0203267_1	UniRef90_UPI001D06C8D0	158.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0203267_1	552396.HMPREF0863_02446	72.4	0.00000000000000223	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0203267_1	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0203267_1	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0203267_2	phrog_87	54.5	0.0000000000000015	metallo-protease	other
UniRef90	UHGV-0203267_2	UniRef90_UPI001D082CAF	160.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0203267_2	526218.Sterm_1388	62.8	0.000000000087	IrrE N-terminal-like domain	N/A
Pfam	UHGV-0203267_2	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0203267_2	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0203267_2	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-0203267_4	K14059	226.9	0	int; integrase	N/A
PHROG	UHGV-0203267_4	phrog_1	199.8	0	integrase	integration and excision
UniRef90	UHGV-0203267_4	UniRef90_UPI001D0FEBEF	566.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0203267_4	1401067.HMPREF0872_00475	223.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0203267_4	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-0203267_4	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0203267_4	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0203267_4	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0203267_6	phrog_10797	188.2	0	N/A	unknown function
UniRef90	UHGV-0203267_6	UniRef90_UPI0018C518C1	112.0	1.21e-27	glycoprotease	N/A
eggNOG-mapper	UHGV-0203267_6	883156.HMPREF9282_01266	152.0	1.68156e-44	N/A	N/A
structural_annotation	UHGV-0203267_6	PF06531	N/A	N/A	N/A	N/A
KOfam	UHGV-0203267_7	K07273	157.0	0	acm; lysozyme	N/A
PHROG	UHGV-0203267_7	phrog_6745	124.7	7.6e-37	endolysin	lysis
UniRef90	UHGV-0203267_7	UniRef90_UPI001D0872FD	403.0	0	glycosyl hydrolase family 25	N/A
eggNOG-mapper	UHGV-0203267_7	910314.HMPREF9220_0603	267.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0203267_7	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0203267_7	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0203267_7	PF01183,NF008377,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0203267_8	phrog_199	40.6	0.000000000019	holin	lysis
UniRef90	UHGV-0203267_8	UniRef90_UPI000E74DE8A	306.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-0203267_8	883156.HMPREF9282_00970	242.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-0203267_8	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
structural_annotation	UHGV-0203267_8	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0203267_9	phrog_9854	548.0	0	N/A	unknown function
UniRef90	UHGV-0203267_9	UniRef90_UPI001D087CF6	2878.0	0	phage tail tip lysozyme	N/A
eggNOG-mapper	UHGV-0203267_9	401526.TcarDRAFT_1293	956.0	0	protein secretion by the type IV secretion system	N/A
Pfam	UHGV-0203267_9	PF18013	N/A	N/A	Phage tail lysozyme	Phage_lysozyme2
Pfam	UHGV-0203267_9	PF18857	N/A	N/A	Large polyvalent protein associated domain 38	LPD38
COG	UHGV-0203267_9	COG0503	N/A	N/A	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	N/A
structural_annotation	UHGV-0203267_9	PF18857,PF18013	N/A	N/A	N/A	N/A
UniRef90	UHGV-0203267_11	UniRef90_UPI001D07B8A4	677.0	0	Hint domain-containing protein	N/A
eggNOG-mapper	UHGV-0203267_11	1123288.SOV_4c02760	120.0	3.92e-27	N/A	N/A
Pfam	UHGV-0203267_11	PF13403	N/A	N/A	Hint domain	Hint_2
structural_annotation	UHGV-0203267_11	PF07591,NF038136,TIGR03017,COG4942	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0203267_12	PF11039,MF_00084,NF000482,COG3818	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0203267_14	PF20747	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0203267_15	1485543.JMME01000005_gene872	355.0	0	N/A	N/A
structural_annotation	UHGV-0203267_15	PF11134,MF_00923,NF000022,COG4257	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0203267_16	PF20387	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0203267_17	PF20387	N/A	N/A	N/A	N/A
PHROG	UHGV-0203267_18	phrog_334	201.5	0	major head protein	head and packaging
UniRef90	UHGV-0203267_18	UniRef90_UPI000E723A53	639.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0203267_18	401526.TcarDRAFT_1286	251.0	0	N/A	N/A
Pfam	UHGV-0203267_18	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0203267_18	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0203267_18	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0203267_20	phrog_156	345.7	0	portal protein	head and packaging
UniRef90	UHGV-0203267_20	UniRef90_F7NK66	362.0	0	Putative phage portal protein	N/A
eggNOG-mapper	UHGV-0203267_20	401526.TcarDRAFT_1284	392.0	0	Tfp pilus assembly protein FimV	N/A
COG	UHGV-0203267_20	COG3170	N/A	N/A	Type IV pilus assembly protein FimV	N/A
structural_annotation	UHGV-0203267_20	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
KOfam	UHGV-0203267_22	K06909	118.9	5.4e-35	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0203267_22	phrog_979	161.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0203267_22	UniRef90_UPI001D07F325	916.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0203267_22	1121091.AUMP01000003_gene2581	384.0	0	Terminase-like family	N/A
Pfam	UHGV-0203267_22	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0203267_22	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0203267_22	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0203267_23	K07474	122.5	6.2e-36	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0203267_23	phrog_51	129.6	1.5e-38	terminase small subunit	head and packaging
UniRef90	UHGV-0203267_23	UniRef90_UPI001D073EE5	244.0	0	terminase small subunit	N/A
eggNOG-mapper	UHGV-0203267_23	1280689.AUJC01000003_gene961	124.0	6.52e-35	Terminase small subunit	N/A
Pfam	UHGV-0203267_23	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0203267_23	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0203267_23	PF03592,COG3728	N/A	N/A	N/A	N/A
UniRef90	UHGV-0203267_26	UniRef90_A0A847PRP4	55.5	0.00000000648	Helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-0203267_26	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0203267_26	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-0203267_26	PF01381,NF040522,COG2944	N/A	N/A	N/A	N/A
PHROG	UHGV-0203267_29	phrog_36	43.6	0.0000000000054	transcriptional regulator	transcription regulation
UniRef90	UHGV-0203267_29	UniRef90_A0A6N2ZMD2	61.6	0.0000000055	Sigma-70, region 4	N/A
eggNOG-mapper	UHGV-0203267_29	706434.HMPREF9429_00383	60.5	0.00000000252	N/A	N/A
structural_annotation	UHGV-0203267_29	PF07374,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0203267_31	phrog_774	79.3	5.6e-23	N/A	unknown function
UniRef90	UHGV-0203267_31	UniRef90_A0A0B7LQN3	80.9	3.08e-18	N/A	N/A
eggNOG-mapper	UHGV-0203267_31	1435051.BMOU_0242	65.1	0.000000000011	Helix-turn-helix domain	N/A
COG	UHGV-0203267_31	COG3311	N/A	N/A	DNA-binding transcriptional regulator AlpA	N/A
KOfam	UHGV-0203267_32	K01520	134.6	8.20001e-40	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-0203267_32	phrog_135	142.9	1.3004e-42	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0203267_32	UniRef90_UPI001D07D29E	279.0	0	dUTP diphosphatase	N/A
eggNOG-mapper	UHGV-0203267_32	66692.ABC2847	132.0	6.66e-37	deoxyuridine 5'-triphosphate nucleotidohydrolase	N/A
Pfam	UHGV-0203267_32	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-0203267_32	TIGR00576.1	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-0203267_32	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-0203267_32	PF00692,MF_00116,TIGR00576,COG0756	N/A	N/A	N/A	N/A
KOfam	UHGV-0203267_33	K01160	44.1	0.000000000005	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0203267_33	phrog_34	41.9	0.000000000019	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0203267_33	UniRef90_UPI001D065A38	266.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0203267_33	1273103.NM10_01114	98.2	1.99e-24	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0203267_33	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
structural_annotation	UHGV-0203267_33	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0203267_34	phrog_21026	60.9	2.1e-17	N/A	unknown function
KOfam	UHGV-0203267_36	K00558	253.8	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0203267_36	phrog_116	280.5	0	DNA methyltransferase	other
UniRef90	UHGV-0203267_36	UniRef90_E4L8C0	511.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0203267_36	910314.HMPREF9220_1103	511.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0203267_36	MTase_II_00058	296.5	0	Type II methyltransferase	RM
Pfam	UHGV-0203267_36	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0203267_36	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0203267_36	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0203267_36	PF00145,MF_00786,TIGR00675,COG0270	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0203267_38	PF11305,MF_01360	N/A	N/A	N/A	N/A
PHROG	UHGV-0203267_39	phrog_954	224.0	0	DNA methyltransferase	other
UniRef90	UHGV-0203267_39	UniRef90_A0A239ZA70	293.0	0	Methyltransferase domain	N/A
eggNOG-mapper	UHGV-0203267_39	1401067.HMPREF0872_03435	259.0	0	methyltransferase	N/A
PADLOC	UHGV-0203267_39	MTase_II_00074	222.5	0	Type II methyltransferase	RM
Pfam	UHGV-0203267_39	PF08241	N/A	N/A	Methyltransferase domain	Methyltransf_11
COG	UHGV-0203267_39	COG0500	N/A	N/A	SAM-dependent methyltransferase	N/A
structural_annotation	UHGV-0203267_39	PF01170,MF_01057,TIGR00446,COG4123	N/A	N/A	N/A	N/A
PHROG	UHGV-0203267_40	phrog_9107	41.4	0.000000000018	N/A	unknown function
eggNOG-mapper	UHGV-0203267_40	562743.JH976434_gene1036	51.6	0.000000111	N/A	N/A
structural_annotation	UHGV-0203267_41	PF16857,MF_00273	N/A	N/A	N/A	N/A
KOfam	UHGV-0203267_42	K03111	147.0	1.79366e-43	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0203267_42	phrog_44	124.6	8.5e-37	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0203267_42	UniRef90_UPI0019613F2D	242.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0203267_42	879309.HMPREF9199_0149	189.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0203267_42	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0203267_42	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0203267_42	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0203267_42	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0203267_42	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
Pfam	UHGV-0203267_43	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0203267_43	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0203267_44	phrog_9804	83.5	2.4e-24	N/A	unknown function
UniRef90	UHGV-0203267_44	UniRef90_W9E7Y7	58.9	0.000000242	Inhibitor_G39P domain-containing protein	N/A
eggNOG-mapper	UHGV-0203267_44	1094508.Tsac_2439	58.9	0.0000000406	Loader and inhibitor of phage G40P	N/A
structural_annotation	UHGV-0203267_44	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-0203267_45	phrog_1163	219.7	0	N/A	unknown function
UniRef90	UHGV-0203267_45	UniRef90_UPI001D075DB7	535.0	0	conserved phage C-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0203267_45	372457.A7DYC7_9CAUD	201.0	0	calcium ion binding	N/A
Pfam	UHGV-0203267_45	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-0203267_45	TIGR02220.1	N/A	N/A	phage conserved hypothetical protein, C-terminal domain	N/A
structural_annotation	UHGV-0203267_45	PF09524,PF09681,TIGR02220,TIGR01714	N/A	N/A	N/A	N/A
KOfam	UHGV-0203267_46	K07451	55.4	0.0000000000000013	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0203267_46	phrog_7370	50.5	0.000000000000035	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0203267_46	UniRef90_UPI001D092C21	183.0	0	HNH endonuclease	N/A
Pfam	UHGV-0203267_46	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0203267_46	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0203267_46	PF01844,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-0203267_47	phrog_72	53.9	0.0000000000000024	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0203267_47	UniRef90_R5BGH3	130.0	4.79e-35	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0203267_47	445972.ANACOL_01825	104.0	1.1e-25	N/A	N/A
PHROG	UHGV-0203267_48	phrog_14970	278.5	0	N/A	unknown function
UniRef90	UHGV-0203267_48	UniRef90_A0A1C5NV07	221.0	0	DNA damage response protein A	N/A
eggNOG-mapper	UHGV-0203267_48	428127.EUBDOL_01248	215.0	0	double-strand break repair protein	N/A
COG	UHGV-0203267_48	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0203267_48	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0203267_49	phrog_253	130.2	1.3e-38	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0203267_49	UniRef90_UPI001D06B209	262.0	0	siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-0203267_49	1226322.HMPREF1545_04074	89.4	2.74e-20	Siphovirus Gp157	N/A
Pfam	UHGV-0203267_49	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0203267_49	PF05565,NF002139	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0203267_51	NF007883	N/A	N/A	N/A	N/A
PHROG	UHGV-0203267_52	phrog_7735	61.5	1.4e-17	excisionase	integration and excision
UniRef90	UHGV-0203267_52	UniRef90_UPI001D08DF46	158.0	0	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0203267_52	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
structural_annotation	UHGV-0203267_52	PF12728,NF033787,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0203267_53	phrog_8	47.9	0.00000000000031	transcriptional regulator	transcription regulation
UniRef90	UHGV-0203267_53	UniRef90_UPI001D085387	99.4	3.05e-26	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0203267_53	1304866.K413DRAFT_0834	64.3	0.00000000000102	PFAM helix-turn-helix domain protein	N/A
Pfam	UHGV-0203267_53	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0203267_53	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0203267_53	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0203267	Yes	36,314	39	100	1