vOTU vOTU-047656

vOTU: vOTU-047656

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-047656
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-01959 → vGENUS-03422 → vSUBGEN-06707 → vOTU-047656
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → CAG-272 → Flemingibacterium → Flemingibacterium sp900546315
Host range breadth	Species
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-0203358
Biosample ID	SAMN11252295
Genome length (bp)	41,751 bps
CheckV completeness	100.00% (Complete)
CDS count	72
CDS density	95.83%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → CAG-272 → Flemingibacterium → Flemingibacterium sp900546315	Total connections	4	Host agreement	75
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0203358_1	phrog_88	106.6	1.5e-31	major tail protein	tail
UniRef90	UHGV-0203358_1	UniRef90_UPI0018771F27	273.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0203358_1	349161.Dred_2600	102.0	6.93e-24	N/A	N/A
NCBIFam	UHGV-0203358_1	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0203358_1	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0203358_2	662755.CRES_0875	63.5	0.0000000000464	N/A	N/A
structural_annotation	UHGV-0203358_2	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0203358_3	phrog_58	197.8	0	tail length tape measure protein	tail
UniRef90	UHGV-0203358_3	UniRef90_A0A316QKN8	289.0	0	Phage tail protein (Fragment)	N/A
eggNOG-mapper	UHGV-0203358_3	1230342.CTM_17027	251.0	0	tape measure	N/A
COG	UHGV-0203358_3	COG5185	N/A	N/A	Chromosome segregation protein NDC80, interacts with SMC proteins	N/A
structural_annotation	UHGV-0203358_3	PF20155,COG5280	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0203358_4	1235797.C816_02660	110.0	1.02e-29	N/A	N/A
structural_annotation	UHGV-0203358_4	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0203358_5	phrog_13879	390.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0203358_5	1235797.C816_02659	450.0	0	N/A	N/A
structural_annotation	UHGV-0203358_5	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-0203358_6	phrog_18725	66.5	4e-19	N/A	unknown function
eggNOG-mapper	UHGV-0203358_6	1226322.HMPREF1545_00062	73.9	0.0000000000000386	N/A	N/A
PHROG	UHGV-0203358_9	phrog_18593	123.9	1.1e-36	N/A	unknown function
UniRef90	UHGV-0203358_9	UniRef90_A0A2Y9CAD1	168.0	0	Carbohydrate binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0203358_9	411460.RUMTOR_02099	141.0	7.36e-40	N/A	N/A
Pfam	UHGV-0203358_9	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-0203358_9	PF14600	N/A	N/A	N/A	N/A
PHROG	UHGV-0203358_10	phrog_9428	155.1	0	N/A	unknown function
UniRef90	UHGV-0203358_10	UniRef90_A0A7X5DY06	132.0	4.9e-38	Serine/threonine protein kinase	N/A
eggNOG-mapper	UHGV-0203358_10	552398.HMPREF0866_01584	156.0	0	N/A	N/A
eggNOG-mapper	UHGV-0203358_11	1519439.JPJG01000060_gene1892	79.3	0.0000000000027	Collagen triple helix repeat (20 copies)	N/A
COG	UHGV-0203358_11	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-0203358_11	PF10651,NF033814	N/A	N/A	N/A	N/A
KOfam	UHGV-0203358_13	K07273	164.6	0	acm; lysozyme	N/A
PHROG	UHGV-0203358_13	phrog_291	142.8	3.00018e-42	endolysin	lysis
UniRef90	UHGV-0203358_13	UniRef90_N9XS33	135.0	1.73e-34	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0203358_13	999411.HMPREF1092_03301	135.0	2.9e-35	family 25	N/A
Pfam	UHGV-0203358_13	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0203358_13	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-0203358_13	PF01183,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0203358_14	phrog_6918	60.0	3.3e-17	holin	lysis
UniRef90	UHGV-0203358_14	UniRef90_A0A847VZ28	52.4	0.00000254	Holin	N/A
eggNOG-mapper	UHGV-0203358_14	1519439.JPJG01000059_gene1950	53.5	0.000000126	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-0203358_14	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
structural_annotation	UHGV-0203358_14	PF09682,TIGR01673	N/A	N/A	N/A	N/A
UniRef90	UHGV-0203358_15	UniRef90_A0A843IZ65	63.2	0.0000000000129	Sigma70_r4 domain-containing protein	N/A
structural_annotation	UHGV-0203358_15	PF04545,MF_00245,NF001074,COG2739	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0203358_18	PF02255,TIGR00823,COG1447	N/A	N/A	N/A	N/A
UniRef90	UHGV-0203358_23	UniRef90_A0A1Q9JGI6	129.0	9.38e-36	RHH_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0203358_23	1033733.CAEK01000007_gene1628	108.0	1.76e-28	N/A	N/A
structural_annotation	UHGV-0203358_23	PF03869,NF041793,COG4691	N/A	N/A	N/A	N/A
PHROG	UHGV-0203358_24	phrog_4709	95.0	3.5e-28	N/A	unknown function
eggNOG-mapper	UHGV-0203358_24	1341157.RF007C_02660	89.4	1.53e-22	N/A	N/A
AcrCatalog	UHGV-0203358_24	cluster_3300	94.4	4.95e-29	NA	N/A
KOfam	UHGV-0203358_25	K06400	347.5	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0203358_25	phrog_95	349.3	0	integrase	integration and excision
UniRef90	UHGV-0203358_25	UniRef90_UPI001D0F283A	451.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0203358_25	718252.FP2_01160	450.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0203358_25	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0203358_25	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0203358_25	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0203358_25	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0203358_25	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-0203358_26	UniRef90_UPI000C8453B5	77.0	0.000000000000255	FxLYD domain-containing protein	N/A
eggNOG-mapper	UHGV-0203358_26	877415.JNJQ01000019_gene1779	129.0	6.5e-34	N/A	N/A
NCBIFam	UHGV-0203358_26	NF038353.1	N/A	N/A	FxLYD domain-containing protein	N/A
structural_annotation	UHGV-0203358_26	PF09624,PF12690,NF038353,COG5633	N/A	N/A	N/A	N/A
Pfam	UHGV-0203358_27	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
KOfam	UHGV-0203358_29	K22300	57.4	3.3e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0203358_29	phrog_4	50.5	0.000000000000049	transcriptional repressor	transcription regulation
UniRef90	UHGV-0203358_29	UniRef90_R9LY91	80.1	4.77e-16	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0203358_29	1235797.C816_03553	80.1	8e-17	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-0203358_29	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0203358_29	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0203358_29	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0203358_35	phrog_24518	65.5	7.9e-19	N/A	unknown function
PHROG	UHGV-0203358_37	phrog_434	180.5	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0203358_37	UniRef90_A0A1W1VQZ3	171.0	0	Putative phage-type endonuclease	N/A
eggNOG-mapper	UHGV-0203358_37	428125.CLOLEP_01823	164.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-0203358_37	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0203358_37	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0203358_37	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
PHROG	UHGV-0203358_38	phrog_23155	178.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0203358_38	478749.BRYFOR_07518	139.0	2.64e-37	N/A	N/A
PHROG	UHGV-0203358_39	phrog_5702	59.0	4.2e-17	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0203358_39	UniRef90_A0A6N4AKU7	97.4	5.07e-24	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0203358_39	1589270.A0A0B5A5Y0_9CAUD	86.7	1.45e-20	hydrolase activity, acting on ester bonds	N/A
Pfam	UHGV-0203358_39	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0203358_39	PF03838,MF_00130,NF002585,COG3331	N/A	N/A	N/A	N/A
PHROG	UHGV-0203358_40	phrog_2562	107.2	1.4e-31	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0203358_40	UniRef90_A0A3R6X983	155.0	1.43003e-41	N/A	N/A
eggNOG-mapper	UHGV-0203358_40	1507.HMPREF0262_00435	130.0	7.91e-33	N/A	N/A
Pfam	UHGV-0203358_40	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-0203358_40	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0203358_40	PF14297	N/A	N/A	N/A	N/A
KOfam	UHGV-0203358_41	K03111	141.3	9.99967e-42	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0203358_41	phrog_44	143.5	1.19951e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0203358_41	UniRef90_R6TSJ9	165.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0203358_41	1392491.JIAE01000001_gene2290	126.0	5e-35	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0203358_41	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0203358_41	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0203358_41	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0203358_41	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0203358_41	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
Pfam	UHGV-0203358_45	PF02796	N/A	N/A	Helix-turn-helix domain of resolvase	HTH_7
Pfam	UHGV-0203358_45	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
dbAPIS	UHGV-0203358_46	APIS006	N/A	N/A	Trigger programmed cell death (PCD) by P4 prophage.	N/A
COG	UHGV-0203358_46	COG5352	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0203358_46	PF01710,NF040595,COG3415	N/A	N/A	N/A	N/A
PHROG	UHGV-0203358_48	phrog_474	102.4	6.7e-30	phosphofructokinase	other
eggNOG-mapper	UHGV-0203358_48	428125.CLOLEP_01367	99.8	1.94e-24	N/A	N/A
Pfam	UHGV-0203358_48	PF19905	N/A	N/A	N/A	DUF6378
structural_annotation	UHGV-0203358_48	PF19905	N/A	N/A	N/A	N/A
KOfam	UHGV-0203358_49	K06941	84.0	1.4e-24	rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]	N/A
PHROG	UHGV-0203358_49	phrog_24834	265.7	0	N/A	unknown function
UniRef90	UHGV-0203358_49	UniRef90_UPI001C113EA9	561.0	0	Fe-S-oxidoreductase	N/A
eggNOG-mapper	UHGV-0203358_49	525919.Apre_0823	445.0	0	rRNA (adenine-C2-)-methyltransferase activity	N/A
COG	UHGV-0203358_49	COG0820	N/A	N/A	Adenine C2-methylase RlmN of 23S rRNA A2503 and tRNA A37	N/A
structural_annotation	UHGV-0203358_49	MF_01849,TIGR00048,COG0820	N/A	N/A	N/A	N/A
UniRef90	UHGV-0203358_50	UniRef90_A0A1I0VIB3	75.1	0.00000000000000249	MazG nucleotide pyrophosphohydrolase domain-containing protein	N/A
structural_annotation	UHGV-0203358_50	PF11998,COG5420	N/A	N/A	N/A	N/A
PHROG	UHGV-0203358_55	phrog_111	154.6	0	DNA methyltransferase	other
UniRef90	UHGV-0203358_55	UniRef90_UPI001B999604	190.0	0	adenine methyltransferase	N/A
eggNOG-mapper	UHGV-0203358_55	411468.CLOSCI_00567	186.0	0	DNA N-6-adenine-methyltransferase	N/A
PADLOC	UHGV-0203358_55	oMTase_00015	181.2	0	orphan methyltransferase	RM
Pfam	UHGV-0203358_55	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
NCBIFam	UHGV-0203358_55	TIGR01712.1	N/A	N/A	phage N-6-adenine-methyltransferase	N/A
structural_annotation	UHGV-0203358_55	PF05869,MF_03187,TIGR01712,COG2263	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0203358_61	445972.ANACOL_01835	48.5	0.00000318	N/A	N/A
structural_annotation	UHGV-0203358_61	PF06530,MF_00674,TIGR01636,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-0203358_62	phrog_21498	279.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0203358_62	78346.BRUM_0376	250.0	0	DNA binding	N/A
COG	UHGV-0203358_62	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0203358_62	PF05869,TIGR01712	N/A	N/A	N/A	N/A
PHROG	UHGV-0203358_63	phrog_119	62.8	5.6e-18	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0203358_63	UniRef90_UPI001958184D	108.0	1.82e-28	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0203358_63	1265845.PWEIH_00605	67.8	0.000000000000232	HNH endonuclease	N/A
Pfam	UHGV-0203358_63	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0203358_63	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0203358_64	phrog_13845	97.3	9e-29	N/A	unknown function
eggNOG-mapper	UHGV-0203358_64	1399942.U3PDR2_9CAUD	95.1	1.09e-23	N/A	N/A
Pfam	UHGV-0203358_64	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0203358_64	PF05119,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0203358_65	phrog_9	306.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0203358_65	UniRef90_A0A7C7DBW7	654.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0203358_65	349161.Dred_2607	640.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0203358_65	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0203358_65	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0203358_65	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0203358_65	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0203358_66	phrog_12	125.8	4.3e-38	portal protein	head and packaging
UniRef90	UHGV-0203358_66	UniRef90_G9YSB8	401.0	0	Phage portal protein, HK97 family	N/A
eggNOG-mapper	UHGV-0203358_66	349161.Dred_2606	272.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0203358_66	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0203358_66	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0203358_66	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0203358_66	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0203358_67	K01358	124.1	1.5e-36	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0203358_67	phrog_94	232.9	0	head maturation protease	head and packaging
UniRef90	UHGV-0203358_67	UniRef90_A0A1Y4BT12	288.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0203358_67	349161.Dred_2605	246.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0203358_67	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0203358_67	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0203358_67	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0203358_68	phrog_10	128.4	4.4e-38	major head protein	head and packaging
UniRef90	UHGV-0203358_68	UniRef90_UPI0018757887	526.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0203358_68	1235792.C808_00086	431.0	0	Phage capsid family	N/A
Pfam	UHGV-0203358_68	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0203358_68	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0203358_68	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0203358_68	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0203358_68	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0203358_69	phrog_749	70.3	2.1e-20	N/A	unknown function
UniRef90	UHGV-0203358_69	UniRef90_UPI001030B17C	65.5	0.00000000000991	head-tail connector protein	N/A
eggNOG-mapper	UHGV-0203358_69	1415774.U728_1251	72.0	0.00000000000000628	N/A	N/A
PHROG	UHGV-0203358_70	phrog_19734	114.5	6.1e-34	N/A	unknown function
eggNOG-mapper	UHGV-0203358_70	1235798.C817_04587	66.6	0.00000000000184	N/A	N/A
structural_annotation	UHGV-0203358_70	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0203358_71	1235798.C817_04588	89.7	8.29e-22	N/A	N/A
structural_annotation	UHGV-0203358_71	PF05657,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0203358_72	phrog_5	44.6	0.0000000000029	tail completion or Neck1 protein	connector
UniRef90	UHGV-0203358_72	UniRef90_A0A1C6FG30	135.0	2.59e-37	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0203358_72	908340.HMPREF9406_2573	114.0	7.29e-30	N/A	N/A
structural_annotation	UHGV-0203358_72	TIGR01725	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0203358	Yes	41,751	56	100	1