vOTU vOTU-047687

vOTU: vOTU-047687

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-047687
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-01882 → vGENUS-03080 → vSUBGEN-31634 → vOTU-047687
Host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Bulleidia
Host range breadth	Genus
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-0203658
Biosample ID	N/A
Genome length (bp)	34,050 bps
CheckV completeness	100.00% (Complete)
CDS count	48
CDS density	94.54%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Bulleidia	Total connections	3	Host agreement	100
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0203658_1	phrog_541	87.7	1e-25	head-tail adaptor	connector
eggNOG-mapper	UHGV-0203658_1	1123263.AUKY01000051_gene1078	259.0	0	N/A	N/A
PHROG	UHGV-0203658_2	phrog_8710	116.0	1.6e-34	N/A	unknown function
eggNOG-mapper	UHGV-0203658_2	1123263.AUKY01000051_gene1077	237.0	0	N/A	N/A
structural_annotation	UHGV-0203658_2	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0203658_3	phrog_556	55.0	0.0000000000000012	minor head protein	head and packaging
eggNOG-mapper	UHGV-0203658_3	1123263.AUKY01000051_gene1076	219.0	0	N/A	N/A
PHROG	UHGV-0203658_4	phrog_2595	91.6	6.4e-27	head-tail connector protein	connector
UniRef90	UHGV-0203658_4	UniRef90_UPI001D0627B3	127.0	2.87e-35	minor capsid protein	N/A
eggNOG-mapper	UHGV-0203658_4	1123263.AUKY01000051_gene1075	266.0	0	N/A	N/A
Pfam	UHGV-0203658_4	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0203658_4	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0203658_5	phrog_820	118.1	4.6e-35	major tail protein	tail
eggNOG-mapper	UHGV-0203658_5	1123263.AUKY01000051_gene1074	303.0	0	N/A	N/A
structural_annotation	UHGV-0203658_5	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0203658_6	phrog_8300	92.9	2.2e-27	N/A	unknown function
eggNOG-mapper	UHGV-0203658_6	1123263.AUKY01000051_gene1073	199.0	0	N/A	N/A
structural_annotation	UHGV-0203658_6	PF06896	N/A	N/A	N/A	N/A
PHROG	UHGV-0203658_7	phrog_8355	85.1	3.7e-25	N/A	unknown function
UniRef90	UHGV-0203658_7	UniRef90_UPI00059AA477	63.5	0.0000000000344	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0203658_7	1123263.AUKY01000051_gene1072	152.0	0	N/A	N/A
PHROG	UHGV-0203658_8	phrog_1535	272.7	0	tail length tape measure protein	tail
UniRef90	UHGV-0203658_8	UniRef90_A0A1C5TVU6	375.0	0	Phage-related minor tail protein	N/A
eggNOG-mapper	UHGV-0203658_8	1123263.AUKY01000051_gene1071	1256.0	0	tape measure	N/A
COG	UHGV-0203658_8	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0203658_8	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0203658_9	phrog_1194	56.9	3.2e-16	N/A	unknown function
eggNOG-mapper	UHGV-0203658_9	1123263.AUKY01000051_gene1070	251.0	0	N/A	N/A
structural_annotation	UHGV-0203658_9	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0203658_10	phrog_6616	50.6	0.000000000000016	tail protein	tail
eggNOG-mapper	UHGV-0203658_10	1123263.AUKY01000051_gene1069	1360.0	0	cellulase activity	N/A
COG	UHGV-0203658_10	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0203658_10	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0203658_11	1123263.AUKY01000046_gene480	155.0	1.7e-40	N/A	N/A
structural_annotation	UHGV-0203658_11	PF05895,MF_04116,NF010681,COG3291	N/A	N/A	N/A	N/A
Pfam	UHGV-0203658_12	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
KOfam	UHGV-0203658_13	K01447	65.6	8.8e-19	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0203658_13	phrog_7698	167.5	0	endolysin	lysis
UniRef90	UHGV-0203658_13	UniRef90_UPI000411C1B0	548.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0203658_13	1123263.AUKY01000023_gene1215	548.0	0	Cpl-7 lysozyme C-terminal domain protein	N/A
Pfam	UHGV-0203658_13	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0203658_13	PF08230	N/A	N/A	CW_7 repeat	CW_7
COG	UHGV-0203658_13	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-0203658_13	PF01510,MF_04111,NF008758,COG3023	N/A	N/A	N/A	N/A
PHROG	UHGV-0203658_15	phrog_443	60.1	5.9e-17	holin	lysis
UniRef90	UHGV-0203658_15	UniRef90_UPI0004232E58	134.0	8.06999e-40	holin	N/A
eggNOG-mapper	UHGV-0203658_15	1123263.AUKY01000046_gene485	134.0	1.35e-40	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0203658_15	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0203658_15	PF16945	N/A	N/A	N/A	N/A
KOfam	UHGV-0203658_16	K14059	187.1	0	int; integrase	N/A
PHROG	UHGV-0203658_16	phrog_1	189.1	0	integrase	integration and excision
UniRef90	UHGV-0203658_16	UniRef90_UPI00041838CC	690.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0203658_16	1123263.AUKY01000012_gene1957	690.0	0	Pfam:Integrase_AP2	N/A
Pfam	UHGV-0203658_16	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-0203658_16	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0203658_16	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0203658_16	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0203658_18	UniRef90_A0A223MI07	59.7	0.000000042	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0203658_18	428127.EUBDOL_01499	53.5	0.00000302	N/A	N/A
Pfam	UHGV-0203658_18	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0203658_18	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
Pfam	UHGV-0203658_19	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0203658_19	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0203658_19	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0203658_23	PF11372	N/A	N/A	N/A	N/A
KOfam	UHGV-0203658_26	K03546	67.6	1.3e-19	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-0203658_26	phrog_1499	465.8	0	N/A	unknown function
UniRef90	UHGV-0203658_26	UniRef90_D2MPK3	671.0	0	AAA_15 domain-containing protein	N/A
eggNOG-mapper	UHGV-0203658_26	679192.HMPREF9013_1319	671.0	0	AAA ATPase domain	N/A
PADLOC	UHGV-0203658_26	AAA_15	46.1	0.00000000000087	N/A	N/A
Pfam	UHGV-0203658_26	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-0203658_26	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0203658_26	PF11398,MF_00365,NF008121,COG0497	N/A	N/A	N/A	N/A
PHROG	UHGV-0203658_27	phrog_124	209.8	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0203658_27	UniRef90_UPI000C85E8A6	353.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0203658_27	679192.HMPREF9013_1318	657.0	0	AAA domain	N/A
Pfam	UHGV-0203658_27	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0203658_27	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-0203658_28	phrog_2698	105.2	3.2e-31	N/A	unknown function
UniRef90	UHGV-0203658_28	UniRef90_A0A415Z1P1	87.8	1.26e-18	N/A	N/A
eggNOG-mapper	UHGV-0203658_28	679192.HMPREF9013_1317	280.0	0	N/A	N/A
KOfam	UHGV-0203658_29	K17677	370.5	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-0203658_29	phrog_16	272.7	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0203658_29	UniRef90_D2MPK0	998.0	0	Helicase C-terminal domain protein	N/A
eggNOG-mapper	UHGV-0203658_29	679192.HMPREF9013_1316	998.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-0203658_29	mREase_IV_00005	137.7	9.79998e-41	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0203658_29	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0203658_29	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0203658_29	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0203658_29	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
KOfam	UHGV-0203658_30	K07505	365.1	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-0203658_30	phrog_2597	1035.2	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0203658_30	UniRef90_D2MPJ9	1333.0	0	Primase C terminal 2 (PriCT-2)	N/A
eggNOG-mapper	UHGV-0203658_30	679192.HMPREF9013_1315	1333.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-0203658_30	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-0203658_30	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-0203658_30	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-0203658_30	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
PHROG	UHGV-0203658_31	phrog_16687	101.8	2.5e-30	N/A	unknown function
eggNOG-mapper	UHGV-0203658_31	1123511.KB905868_gene197	64.3	0.0000000000022	N/A	N/A
KOfam	UHGV-0203658_33	K01160	59.1	1.3e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0203658_33	phrog_140	91.2	1.2e-26	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0203658_33	UniRef90_UPI000CF950FC	155.0	1.4013e-45	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0203658_33	1140001.I571_01822	115.0	2.88e-31	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0203658_33	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0203658_33	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0203658_33	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0203658_36	phrog_2044	86.8	1.3e-25	RNA polymerase beta subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0203658_36	UniRef90_A0A4D6BGB6	72.8	0.00000000000000382	Putative DNA-directed RNA polymerase	N/A
eggNOG-mapper	UHGV-0203658_36	536233.CLO_1806	82.0	1.43e-19	N/A	N/A
structural_annotation	UHGV-0203658_36	MF_00337,NF010671,COG1722	N/A	N/A	N/A	N/A
PHROG	UHGV-0203658_37	phrog_1891	188.6	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0203658_37	UniRef90_A0A3Q8C9D1	171.0	0	HNHc domain-containing protein	N/A
eggNOG-mapper	UHGV-0203658_37	1178537.BA1_15719	152.0	9.94922e-44	HNH endonuclease	N/A
Pfam	UHGV-0203658_37	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-0203658_37	PF13392	N/A	N/A	N/A	N/A
PHROG	UHGV-0203658_38	phrog_36	42.6	0.00000000001	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0203658_38	1123263.AUKY01000111_gene1089	222.0	0	N/A	N/A
structural_annotation	UHGV-0203658_38	PF04545,MF_00674,TIGR01636,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-0203658_39	phrog_3243	84.5	1.1e-24	N/A	unknown function
eggNOG-mapper	UHGV-0203658_39	428127.EUBDOL_01231	164.0	0	N/A	N/A
structural_annotation	UHGV-0203658_39	PF15072,MF_00075,TIGR00008,COG0361	N/A	N/A	N/A	N/A
KOfam	UHGV-0203658_40	K07474	97.8	2.1e-28	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0203658_40	phrog_51	108.9	4.4e-32	terminase small subunit	head and packaging
UniRef90	UHGV-0203658_40	UniRef90_UPI00138B0CFF	296.0	0	terminase small subunit	N/A
eggNOG-mapper	UHGV-0203658_40	1123263.AUKY01000111_gene1092	296.0	0	DNA packaging	N/A
Pfam	UHGV-0203658_40	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0203658_40	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0203658_40	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-0203658_41	K06909	96.2	4e-28	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0203658_41	phrog_2	67.9	2e-19	terminase large subunit	head and packaging
UniRef90	UHGV-0203658_41	UniRef90_D2MPJ1	912.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-0203658_41	1123263.AUKY01000111_gene1093	926.0	0	Phage terminase, large subunit, PBSX family	N/A
COG	UHGV-0203658_41	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0203658_41	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0203658_42	phrog_533	279.9	0	portal protein	head and packaging
UniRef90	UHGV-0203658_42	UniRef90_UPI001D011A41	481.0	0	capsid protein	N/A
eggNOG-mapper	UHGV-0203658_42	1123263.AUKY01000111_gene1094	983.0	0	N/A	N/A
structural_annotation	UHGV-0203658_42	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0203658_43	phrog_581	185.0	0	minor head protein	head and packaging
UniRef90	UHGV-0203658_43	UniRef90_A0A417V7Z4	384.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0203658_43	679192.HMPREF9013_1305	509.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0203658_43	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-0203658_43	PF03496	N/A	N/A	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
structural_annotation	UHGV-0203658_43	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0203658_46	phrog_2303	117.6	1.2e-34	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0203658_46	1123263.AUKY01000051_gene1081	384.0	0	N/A	N/A
PHROG	UHGV-0203658_47	phrog_422	265.8	0	major head protein	head and packaging
UniRef90	UHGV-0203658_47	UniRef90_W0U896	332.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0203658_47	1123263.AUKY01000051_gene1080	562.0	0	N/A	N/A
structural_annotation	UHGV-0203658_47	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0203658_48	1123263.AUKY01000051_gene1079	63.2	0.000000000000408	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0203658	Yes	34,050	40	100	1