vOTU vOTU-047695

vOTU: vOTU-047695

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-047695
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00229 → vSUBFAM-00674 → vGENUS-00821 → vSUBGEN-16072 → vOTU-047695
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger formicilis
Host range breadth	Species
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0203728
Biosample ID	SAMN10080883
Genome length (bp)	47,198 bps
CheckV completeness	100.00% (Complete)
CDS count	75
CDS density	86.51%
tRNA count	2
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger formicilis	Total connections	9	Host agreement	77.78
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0203728_1	UniRef90_A0A1V5X694	64.7	0.0000000000292	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-0203728_1	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
NCBIFam	UHGV-0203728_1	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-0203728_1	TIGR01560	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0203728_2	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0203728_4	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0203728_5	phrog_158	67.7	2.3e-19	major tail protein	tail
UniRef90	UHGV-0203728_5	UniRef90_UPI001D06C8CA	99.8	3.36e-24	phage tail protein	N/A
eggNOG-mapper	UHGV-0203728_5	1140002.I570_01436	69.3	0.000000000000479	Phage tail tube protein, TTP	N/A
structural_annotation	UHGV-0203728_5	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0203728_8	phrog_1535	78.9	1.5e-32	tail length tape measure protein	tail
UniRef90	UHGV-0203728_8	UniRef90_A0A1C5N853	78.6	0.0000000000404	Phage-related protein	N/A
eggNOG-mapper	UHGV-0203728_8	641107.CDLVIII_4361	89.0	0.00000000000000355	tail tape measure protein	N/A
COG	UHGV-0203728_8	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0203728_8	PF10145,TIGR01760	N/A	N/A	N/A	N/A
PHROG	UHGV-0203728_9	phrog_1194	43.0	0.0000000000065	N/A	unknown function
eggNOG-mapper	UHGV-0203728_9	445972.ANACOL_01864	83.6	6.38e-19	N/A	N/A
structural_annotation	UHGV-0203728_9	PF20458,TIGR02126,COG4718	N/A	N/A	N/A	N/A
PHROG	UHGV-0203728_10	phrog_18190	137.0	7.50003e-41	N/A	unknown function
UniRef90	UHGV-0203728_10	UniRef90_UPI000F53DFF3	117.0	6.74e-24	tail fiber domain-containing protein	N/A
eggNOG-mapper	UHGV-0203728_10	411471.SUBVAR_06932	213.0	0	N/A	N/A
structural_annotation	UHGV-0203728_10	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0203728_11	PF07761	N/A	N/A	N/A	N/A
KOfam	UHGV-0203728_12	K19304	52.6	0.0000000000000075	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
PHROG	UHGV-0203728_12	phrog_14988	45.5	0.0000000000011	peptidase	other
UniRef90	UHGV-0203728_12	UniRef90_A0A2V2FTH8	271.0	0	Peptidase M23	N/A
eggNOG-mapper	UHGV-0203728_12	665956.HMPREF1032_02708	238.0	0	N/A	N/A
Pfam	UHGV-0203728_12	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
structural_annotation	UHGV-0203728_12	PF01551,NF040883	N/A	N/A	N/A	N/A
PHROG	UHGV-0203728_15	phrog_134	43.6	0.0000000000037	N/A	unknown function
Pfam	UHGV-0203728_15	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
structural_annotation	UHGV-0203728_15	PF09693,TIGR01669	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0203728_16	PF17577	N/A	N/A	N/A	N/A
UniRef90	UHGV-0203728_17	UniRef90_A0A316NUT2	54.7	0.0000000757	Enolase	N/A
eggNOG-mapper	UHGV-0203728_17	742740.HMPREF9474_03522	51.2	0.000000295	N/A	N/A
structural_annotation	UHGV-0203728_17	PF06946	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0203728_21	PF04545,MF_00245,NF001074,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0203728_22	phrog_21718	43.3	0.0000000000045	N/A	unknown function
eggNOG-mapper	UHGV-0203728_22	1235790.C805_00058	70.9	0.000000000000514	N/A	N/A
PHROG	UHGV-0203728_23	phrog_16490	62.9	6.4e-18	N/A	unknown function
PHROG	UHGV-0203728_24	phrog_3377	182.7	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0203728_24	UniRef90_A0A3Q9RLP4	132.0	2.31e-35	Deoxyuridine 5'-triphosphate nucleotidohydrolase family protein	N/A
eggNOG-mapper	UHGV-0203728_24	397290.C810_05173	131.0	2.1e-35	N/A	N/A
structural_annotation	UHGV-0203728_25	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0203728_26	PF00210,MF_01441,NF011597,COG1528	N/A	N/A	N/A	N/A
PHROG	UHGV-0203728_31	phrog_8060	54.1	0.0000000000000031	N/A	unknown function
UniRef90	UHGV-0203728_31	UniRef90_X1MS36	55.8	0.000000397	HNHc domain-containing protein	N/A
eggNOG-mapper	UHGV-0203728_31	485913.Krac_6500	57.4	0.000000141	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-0203728_31	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0203728_31	COG0305	N/A	N/A	Replicative DNA helicase	N/A
eggNOG-mapper	UHGV-0203728_32	445973.CLOBAR_02331	63.2	0.00000000283	N/A	N/A
PHROG	UHGV-0203728_34	phrog_11947	48.5	0.00000000000012	N/A	unknown function
eggNOG-mapper	UHGV-0203728_34	272134.KB731324_gene2120	62.8	0.000000000153	N/A	N/A
PHROG	UHGV-0203728_37	phrog_298	71.3	4.1e-21	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0203728_37	UniRef90_UPI001ABE80F6	99.4	2.22e-22	PD-(D/E)XK nuclease family protein	N/A
eggNOG-mapper	UHGV-0203728_37	1218075.BAYA01000003_gene606	93.6	7.14e-21	N/A	N/A
structural_annotation	UHGV-0203728_37	PF12705,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-0203728_38	phrog_3377	101.1	1.1e-29	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0203728_38	500635.MITSMUL_03105	81.3	1.99e-16	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	N/A
COG	UHGV-0203728_38	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
eggNOG-mapper	UHGV-0203728_39	1449126.JQKL01000032_gene1263	124.0	5.26e-32	N/A	N/A
structural_annotation	UHGV-0203728_39	PF04404,TIGR00607,COG5055	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0203728_41	PF00436,MF_00984,NF005242,COG2965	N/A	N/A	N/A	N/A
PHROG	UHGV-0203728_42	phrog_28936	131.8	3.7e-39	N/A	unknown function
eggNOG-mapper	UHGV-0203728_42	573061.Clocel_3563	108.0	1.77e-26	N/A	N/A
structural_annotation	UHGV-0203728_42	PF11645,MF_01490,NF040854	N/A	N/A	N/A	N/A
PHROG	UHGV-0203728_43	phrog_16304	44.8	0.0000000000025	N/A	unknown function
eggNOG-mapper	UHGV-0203728_43	768706.Desor_0679	67.4	0.0000000000151	N/A	N/A
structural_annotation	UHGV-0203728_46	PF21076,MF_00707,NF001220,COG3830	N/A	N/A	N/A	N/A
KOfam	UHGV-0203728_47	K02314	194.7	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0203728_47	phrog_19	214.3	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0203728_47	UniRef90_A0A316NVS3	223.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-0203728_47	1007096.BAGW01000033_gene1616	135.0	1.25e-32	DnaB-like helicase N terminal domain	N/A
Pfam	UHGV-0203728_47	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0203728_47	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0203728_47	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0203728_47	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-0203728_49	phrog_244	74.4	1.6e-21	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0203728_49	1410650.JHWL01000003_gene2849	100.0	1.61e-25	N/A	N/A
Pfam	UHGV-0203728_50	PF13412	N/A	N/A	Winged helix-turn-helix DNA-binding	HTH_24
KOfam	UHGV-0203728_53	K09882	122.1	3.6e-36	cobS; cobaltochelatase CobS [EC:6.6.1.2]	N/A
PHROG	UHGV-0203728_53	phrog_249	174.2	0	porphyrin biosynthesis	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0203728_53	UniRef90_UPI001373859D	270.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0203728_53	402612.FP2177	192.0	0	AAA domain (dynein-related subfamily)	N/A
Pfam	UHGV-0203728_53	PF07728	N/A	N/A	AAA domain (dynein-related subfamily)	AAA_5
COG	UHGV-0203728_53	COG0714	N/A	N/A	MoxR-like ATPase	N/A
structural_annotation	UHGV-0203728_53	PF07728,MF_03121,TIGR02640,COG0714	N/A	N/A	N/A	N/A
PHROG	UHGV-0203728_54	phrog_1909	134.1	7.5e-40	N/A	unknown function
structural_annotation	UHGV-0203728_54	TIGR01651,COG4547	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0203728_57	PF21662,MF_00683,NF010673	N/A	N/A	N/A	N/A
Pfam	UHGV-0203728_62	PF03980	N/A	N/A	Nnf1	Nnf1
KOfam	UHGV-0203728_63	K03465	188.1	0	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	N/A
PHROG	UHGV-0203728_63	phrog_85	128.1	3.3e-38	thymidylate synthase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0203728_63	UniRef90_A0A2A7ALC5	246.0	0	Flavin-dependent thymidylate synthase	N/A
eggNOG-mapper	UHGV-0203728_63	657322.FPR_23400	227.0	0	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	N/A
Pfam	UHGV-0203728_63	PF02511	N/A	N/A	Thymidylate synthase complementing protein	Thy1
NCBIFam	UHGV-0203728_63	TIGR02170.1	N/A	N/A	FAD-dependent thymidylate synthase	N/A
COG	UHGV-0203728_63	COG1351	N/A	N/A	Thymidylate synthase ThyX, FAD-dependent family	N/A
structural_annotation	UHGV-0203728_63	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
PHROG	UHGV-0203728_64	phrog_236	53.7	0.0000000000000057	nucleotide kinase	other
eggNOG-mapper	UHGV-0203728_64	753084.F4YCQ0_9CAUD	65.1	0.0000000000534	N/A	N/A
KOfam	UHGV-0203728_66	K01520	126.2	2.7e-37	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-0203728_66	phrog_135	116.2	2.2e-34	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0203728_66	UniRef90_A0A6A2VG41	169.0	0	Deoxyuridine 5'-triphosphate nucleotidohydrolase	N/A
eggNOG-mapper	UHGV-0203728_66	1282887.AUJG01000016_gene1113	143.0	5.84005e-41	N/A	N/A
Pfam	UHGV-0203728_66	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-0203728_66	TIGR00576.1	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-0203728_66	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-0203728_66	PF00692,MF_00116,TIGR00576,COG0756	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0203728_68	PF17613,COG2139	N/A	N/A	N/A	N/A
PHROG	UHGV-0203728_69	phrog_428	73.4	3.6e-21	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0203728_69	1235802.C823_02837	98.2	2.36e-21	N/A	N/A
Pfam	UHGV-0203728_69	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0203728_69	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0203728_69	PF01978,TIGR04176,COG3355	N/A	N/A	N/A	N/A
UniRef90	UHGV-0203728_70	UniRef90_A0A373NQX9	114.0	1.1e-26	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0203728_70	1437425.CSEC_2012	83.2	0.00000000000000262	phage envelope protein	N/A
COG	UHGV-0203728_70	COG5562	N/A	N/A	N/A	N/A
PHROG	UHGV-0203728_71	phrog_38	185.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0203728_71	UniRef90_UPI00164E3A67	432.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0203728_71	1298920.KI911353_gene2682	286.0	0	TIGRFAM Phage	N/A
COG	UHGV-0203728_71	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0203728_71	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
PHROG	UHGV-0203728_73	phrog_64	181.7	0	portal protein	head and packaging
UniRef90	UHGV-0203728_73	UniRef90_UPI001D06C00B	377.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0203728_73	1121866.AUGK01000003_gene1429	327.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0203728_73	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0203728_73	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0203728_75	phrog_247	248.6	0	major head protein	head and packaging
UniRef90	UHGV-0203728_75	UniRef90_UPI001BA5448B	234.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-0203728_75	33035.JPJF01000106_gene3132	274.0	0	N/A	N/A
Pfam	UHGV-0203728_75	PF20036	N/A	N/A	Major capsid protein 13-like	Gp13-like
structural_annotation	UHGV-0203728_75	PF20036,MF_04113,TIGR04387,COG4653	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0203728	Yes	47,198	45	100	1
UHGV-1351742	No	48,022	45	100	1