vOTU vOTU-047998

vOTU: vOTU-047998

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-047998
Number of genomes	3
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00013 → vGENUS-06416 → vSUBGEN-26956 → vOTU-047998
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0205910
Biosample ID	SAMN00094479
Genome length (bp)	42,192 bps
CheckV completeness	100.00% (Complete)
CDS count	68
CDS density	91.58%
tRNA count	4
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	641	Host agreement	98.6
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0205910_2	phrog_36	72.8	5.9e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-0205910_2	UniRef90_A0A6N7TNN9	270.0	0	N/A	N/A
eggNOG-mapper	UHGV-0205910_2	748224.HMPREF9436_01463	77.4	4.47e-16	N/A	N/A
Pfam	UHGV-0205910_2	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-0205910_2	PF07374,TIGR01636	N/A	N/A	N/A	N/A
KOfam	UHGV-0205910_4	K01160	60.0	7.2e-17	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0205910_4	phrog_34	61.5	1.8e-17	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0205910_4	UniRef90_A0A6N7TND6	218.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0205910_4	875454.BAEW01000002_gene491	137.0	2.9e-40	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0205910_4	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0205910_4	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0205910_4	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0205910_5	phrog_3136	136.5	7.09996e-41	N/A	unknown function
UniRef90	UHGV-0205910_5	UniRef90_UPI001C02A61B	256.0	0	ASCH domain-containing protein	N/A
COG	UHGV-0205910_5	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0205910_5	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0205910_6	phrog_757	171.7	0	DNA methyltransferase	other
UniRef90	UHGV-0205910_6	UniRef90_UPI001C00B13F	442.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0205910_6	748224.HMPREF9436_03069	328.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0205910_6	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0205910_6	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0205910_7	PF11417	N/A	N/A	N/A	N/A
KOfam	UHGV-0205910_8	K02086	63.2	4.3e-18	dnaD; DNA replication protein	N/A
PHROG	UHGV-0205910_8	phrog_186	77.3	2.1e-22	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0205910_8	UniRef90_A0A844D5V0	221.0	0	DnaD domain protein	N/A
eggNOG-mapper	UHGV-0205910_8	748224.HMPREF9436_03357	65.9	0.000000000633	N/A	N/A
Pfam	UHGV-0205910_8	PF19808	N/A	N/A	N/A	DUF6291
Pfam	UHGV-0205910_8	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-0205910_8	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
structural_annotation	UHGV-0205910_8	PF19808,PF07261,TIGR01446,COG3935	N/A	N/A	N/A	N/A
KOfam	UHGV-0205910_9	K03111	141.7	7.79963e-42	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0205910_9	phrog_44	146.0	1.90577e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0205910_9	UniRef90_D4K451	219.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0205910_9	748224.HMPREF9436_00638	221.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0205910_9	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0205910_9	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0205910_9	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0205910_9	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0205910_9	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0205910_10	phrog_561	106.2	3e-31	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0205910_10	UniRef90_UPI0011C8A287	147.0	1.06e-40	recombinase RecT	N/A
eggNOG-mapper	UHGV-0205910_10	33035.JPJF01000071_gene4462	144.0	4.21001e-40	N/A	N/A
structural_annotation	UHGV-0205910_10	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0205910_12	PF14120	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0205910_14	PF09537	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0205910_15	PF12270,NF040944	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0205910_16	PF10743,NF033787	N/A	N/A	N/A	N/A
PHROG	UHGV-0205910_17	phrog_4433	40.5	0.000000000035	N/A	unknown function
COG	UHGV-0205910_17	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
PHROG	UHGV-0205910_18	phrog_15946	77.3	2.2e-23	N/A	unknown function
eggNOG-mapper	UHGV-0205910_18	1041147.AUFB01000014_gene330	54.3	0.00000103	N/A	N/A
PHROG	UHGV-0205910_19	phrog_4652	92.3	1.1e-27	N/A	unknown function
eggNOG-mapper	UHGV-0205910_19	397290.C810_01459	162.0	0	N/A	N/A
structural_annotation	UHGV-0205910_19	TIGR02582,COG1604	N/A	N/A	N/A	N/A
KOfam	UHGV-0205910_20	K07741	140.9	1.99993e-41	antB; anti-repressor protein	N/A
PHROG	UHGV-0205910_20	phrog_63	115.1	7.4e-34	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0205910_20	UniRef90_A0A6N7TLD1	285.0	0	Phage antirepressor Ant	N/A
eggNOG-mapper	UHGV-0205910_20	394503.Ccel_2852	218.0	0	Phage antirepressor protein	N/A
Pfam	UHGV-0205910_20	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
Pfam	UHGV-0205910_20	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0205910_20	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-0205910_20	PF03374,PF08346,TIGR02681,COG3561,COG3645	N/A	N/A	N/A	N/A
UniRef90	UHGV-0205910_21	UniRef90_UPI0018995761	75.9	8.19e-17	helix-turn-helix transcriptional regulator	N/A
structural_annotation	UHGV-0205910_21	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0205910_22	UniRef90_UPI001C020D87	106.0	1.83e-27	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0205910_22	1226322.HMPREF1545_00148	67.4	0.000000000000735	Transcriptional	N/A
Pfam	UHGV-0205910_22	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0205910_22	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0205910_22	PF12844,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0205910_23	PF21715,NF008122,COG1846	N/A	N/A	N/A	N/A
PHROG	UHGV-0205910_26	phrog_888	64.4	4.6e-35	N/A	unknown function
UniRef90	UHGV-0205910_26	UniRef90_A0A6N7TMA2	459.0	0	SHOCT domain-containing protein	N/A
eggNOG-mapper	UHGV-0205910_26	1415774.U728_165	85.1	5.86e-17	Short C-terminal domain	N/A
Pfam	UHGV-0205910_26	PF14471	N/A	N/A	N/A	DUF4428
Pfam	UHGV-0205910_26	PF09851	N/A	N/A	Short C-terminal domain	SHOCT
structural_annotation	UHGV-0205910_26	PF15947,PF14471	N/A	N/A	N/A	N/A
KOfam	UHGV-0205910_29	K15773	42.3	0.000000000014	hipB; HTH-type transcriptional regulator / antitoxin HipB	N/A
UniRef90	UHGV-0205910_29	UniRef90_A0A6N7TLT0	369.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0205910_29	266265.Bxe_A3948	52.4	0.000000941	Helix-turn-helix domain	N/A
Pfam	UHGV-0205910_29	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0205910_29	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0205910_29	PF13560,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0205910_30	K14059	152.6	4.2039e-45	int; integrase	N/A
PHROG	UHGV-0205910_30	phrog_1	190.3	0	integrase	integration and excision
UniRef90	UHGV-0205910_30	UniRef90_A0A174D176	534.0	0	Tyrosine recombinase XerD	N/A
eggNOG-mapper	UHGV-0205910_30	411471.SUBVAR_05137	258.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0205910_30	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0205910_30	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0205910_30	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0205910_32	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-0205910_33	phrog_20016	198.9	0	N/A	unknown function
UniRef90	UHGV-0205910_33	UniRef90_A0A285PT46	213.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0205910_33	1226322.HMPREF1545_00077	186.0	0	N/A	N/A
structural_annotation	UHGV-0205910_33	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0205910_34	phrog_16490	196.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0205910_34	397290.C810_01328	125.0	2.89e-31	N/A	N/A
PHROG	UHGV-0205910_35	phrog_22984	72.2	6.1e-21	N/A	unknown function
PHROG	UHGV-0205910_36	phrog_21718	89.0	5.4e-26	N/A	unknown function
eggNOG-mapper	UHGV-0205910_36	397290.C810_05210	79.3	1.61e-16	N/A	N/A
PHROG	UHGV-0205910_37	phrog_3754	100.0	2e-29	N/A	unknown function
eggNOG-mapper	UHGV-0205910_37	1235790.C805_00054	106.0	5.11e-28	N/A	N/A
KOfam	UHGV-0205910_39	K23779	58.7	1.4e-16	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
PHROG	UHGV-0205910_39	phrog_1373	42.5	0.0000000000079	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0205910_39	944479.JQLX01000018_gene150	56.6	0.00000012	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0205910_39	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0205910_39	COG0662	N/A	N/A	Mannose-6-phosphate isomerase, cupin superfamily	N/A
structural_annotation	UHGV-0205910_39	PF01381,TIGR03070,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0205910_42	K24213	77.1	1.4e-22	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	N/A
PHROG	UHGV-0205910_42	phrog_5073	96.4	2e-28	tail fiber protein	tail
UniRef90	UHGV-0205910_42	UniRef90_UPI0018835F0C	329.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-0205910_42	411483.FAEPRAA2165_00757	167.0	4.13383e-43	N/A	N/A
Pfam	UHGV-0205910_42	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
PHROG	UHGV-0205910_43	phrog_15303	117.9	4.5e-35	N/A	unknown function
Pfam	UHGV-0205910_43	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
KOfam	UHGV-0205910_45	K07273	177.8	0	acm; lysozyme	N/A
PHROG	UHGV-0205910_45	phrog_291	149.9	1.82169e-44	endolysin	lysis
UniRef90	UHGV-0205910_45	UniRef90_E2ZES5	330.0	0	Glycosyl hydrolase family 25	N/A
eggNOG-mapper	UHGV-0205910_45	748224.HMPREF9436_00154	330.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0205910_45	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0205910_45	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0205910_45	PF01183,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0205910_46	phrog_1382	49.4	0.000000000000033	N/A	unknown function
eggNOG-mapper	UHGV-0205910_46	411468.CLOSCI_00272	46.2	0.00000328	N/A	N/A
eggNOG-mapper	UHGV-0205910_48	748224.HMPREF9436_03323	82.4	0.00000000000000251	COG NOG18825 non supervised orthologous group	N/A
PHROG	UHGV-0205910_49	phrog_3558	211.7	0	tail protein	tail
UniRef90	UHGV-0205910_49	UniRef90_UPI001C01D15B	149.0	7.39e-35	phage tail protein	N/A
eggNOG-mapper	UHGV-0205910_49	1235799.C818_04233	63.2	0.00000011	Prophage endopeptidase tail	N/A
Pfam	UHGV-0205910_49	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
COG	UHGV-0205910_49	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0205910_49	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
UniRef90	UHGV-0205910_50	UniRef90_A0A417QGC1	127.0	1.6e-32	MtfA protein	N/A
eggNOG-mapper	UHGV-0205910_50	411490.ANACAC_00709	107.0	1.88e-25	phage tail	N/A
COG	UHGV-0205910_50	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0205910_50	PF05709,PF02408,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0205910_51	phrog_28775	128.8	3.7e-38	tail length tape measure protein	tail
UniRef90	UHGV-0205910_51	UniRef90_A0A6N7TLD3	1165.0	0	Tape measure protein	N/A
eggNOG-mapper	UHGV-0205910_51	1492737.FEM08_12070	137.0	6.51e-31	tape measure	N/A
Pfam	UHGV-0205910_51	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0205910_51	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0205910_51	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0205910_51	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0205910_54	phrog_885	69.3	4.4e-20	major tail protein	tail
eggNOG-mapper	UHGV-0205910_54	1111121.HMPREF1247_0789	168.0	0	N/A	N/A
structural_annotation	UHGV-0205910_54	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0205910_55	PF13554	N/A	N/A	N/A	N/A
PHROG	UHGV-0205910_56	phrog_17977	40.7	0.00000000003	N/A	unknown function
UniRef90	UHGV-0205910_56	UniRef90_A0A844DHJ8	120.0	8.09e-33	Phage head closure protein	N/A
structural_annotation	UHGV-0205910_56	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0205910_58	phrog_544	109.0	4.4e-32	major head protein	head and packaging
UniRef90	UHGV-0205910_58	UniRef90_A0A1C6B5R0	322.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0205910_58	476272.RUMHYD_01776	287.0	0	N/A	N/A
structural_annotation	UHGV-0205910_58	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0205910_59	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0205910_61	phrog_5	47.5	0.00000000000041	tail completion or Neck1 protein	connector
UniRef90	UHGV-0205910_61	UniRef90_A0A6N7TNP6	301.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0205910_61	1123309.AQYB01000018_gene814	93.6	1.99e-22	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0205910_61	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0205910_61	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0205910_63	phrog_8680	185.5	0	N/A	unknown function
UniRef90	UHGV-0205910_63	UniRef90_A0A6N7TNE8	348.0	0	N/A	N/A
eggNOG-mapper	UHGV-0205910_63	1423790.BN53_04265	157.0	1.03696e-43	Belongs to the N(4) N(6)-methyltransferase family	N/A
Pfam	UHGV-0205910_63	PF14386	N/A	N/A	N/A	DUF4417
COG	UHGV-0205910_63	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0205910_63	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-0205910_64	phrog_2468	78.3	5.7e-23	head morphogenesis	head and packaging
UniRef90	UHGV-0205910_64	UniRef90_A0A6N7TLR7	617.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0205910_64	1504822.CCNO01000013_gene286	108.0	3.49e-23	cell adhesion	N/A
Pfam	UHGV-0205910_64	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0205910_64	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0205910_64	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0205910_66	phrog_64	126.8	7.8e-38	portal protein	head and packaging
UniRef90	UHGV-0205910_66	UniRef90_A0A6N7TNT3	894.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0205910_66	642492.Clole_2764	83.2	0.0000000000000306	phage portal protein, SPP1	N/A
Pfam	UHGV-0205910_66	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0205910_66	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-0205910_67	K06909	142.5	3.59994e-42	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0205910_67	phrog_10250	176.6	0	N/A	unknown function
UniRef90	UHGV-0205910_67	UniRef90_A0A844D8I4	845.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0205910_67	411490.ANACAC_00783	485.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0205910_67	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0205910_67	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0205910_67	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0205910_67	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-0205910_68	UniRef90_UPI0018CC2891	115.0	5.89e-30	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0205910_68	1226322.HMPREF1545_00042	113.0	7.5e-30	N/A	N/A
structural_annotation	UHGV-0205910_68	PF04218	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0205910	Yes	42,192	55	100	1
UHGV-1417341	No	45,225	55	100	1
UHGV-1828149	No	15,961	56	38	1