vOTU vOTU-048050

vOTU: vOTU-048050

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-048050
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00753 → vGENUS-01189 → vSUBGEN-30280 → vOTU-048050
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → CAG-272 → Flemingibacterium → Flemingibacterium sp900546315
Host range breadth	Species
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0206360
Biosample ID	SAMN11252272
Genome length (bp)	39,867 bps
CheckV completeness	100.00% (Complete)
CDS count	60
CDS density	93.93%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → CAG-272 → Flemingibacterium → Flemingibacterium sp900546315	Total connections	5	Host agreement	80
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0206360_1	K18830	58.6	8.3e-17	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0206360_1	phrog_8	43.5	0.0000000000018	transcriptional regulator	transcription regulation
UniRef90	UHGV-0206360_1	UniRef90_A0A1C5PSE5	114.0	3.12e-30	Predicted transcriptional regulator	N/A
eggNOG-mapper	UHGV-0206360_1	1235790.C805_00012	105.0	1.43e-27	Helix-turn-helix domain	N/A
Pfam	UHGV-0206360_1	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0206360_1	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0206360_1	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0206360_4	phrog_21607	44.6	0.0000000000021	N/A	unknown function
Pfam	UHGV-0206360_5	PF01850	N/A	N/A	PIN domain	PIN
structural_annotation	UHGV-0206360_7	PF21291,NF041951,COG1513	N/A	N/A	N/A	N/A
PHROG	UHGV-0206360_9	phrog_253	112.8	1.8e-34	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0206360_9	UniRef90_R6R2R3	123.0	8.45e-32	Siphovirus Gp157	N/A
eggNOG-mapper	UHGV-0206360_9	1008459.TASI_0420	77.0	0.00000000000000358	Siphovirus Gp157	N/A
Pfam	UHGV-0206360_9	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0206360_9	PF05565,NF002139	N/A	N/A	N/A	N/A
PHROG	UHGV-0206360_10	phrog_1366	246.7	0	N/A	unknown function
UniRef90	UHGV-0206360_10	UniRef90_R6S946	372.0	0	AAA domain-containing protein	N/A
eggNOG-mapper	UHGV-0206360_10	1410670.JHXF01000015_gene2269	352.0	0	AAA domain	N/A
Pfam	UHGV-0206360_10	PF13479	N/A	N/A	AAA domain	AAA_24
COG	UHGV-0206360_10	COG0468	N/A	N/A	RecA/RadA recombinase	N/A
structural_annotation	UHGV-0206360_10	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
KOfam	UHGV-0206360_11	K19789	326.3	0	radD; DNA repair protein RadD	N/A
PHROG	UHGV-0206360_11	phrog_16	281.1	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0206360_11	UniRef90_A0A348ZC82	613.0	0	Helicase	N/A
eggNOG-mapper	UHGV-0206360_11	1410670.JHXF01000015_gene2270	568.0	0	helicase	N/A
PADLOC	UHGV-0206360_11	mREase_IV_00005	115.7	7.3e-35	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0206360_11	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0206360_11	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0206360_11	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0206360_11	PF04851,PF00271,MF_01489,TIGR04095,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-0206360_12	phrog_5702	79.6	1.9e-23	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0206360_12	UniRef90_UPI0006D7D3A3	118.0	1.25e-32	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0206360_12	985762.SAGN_11317	117.0	5.8e-33	VRR-NUC domain	N/A
Pfam	UHGV-0206360_12	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0206360_12	PF03838,MF_00130,NF002585,COG3331	N/A	N/A	N/A	N/A
PHROG	UHGV-0206360_13	phrog_378	82.4	7.4e-24	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0206360_13	UniRef90_UPI0006852132	92.4	2.84e-20	N/A	N/A
eggNOG-mapper	UHGV-0206360_13	1410670.JHXF01000015_gene2272	92.4	4.77e-21	N/A	N/A
Pfam	UHGV-0206360_13	PF05037	N/A	N/A	N/A	DUF669
structural_annotation	UHGV-0206360_13	PF05037,NF004948	N/A	N/A	N/A	N/A
KOfam	UHGV-0206360_14	K06919	110.2	1.9e-32	K06919; putative DNA primase/helicase	N/A
PHROG	UHGV-0206360_14	phrog_1829	810.7	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0206360_14	UniRef90_A0A6N4ALN1	878.0	0	SF3 helicase domain-containing protein	N/A
eggNOG-mapper	UHGV-0206360_14	1410670.JHXF01000015_gene2274	735.0	0	Phage plasmid primase, P4 family	N/A
Pfam	UHGV-0206360_14	PF08706	N/A	N/A	D5 N terminal like	D5_N
Pfam	UHGV-0206360_14	PF19263	N/A	N/A	N/A	DUF5906
Pfam	UHGV-0206360_14	PF03288	N/A	N/A	Poxvirus D5 protein-like	Pox_D5
NCBIFam	UHGV-0206360_14	TIGR01613.1	N/A	N/A	phage/plasmid primase, P4 family	N/A
COG	UHGV-0206360_14	COG3378	N/A	N/A	DNA primase, phage- or plasmid-associated	N/A
structural_annotation	UHGV-0206360_14	PF08706,PF05272,PF02257,MF_04000,NF011296,COG3378,COG4983	N/A	N/A	N/A	N/A
PHROG	UHGV-0206360_23	phrog_111	155.0	0	DNA methyltransferase	other
UniRef90	UHGV-0206360_23	UniRef90_UPI001B999604	191.0	0	adenine methyltransferase	N/A
eggNOG-mapper	UHGV-0206360_23	411468.CLOSCI_00567	187.0	0	DNA N-6-adenine-methyltransferase	N/A
PADLOC	UHGV-0206360_23	oMTase_00015	182.0	0	orphan methyltransferase	RM
Pfam	UHGV-0206360_23	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
NCBIFam	UHGV-0206360_23	TIGR01712.1	N/A	N/A	phage N-6-adenine-methyltransferase	N/A
structural_annotation	UHGV-0206360_23	PF05869,MF_03187,TIGR01712,COG2263	N/A	N/A	N/A	N/A
PHROG	UHGV-0206360_24	phrog_36	61.7	1.5e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0206360_24	UniRef90_UPI001D05F87A	103.0	9.66e-26	RNA polymerase subunit sigma-24	N/A
eggNOG-mapper	UHGV-0206360_24	1235835.C814_01174	101.0	8.74e-26	N/A	N/A
structural_annotation	UHGV-0206360_24	PF07374	N/A	N/A	N/A	N/A
KOfam	UHGV-0206360_25	K07474	136.8	2.29999e-40	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0206360_25	phrog_51	121.8	1.3e-36	terminase small subunit	head and packaging
UniRef90	UHGV-0206360_25	UniRef90_A0A372V657	122.0	6.97e-33	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0206360_25	1095750.HMPREF9970_1030	117.0	1.36e-31	Terminase small subunit	N/A
Pfam	UHGV-0206360_25	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0206360_25	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0206360_25	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-0206360_26	K06909	85.9	4.9e-25	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0206360_26	phrog_2	101.0	2e-29	terminase large subunit	head and packaging
UniRef90	UHGV-0206360_26	UniRef90_UPI00189AB5B3	632.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0206360_26	1304866.K413DRAFT_3034	548.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0206360_26	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0206360_26	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0206360_26	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0206360_27	phrog_533	324.4	0	portal protein	head and packaging
UniRef90	UHGV-0206360_27	UniRef90_UPI00189C53D6	495.0	0	phage capsid protein	N/A
eggNOG-mapper	UHGV-0206360_27	1304866.K413DRAFT_3035	428.0	0	N/A	N/A
structural_annotation	UHGV-0206360_27	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0206360_28	phrog_581	282.2	0	minor head protein	head and packaging
UniRef90	UHGV-0206360_28	UniRef90_UPI00189CAB20	361.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0206360_28	742765.HMPREF9457_02121	298.0	0	N/A	N/A
Pfam	UHGV-0206360_28	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0206360_28	COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0206360_29	phrog_29156	83.1	2.7e-24	N/A	unknown function
PHROG	UHGV-0206360_30	phrog_194	102.9	3.7e-30	head scaffolding protein	head and packaging
UniRef90	UHGV-0206360_30	UniRef90_A0A2N0ULW9	198.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0206360_30	411461.DORFOR_01166	120.0	1.09e-31	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0206360_30	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0206360_30	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0206360_31	phrog_422	234.8	0	major head protein	head and packaging
eggNOG-mapper	UHGV-0206360_31	693746.OBV_18090	377.0	0	N/A	N/A
structural_annotation	UHGV-0206360_31	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0206360_32	phrog_541	62.7	5.4e-18	head-tail adaptor	connector
UniRef90	UHGV-0206360_32	UniRef90_A0A371AQT0	80.9	2.64e-17	N/A	N/A
eggNOG-mapper	UHGV-0206360_32	1449050.JNLE01000003_gene3888	73.9	0.00000000000000216	N/A	N/A
PHROG	UHGV-0206360_33	phrog_3366	41.6	0.0000000000068	N/A	unknown function
eggNOG-mapper	UHGV-0206360_33	1449050.JNLE01000003_gene3887	70.1	0.000000000000074	N/A	N/A
Pfam	UHGV-0206360_33	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0206360_33	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-0206360_34	phrog_556	138.3	1.99993e-41	minor head protein	head and packaging
UniRef90	UHGV-0206360_34	UniRef90_UPI001B3C5A2B	169.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0206360_34	1449050.JNLE01000003_gene3886	142.0	1.82001e-41	N/A	N/A
Pfam	UHGV-0206360_34	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0206360_34	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0206360_35	phrog_3266	91.7	6.2e-27	tail completion	connector
eggNOG-mapper	UHGV-0206360_35	1449050.JNLE01000003_gene3885	111.0	2.81e-29	N/A	N/A
structural_annotation	UHGV-0206360_35	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0206360_36	phrog_3099	155.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0206360_36	1304866.K413DRAFT_3043	194.0	0	N/A	N/A
structural_annotation	UHGV-0206360_36	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0206360_37	phrog_11299	101.2	4.3e-30	N/A	unknown function
eggNOG-mapper	UHGV-0206360_37	1160721.RBI_II00531	84.3	8.85e-19	N/A	N/A
structural_annotation	UHGV-0206360_37	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0206360_38	phrog_706	127.1	1.2e-37	N/A	unknown function
UniRef90	UHGV-0206360_38	UniRef90_UPI00051C36A4	178.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0206360_38	1449050.JNLE01000003_gene3882	177.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0206360_38	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0206360_38	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0206360_39	phrog_58	121.7	6.7e-36	tail length tape measure protein	tail
UniRef90	UHGV-0206360_39	UniRef90_A0A2N0UYY1	331.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0206360_39	1160721.RBI_II00528	347.0	0	Phage tail tape measure protein, TP901 family	N/A
COG	UHGV-0206360_39	COG1006	N/A	N/A	Multisubunit Na+/H+ antiporter, MnhC subunit	N/A
structural_annotation	UHGV-0206360_39	PF05537,TIGR01760,COG3941	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0206360_40	693746.OBV_18200	93.2	1.26e-22	N/A	N/A
structural_annotation	UHGV-0206360_40	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0206360_41	phrog_13879	179.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0206360_41	411902.CLOBOL_00124	303.0	0	N/A	N/A
structural_annotation	UHGV-0206360_41	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-0206360_42	phrog_18725	60.8	2.1e-17	N/A	unknown function
eggNOG-mapper	UHGV-0206360_42	756499.Desde_2424	94.7	1.24e-22	N/A	N/A
UniRef90	UHGV-0206360_45	UniRef90_A0A090I2J2	54.7	0.00000112	Chitin-binding domain of Chi A1-like proteins	N/A
structural_annotation	UHGV-0206360_45	PF14600	N/A	N/A	N/A	N/A
PHROG	UHGV-0206360_46	phrog_4105	79.2	4.2e-23	N/A	unknown function
eggNOG-mapper	UHGV-0206360_46	397288.C806_00056	87.0	1.06e-20	N/A	N/A
PHROG	UHGV-0206360_47	phrog_1419	50.4	0.000000000000013	tail protein	tail
eggNOG-mapper	UHGV-0206360_47	1519439.JPJG01000060_gene1892	80.1	0.00000000000158	Collagen triple helix repeat (20 copies)	N/A
COG	UHGV-0206360_47	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
KOfam	UHGV-0206360_49	K07273	158.9	0	acm; lysozyme	N/A
PHROG	UHGV-0206360_49	phrog_291	133.6	1.8e-39	endolysin	lysis
UniRef90	UHGV-0206360_49	UniRef90_Q8KU11	130.0	1.19e-32	LycA	N/A
eggNOG-mapper	UHGV-0206360_49	445335.CBN_0828	130.0	2e-33	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0206360_49	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0206360_49	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-0206360_49	PF01183,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0206360_50	phrog_6918	57.6	1.7e-16	holin	lysis
UniRef90	UHGV-0206360_50	UniRef90_U2S4Z6	57.0	0.0000000423	Phage holin, LL-H family	N/A
eggNOG-mapper	UHGV-0206360_50	1226322.HMPREF1545_03575	57.0	0.0000000071	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-0206360_50	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
structural_annotation	UHGV-0206360_50	PF09682,TIGR01673	N/A	N/A	N/A	N/A
UniRef90	UHGV-0206360_51	UniRef90_A0A843IZ65	67.4	0.000000000000274	Sigma70_r4 domain-containing protein	N/A
structural_annotation	UHGV-0206360_51	PF04545,MF_00245,NF001074,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0206360_53	phrog_16490	60.3	4.1e-17	N/A	unknown function
eggNOG-mapper	UHGV-0206360_53	641112.ACOK01000103_gene525	61.6	0.00000000947	N/A	N/A
structural_annotation	UHGV-0206360_54	PF18573,NF033147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0206360_56	1408324.JNJK01000028_gene1590	78.6	0.0000000000000136	N/A	N/A
structural_annotation	UHGV-0206360_57	PF16734,PF01402	N/A	N/A	N/A	N/A
KOfam	UHGV-0206360_58	K14059	191.7	0	int; integrase	N/A
PHROG	UHGV-0206360_58	phrog_1	163.0	0	integrase	integration and excision
UniRef90	UHGV-0206360_58	UniRef90_UPI00195DAA7A	189.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0206360_58	1226322.HMPREF1545_00144	181.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0206360_58	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0206360_58	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0206360_58	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0206360_59	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0206360	Yes	39,867	54	100	1