vOTU vOTU-048094

vOTU: vOTU-048094

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-048094
Number of genomes	13
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00060 → vSUBFAM-03507 → vGENUS-10024 → vSUBGEN-12620 → vOTU-048094
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_F → Ruminococcus_F champanellensis
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0206637
Biosample ID	SAMN00088016
Genome length (bp)	34,759 bps
CheckV completeness	100.00% (Complete)
CDS count	48
CDS density	94.47%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_F → Ruminococcus_F champanellensis	Total connections	27	Host agreement	92.59
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_F → Ruminococcus_F champanellensis	Total connections	14	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0206637_1	K01356	142.3	5.09933e-42	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0206637_1	phrog_4	134.5	9.90001e-40	transcriptional repressor	transcription regulation
UniRef90	UHGV-0206637_1	UniRef90_D4LDS3	306.0	0	SOS-response transcriptional repressors (RecA-mediated autopeptidases)	N/A
eggNOG-mapper	UHGV-0206637_1	1121423.JONT01000002_gene2372	240.0	0	Peptidase S24-like	N/A
Pfam	UHGV-0206637_1	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0206637_1	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0206637_1	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0206637_1	PF00717,PF12844,MF_00015,TIGR00498,TIGR03070,COG1974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0206637_2	411468.CLOSCI_02275	58.5	0.000000404	N/A	N/A
structural_annotation	UHGV-0206637_2	PF14020	N/A	N/A	N/A	N/A
KOfam	UHGV-0206637_3	K06400	344.4	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0206637_3	phrog_95	342.5	0	integrase	integration and excision
UniRef90	UHGV-0206637_3	UniRef90_A0A315Y0V2	541.0	0	DNA invertase Pin-like site-specific DNA recombinase	N/A
eggNOG-mapper	UHGV-0206637_3	537013.CLOSTMETH_01697	457.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0206637_3	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0206637_3	PF07508	N/A	N/A	Recombinase	Recombinase
COG	UHGV-0206637_3	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0206637_3	PF00239,PF07508,PF13408,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-0206637_4	phrog_1863	68.1	7.7e-20	N/A	unknown function
eggNOG-mapper	UHGV-0206637_4	1235797.C816_02840	98.6	1.52e-25	N/A	N/A
KOfam	UHGV-0206637_5	K08640	83.8	1.9e-27	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-0206637_5	phrog_2649	83.8	2e-24	endolysin	lysis
UniRef90	UHGV-0206637_5	UniRef90_UPI0006D154CD	467.0	0	peptidoglycan-binding protein	N/A
eggNOG-mapper	UHGV-0206637_5	1341157.RF007C_02545	157.0	4.76441e-43	hydrolase, family 25	N/A
Pfam	UHGV-0206637_5	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
Pfam	UHGV-0206637_5	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0206637_5	COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0206637_5	PF05951,PF01471,COG3108,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-0206637_6	phrog_13256	69.7	2.7e-20	N/A	unknown function
eggNOG-mapper	UHGV-0206637_6	641112.ACOK01000073_gene2912	73.2	1.22e-16	N/A	N/A
PHROG	UHGV-0206637_8	phrog_1067	206.2	0	minor head protein	head and packaging
UniRef90	UHGV-0206637_8	UniRef90_UPI0011C788B1	649.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0206637_8	1567011.A0A0A7RUI9_9VIRU	184.0	0	N-acetylmuramoyl-L-alanine amidase activity	N/A
Pfam	UHGV-0206637_8	PF18994	N/A	N/A	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
Pfam	UHGV-0206637_8	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0206637_8	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
structural_annotation	UHGV-0206637_8	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0206637_10	phrog_33	47.3	0.00000000000051	distal tail protein Dit	tail
UniRef90	UHGV-0206637_10	UniRef90_R5ADI0	95.1	3.46e-20	Putative phage tail component	N/A
eggNOG-mapper	UHGV-0206637_10	1121342.AUCO01000004_gene648	83.2	1.95e-16	tail component	N/A
COG	UHGV-0206637_10	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0206637_10	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0206637_11	phrog_1272	247.8	0	tail length tape measure protein	tail
UniRef90	UHGV-0206637_11	UniRef90_UPI001C0A6D30	315.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0206637_11	428125.CLOLEP_00174	280.0	0	tail tape measure protein, TP901	N/A
Pfam	UHGV-0206637_11	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0206637_11	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0206637_11	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0206637_11	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0206637_12	phrog_706	137.5	8.00001e-41	N/A	unknown function
UniRef90	UHGV-0206637_12	UniRef90_A0A143ZUS4	124.0	3.15e-32	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0206637_12	428125.CLOLEP_01787	102.0	9.16e-25	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0206637_12	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0206637_12	PF06854	N/A	N/A	N/A	N/A
UniRef90	UHGV-0206637_13	UniRef90_A0A143ZVS5	67.8	0.00000000000843	Cse1 domain-containing protein	N/A
structural_annotation	UHGV-0206637_13	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0206637_14	phrog_820	116.3	2.1e-34	major tail protein	tail
UniRef90	UHGV-0206637_14	UniRef90_A0A355UYH2	226.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-0206637_14	1231057.AMGD01000018_gene3613	114.0	2.88e-29	Belongs to the glycosyl hydrolase family 6	N/A
Pfam	UHGV-0206637_14	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
COG	UHGV-0206637_14	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0206637_15	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0206637_16	phrog_556	75.8	3.7e-22	minor head protein	head and packaging
UniRef90	UHGV-0206637_16	UniRef90_A0A7T9LSG3	80.1	1.07e-16	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0206637_16	935836.JAEL01000021_gene1490	57.0	0.0000000176	Minor capsid protein	N/A
Pfam	UHGV-0206637_16	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0206637_16	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0206637_17	phrog_793	79.4	4.3e-23	head-tail adaptor	connector
UniRef90	UHGV-0206637_17	UniRef90_UPI00093A08E9	105.0	4.56e-27	putative minor capsid protein	N/A
eggNOG-mapper	UHGV-0206637_17	997296.PB1_16194	61.2	0.00000000012	Minor capsid protein	N/A
Pfam	UHGV-0206637_17	PF10665	N/A	N/A	Minor capsid protein	Minor_capsid_1
COG	UHGV-0206637_17	COG5652	N/A	N/A	VanZ-like family protein (function unknown)	N/A
structural_annotation	UHGV-0206637_17	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0206637_18	phrog_541	77.9	1.1e-22	head-tail adaptor	connector
UniRef90	UHGV-0206637_18	UniRef90_R5RS10	67.4	0.00000000000657	Protein gp8	N/A
eggNOG-mapper	UHGV-0206637_18	935836.JAEL01000086_gene50	61.6	0.000000000186	N/A	N/A
PHROG	UHGV-0206637_19	phrog_267	69.7	8.4e-21	major head protein	head and packaging
UniRef90	UHGV-0206637_19	UniRef90_A0A1C6GMA6	488.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0206637_19	718252.FP2_06660	272.0	0	N/A	N/A
structural_annotation	UHGV-0206637_19	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0206637_20	phrog_2303	75.9	8.4e-22	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0206637_20	764299.STRIC_2530	66.6	0.0000000000385	N/A	N/A
structural_annotation	UHGV-0206637_20	PF10788	N/A	N/A	N/A	N/A
PHROG	UHGV-0206637_22	phrog_581	318.6	0	minor head protein	head and packaging
UniRef90	UHGV-0206637_22	UniRef90_A0A174ZWV0	473.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0206637_22	428125.CLOLEP_01802	261.0	0	N/A	N/A
Pfam	UHGV-0206637_22	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0206637_22	COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0206637_23	phrog_533	349.7	0	portal protein	head and packaging
UniRef90	UHGV-0206637_23	UniRef90_A0A349GP64	566.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-0206637_23	428125.CLOLEP_01803	306.0	0	N/A	N/A
Pfam	UHGV-0206637_23	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0206637_23	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0206637_24	K06909	115.9	5e-34	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0206637_24	phrog_2	121.0	1.7e-35	terminase large subunit	head and packaging
UniRef90	UHGV-0206637_24	UniRef90_A0A1C6FMV1	617.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-0206637_24	1120998.AUFC01000030_gene2231	361.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0206637_24	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0206637_24	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0206637_24	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0206637_24	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0206637_25	phrog_2412	43.1	0.000000000000026	N/A	unknown function
eggNOG-mapper	UHGV-0206637_25	1232449.BAHV02000018_gene1532	51.6	0.0000021	N/A	N/A
PHROG	UHGV-0206637_26	phrog_36	79.9	3.8e-23	transcriptional regulator	transcription regulation
UniRef90	UHGV-0206637_26	UniRef90_UPI000490E1E4	67.4	0.0000000000201	N/A	N/A
eggNOG-mapper	UHGV-0206637_26	411471.SUBVAR_05843	53.5	0.000000611	N/A	N/A
Pfam	UHGV-0206637_26	PF07638	N/A	N/A	ECF sigma factor	Sigma70_ECF
structural_annotation	UHGV-0206637_26	PF07374,MF_00674,TIGR01636,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0206637_27	phrog_8684	84.5	7.8e-25	N/A	unknown function
UniRef90	UHGV-0206637_27	UniRef90_A0A1C5PC30	120.0	3.2e-32	YopX protein	N/A
eggNOG-mapper	UHGV-0206637_27	742767.HMPREF9456_02399	82.8	3.6e-18	YopX protein	N/A
Pfam	UHGV-0206637_27	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0206637_27	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0206637_27	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-0206637_29	phrog_2245	88.6	7.4e-26	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-0206637_29	UniRef90_A0A315Y0X2	77.0	1.97e-16	MazG-like nucleotide pyrophosphohydrolase family protein	N/A
eggNOG-mapper	UHGV-0206637_29	1203606.HMPREF1526_01892	55.1	0.0000000303	N/A	N/A
Pfam	UHGV-0206637_29	PF03819	N/A	N/A	MazG nucleotide pyrophosphohydrolase domain	MazG
structural_annotation	UHGV-0206637_29	NF001611,COG1694	N/A	N/A	N/A	N/A
KOfam	UHGV-0206637_33	K06919	108.1	8.9e-32	K06919; putative DNA primase/helicase	N/A
PHROG	UHGV-0206637_33	phrog_1829	773.3	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0206637_33	UniRef90_A0A348ZC79	833.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-0206637_33	1410670.JHXF01000015_gene2274	785.0	0	Phage plasmid primase, P4 family	N/A
Pfam	UHGV-0206637_33	PF08706	N/A	N/A	D5 N terminal like	D5_N
Pfam	UHGV-0206637_33	PF19263	N/A	N/A	N/A	DUF5906
Pfam	UHGV-0206637_33	PF03288	N/A	N/A	Poxvirus D5 protein-like	Pox_D5
NCBIFam	UHGV-0206637_33	TIGR01613.1	N/A	N/A	phage/plasmid primase, P4 family	N/A
COG	UHGV-0206637_33	COG3378	N/A	N/A	DNA primase, phage- or plasmid-associated	N/A
structural_annotation	UHGV-0206637_33	PF08706,PF05272,PF02257,MF_04000,NF011296,COG3378,COG4983	N/A	N/A	N/A	N/A
PHROG	UHGV-0206637_34	phrog_378	94.6	1.4e-27	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0206637_34	UniRef90_UPI0006852132	162.0	0	N/A	N/A
eggNOG-mapper	UHGV-0206637_34	1410670.JHXF01000015_gene2272	162.0	0	N/A	N/A
Pfam	UHGV-0206637_34	PF05037	N/A	N/A	N/A	DUF669
structural_annotation	UHGV-0206637_34	PF05037,NF004948	N/A	N/A	N/A	N/A
KOfam	UHGV-0206637_35	K19789	224.5	0	radD; DNA repair protein RadD	N/A
PHROG	UHGV-0206637_35	phrog_16	215.6	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0206637_35	UniRef90_UPI001A983115	478.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-0206637_35	1410670.JHXF01000015_gene2270	478.0	0	helicase	N/A
PADLOC	UHGV-0206637_35	mREase_IV_00005	108.9	1.7e-32	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0206637_35	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0206637_35	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0206637_35	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0206637_35	PF04851,PF00271,MF_01489,TIGR04095,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-0206637_36	phrog_2872	253.8	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0206637_36	UniRef90_UPI001A9B3ECC	337.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0206637_36	754027.HMPREF9554_00709	223.0	0	N/A	N/A
Pfam	UHGV-0206637_36	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0206637_36	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-0206637_37	phrog_253	127.3	9.8e-38	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0206637_37	UniRef90_UPI0019171ADA	120.0	4.68e-31	siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-0206637_37	997350.HMPREF9129_1673	71.6	0.000000000000231	Siphovirus Gp157	N/A
Pfam	UHGV-0206637_37	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0206637_37	PF05565,NF002139	N/A	N/A	N/A	N/A
PHROG	UHGV-0206637_38	phrog_15609	93.5	1.8e-27	N/A	unknown function
UniRef90	UHGV-0206637_38	UniRef90_A0A373VML2	243.0	0	N/A	N/A
eggNOG-mapper	UHGV-0206637_38	641112.ACOK01000073_gene2872	122.0	2.86e-30	N/A	N/A
Pfam	UHGV-0206637_38	PF11300	N/A	N/A	N/A	DUF3102
structural_annotation	UHGV-0206637_38	PF11300,NF033725	N/A	N/A	N/A	N/A
PHROG	UHGV-0206637_40	phrog_8470	219.1	0	N/A	unknown function
UniRef90	UHGV-0206637_40	UniRef90_UPI0019175B9C	313.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0206637_40	641112.ACOK01000073_gene2870	440.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0206637_40	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0206637_40	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0206637_41	phrog_38338	68.1	1.5e-19	N/A	unknown function
UniRef90	UHGV-0206637_41	UniRef90_UPI00137B3A8C	65.9	0.0000000000533	Cas9 inhibitor AcrIIA9 family protein	N/A
eggNOG-mapper	UHGV-0206637_41	641112.ACOK01000073_gene2869	97.1	1.46e-24	N/A	N/A
PHROG	UHGV-0206637_43	phrog_323	40.7	0.000000000041	endonuclease	DNA, RNA and nucleotide metabolism
dbAPIS	UHGV-0206637_43	APIS006	N/A	N/A	Trigger programmed cell death (PCD) by P4 prophage.	N/A
Pfam	UHGV-0206637_44	PF20084	N/A	N/A	Conjugative transfer region protein TrbK	TrbK
structural_annotation	UHGV-0206637_47	PF11614,TIGR02588,COG2847	N/A	N/A	N/A	N/A
UniRef90	UHGV-0206637_48	UniRef90_UPI000FDA89FE	69.7	0.0000000000000314	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0206637_48	1410650.JHWL01000003_gene2856	46.6	0.00000644	N/A	N/A
structural_annotation	UHGV-0206637_48	PF05339,NF041951,COG1396	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0206637	Yes	34,759	53	100	1
UHGV-0004339	No	35,727	53	100	1
UHGV-1458901	No	34,483	53	100	1
UHGV-0003622	No	31,101	53	91	1
UHGV-0012082	No	26,862	52	77	1
UHGV-0023238	No	26,357	54	77	1
UHGV-0006379	No	26,478	52	76	1
UHGV-0017551	No	21,633	54	62	1
UHGV-1765144	No	16,449	54	51	1
UHGV-2125910	No	10,793	54	33	1
UHGV-0089591	No	10,311	53	31	1
UHGV-1652622	No	10,311	53	31	1
UHGV-1685995	No	10,666	53	30	1