vOTU vOTU-048187

vOTU: vOTU-048187

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-048187
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00013 → vGENUS-20703 → vSUBGEN-40973 → vOTU-048187
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0207251
Biosample ID	N/A
Genome length (bp)	41,573 bps
CheckV completeness	100.00% (Complete)
CDS count	69
CDS density	91.54%
tRNA count	3
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	218	Host agreement	94.5
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-0207251_3	PF04325	N/A	N/A	N/A	N/A
PHROG	UHGV-0207251_5	phrog_518	107.7	1e-31	Rha-like transcriptional regulator	transcription regulation
UniRef90	UHGV-0207251_5	UniRef90_A0A6M4K846	108.0	2.49e-27	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0207251_5	748224.HMPREF9436_01449	136.0	1.03e-38	Phage regulatory protein Rha (Phage_pRha)	N/A
Pfam	UHGV-0207251_5	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
NCBIFam	UHGV-0207251_5	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-0207251_5	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-0207251_5	PF09669,TIGR02681,COG3646	N/A	N/A	N/A	N/A
PHROG	UHGV-0207251_6	phrog_4433	121.5	7.2e-36	N/A	unknown function
eggNOG-mapper	UHGV-0207251_6	439375.Oant_2324	101.0	1.26e-23	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0207251_6	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0207251_6	PF12120,NF000066	N/A	N/A	N/A	N/A
PHROG	UHGV-0207251_7	phrog_27197	50.0	0.000000000000057	N/A	unknown function
eggNOG-mapper	UHGV-0207251_7	394503.Ccel_3068	54.3	0.0000000426	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0207251_7	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0207251_9	PF10743,NF033787	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0207251_11	PF07870,COG3461	N/A	N/A	N/A	N/A
PHROG	UHGV-0207251_13	phrog_674	140.7	9.99967e-42	N/A	unknown function
UniRef90	UHGV-0207251_13	UniRef90_A0A3E2UDL3	360.0	0	N/A	N/A
eggNOG-mapper	UHGV-0207251_13	742722.HMPREF9463_00201	84.3	9.96e-16	N/A	N/A
Pfam	UHGV-0207251_13	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0207251_13	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-0207251_14	phrog_2760	185.6	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0207251_14	UniRef90_A0A3E2UDI4	441.0	0	Phage recombination protein Bet	N/A
eggNOG-mapper	UHGV-0207251_14	1235794.C811_01355	158.0	4.48416e-44	RecT family	N/A
Pfam	UHGV-0207251_14	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0207251_14	TIGR01913.1	N/A	N/A	phage recombination protein Bet	N/A
COG	UHGV-0207251_14	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0207251_14	PF03837,TIGR01913,COG3723	N/A	N/A	N/A	N/A
COG	UHGV-0207251_15	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0207251_15	PF00436,MF_00720,NF004512,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0207251_16	phrog_5968	72.2	6.1e-21	replisome organizer	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0207251_16	UniRef90_UPI001C02E649	364.0	0	DnaD domain protein	N/A
eggNOG-mapper	UHGV-0207251_16	718252.FP2_01000	169.0	0	N/A	N/A
NCBIFam	UHGV-0207251_16	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
COG	UHGV-0207251_16	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0207251_16	PF09681,MF_01819,TIGR01714,TIGR01446,COG3935	N/A	N/A	N/A	N/A
PHROG	UHGV-0207251_18	phrog_757	229.1	0	DNA methyltransferase	other
UniRef90	UHGV-0207251_18	UniRef90_UPI001A9B5584	221.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0207251_18	1235790.C805_00032	214.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0207251_18	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0207251_18	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0207251_19	phrog_3136	113.6	5.1e-34	N/A	unknown function
UniRef90	UHGV-0207251_19	UniRef90_A0A6N7TMC2	157.0	1.4013e-45	ASCH domain-containing protein	N/A
COG	UHGV-0207251_19	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0207251_19	PF12961,NF008917,COG4933	N/A	N/A	N/A	N/A
KOfam	UHGV-0207251_20	K01160	60.6	4.7e-17	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0207251_20	phrog_34	59.4	7.3e-17	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0207251_20	UniRef90_A0A844DBG8	236.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0207251_20	875454.BAEW01000002_gene491	132.0	2.75e-38	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0207251_20	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0207251_20	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0207251_20	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0207251_22	phrog_36	53.6	0.0000000000000041	transcriptional regulator	transcription regulation
structural_annotation	UHGV-0207251_22	PF07374,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-0207251_23	K06909	338.0	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0207251_23	phrog_3717	136.7	1.2e-40	terminase large subunit	head and packaging
UniRef90	UHGV-0207251_23	UniRef90_A0A1Y4ES07	499.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0207251_23	665956.HMPREF1032_02957	468.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0207251_23	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
Pfam	UHGV-0207251_23	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0207251_23	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0207251_23	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0207251_23	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0207251_23	PF04466,PF16677,PF17289,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0207251_24	phrog_64	124.9	2.4e-37	portal protein	head and packaging
UniRef90	UHGV-0207251_24	UniRef90_A0A6N7TNT3	493.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0207251_24	673376.F2VHW1_9CAUD	168.0	3.22299e-44	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0207251_24	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0207251_24	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0207251_26	phrog_2468	80.1	1.2e-23	head morphogenesis	head and packaging
UniRef90	UHGV-0207251_26	UniRef90_A0A844DBI4	596.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0207251_26	1504822.CCNO01000013_gene286	125.0	5.61e-29	cell adhesion	N/A
Pfam	UHGV-0207251_26	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0207251_26	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0207251_26	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0207251_27	phrog_5	48.8	0.00000000000017	tail completion or Neck1 protein	connector
UniRef90	UHGV-0207251_27	UniRef90_A0A844DDB3	288.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0207251_27	1123309.AQYB01000018_gene814	93.2	2.81e-22	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0207251_27	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0207251_27	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0207251_28	phrog_478	123.8	7.3e-37	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0207251_28	UniRef90_A0A373Q857	164.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0207251_28	1111121.HMPREF1247_0834	97.4	2.78e-24	N/A	N/A
structural_annotation	UHGV-0207251_29	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0207251_30	phrog_544	113.3	2.1e-33	major head protein	head and packaging
UniRef90	UHGV-0207251_30	UniRef90_A0A1C6B5R0	318.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0207251_30	476272.RUMHYD_01776	279.0	0	N/A	N/A
structural_annotation	UHGV-0207251_30	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0207251_32	phrog_17977	45.6	0.0000000000009	N/A	unknown function
UniRef90	UHGV-0207251_32	UniRef90_A0A844DHJ8	236.0	0	Phage head closure protein	N/A
structural_annotation	UHGV-0207251_32	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0207251_33	PF13554	N/A	N/A	N/A	N/A
PHROG	UHGV-0207251_34	phrog_885	64.8	1e-18	major tail protein	tail
UniRef90	UHGV-0207251_34	UniRef90_A0A843J9F0	127.0	9.69e-33	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0207251_34	457396.CSBG_01054	55.8	0.000000857	Chitobiase/beta-hexosaminidase C-terminal domain	N/A
COG	UHGV-0207251_34	COG2273	N/A	N/A	Beta-glucanase, GH16 family	N/A
structural_annotation	UHGV-0207251_34	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0207251_37	phrog_9959	83.7	1.1e-24	tail length tape measure protein	tail
UniRef90	UHGV-0207251_37	UniRef90_A0A844DDD5	763.0	0	Tape measure protein	N/A
eggNOG-mapper	UHGV-0207251_37	883066.HMPREF9233_00516	120.0	7.43e-25	tape measure	N/A
Pfam	UHGV-0207251_37	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0207251_37	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0207251_37	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0207251_37	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
UniRef90	UHGV-0207251_38	UniRef90_A0A1Q2C487	90.1	3.74e-18	MtfA protein	N/A
eggNOG-mapper	UHGV-0207251_38	610130.Closa_0753	95.1	8.13e-21	phage tail	N/A
COG	UHGV-0207251_38	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0207251_38	PF05709,PF02408,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0207251_39	phrog_3558	211.4	0	tail protein	tail
UniRef90	UHGV-0207251_39	UniRef90_UPI001C01D15B	146.0	1.12e-33	phage tail protein	N/A
eggNOG-mapper	UHGV-0207251_39	1235799.C818_04233	100.0	7.92e-20	Prophage endopeptidase tail	N/A
Pfam	UHGV-0207251_39	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
COG	UHGV-0207251_39	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0207251_39	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
KOfam	UHGV-0207251_42	K07273	175.0	0	acm; lysozyme	N/A
PHROG	UHGV-0207251_42	phrog_291	137.3	1.3e-40	endolysin	lysis
UniRef90	UHGV-0207251_42	UniRef90_UPI001D0EE7D8	305.0	0	glycoside hydrolase family 25 protein	N/A
eggNOG-mapper	UHGV-0207251_42	748224.HMPREF9436_00154	280.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0207251_42	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0207251_42	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0207251_42	PF01183,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0207251_43	phrog_4105	102.3	2.8e-30	N/A	unknown function
eggNOG-mapper	UHGV-0207251_43	657322.FPR_27220	136.0	1.95e-40	N/A	N/A
PHROG	UHGV-0207251_44	phrog_15303	84.2	1.1e-24	N/A	unknown function
structural_annotation	UHGV-0207251_45	PF07374,MF_00245,NF001072,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0207251_46	phrog_374	72.1	1.3e-22	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0207251_46	UniRef90_C0D8J3	76.3	0.000000000000359	AP2 domain protein	N/A
structural_annotation	UHGV-0207251_46	PF18337,PF00847	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0207251_47	1235802.C823_04625	58.9	0.00000000699	N/A	N/A
PHROG	UHGV-0207251_50	phrog_13890	60.2	2.4e-17	N/A	unknown function
UniRef90	UHGV-0207251_50	UniRef90_A0A1C7FKE8	60.1	0.0000000000866	Arc domain-containing protein	N/A
eggNOG-mapper	UHGV-0207251_50	1519439.JPJG01000054_gene2127	46.6	0.00000356	N/A	N/A
Pfam	UHGV-0207251_50	PF03869	N/A	N/A	Arc-like DNA binding domain	Arc
structural_annotation	UHGV-0207251_50	PF10723,NF010256,COG4710	N/A	N/A	N/A	N/A
UniRef90	UHGV-0207251_51	UniRef90_A0A3E3DVI7	55.8	0.0000000387	HTH luxR-type domain-containing protein	N/A
structural_annotation	UHGV-0207251_51	PF00196,NF040595,COG2771	N/A	N/A	N/A	N/A
PHROG	UHGV-0207251_54	phrog_3754	95.3	5e-28	N/A	unknown function
eggNOG-mapper	UHGV-0207251_54	1485543.JMME01000025_gene2462	103.0	3.96e-27	N/A	N/A
PHROG	UHGV-0207251_55	phrog_21718	115.3	4.3e-34	N/A	unknown function
eggNOG-mapper	UHGV-0207251_55	397290.C810_05210	99.0	3.81e-24	N/A	N/A
PHROG	UHGV-0207251_56	phrog_22984	77.6	9.2e-23	N/A	unknown function
PHROG	UHGV-0207251_57	phrog_16490	147.9	6.44597e-44	N/A	unknown function
eggNOG-mapper	UHGV-0207251_57	397290.C810_05212	126.0	2.27e-32	N/A	N/A
PHROG	UHGV-0207251_59	phrog_20016	208.3	0	N/A	unknown function
UniRef90	UHGV-0207251_59	UniRef90_A0A285PT46	203.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0207251_59	1226322.HMPREF1545_00077	191.0	0	N/A	N/A
structural_annotation	UHGV-0207251_59	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0207251_60	phrog_374	179.1	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0207251_60	UniRef90_A6BES1	147.0	4.58e-40	AP2 domain protein	N/A
eggNOG-mapper	UHGV-0207251_60	1540092.A0A0A0RSY9_9CAUD	147.0	1.34006e-41	transferase activity, transferring alkyl or aryl (other than methyl) groups	N/A
eggNOG-mapper	UHGV-0207251_61	476272.RUMHYD_01772	54.7	0.000000257	N/A	N/A
structural_annotation	UHGV-0207251_61	PF12510	N/A	N/A	N/A	N/A
KOfam	UHGV-0207251_63	K14059	141.9	7.40026e-42	int; integrase	N/A
PHROG	UHGV-0207251_63	phrog_1	170.5	0	integrase	integration and excision
UniRef90	UHGV-0207251_63	UniRef90_A0A174D176	427.0	0	Tyrosine recombinase XerD	N/A
eggNOG-mapper	UHGV-0207251_63	411471.SUBVAR_05137	231.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0207251_63	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0207251_63	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0207251_63	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0207251_64	K22300	45.6	0.0000000000012	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0207251_64	phrog_2328	45.3	0.00000000000057	transcriptional repressor	transcription regulation
UniRef90	UHGV-0207251_64	UniRef90_UPI0018CC79B4	320.0	0	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0207251_64	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0207251_64	PF13560,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0207251_67	phrog_4980	105.6	3.1e-32	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0207251_67	UniRef90_UPI000F643789	77.4	0.0000000000000185	Ltp family lipoprotein	N/A
eggNOG-mapper	UHGV-0207251_67	428127.EUBDOL_01530	68.2	0.0000000000528	Host cell surface-exposed lipoprotein	N/A
Pfam	UHGV-0207251_67	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
Pfam	UHGV-0207251_67	PF07553	N/A	N/A	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
COG	UHGV-0207251_67	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-0207251_67	PF02631,MF_01114,NF001062,COG2137	N/A	N/A	N/A	N/A
KOfam	UHGV-0207251_69	K18830	62.7	6.6e-18	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0207251_69	phrog_2967	49.5	0.000000000000055	transcriptional regulator	transcription regulation
UniRef90	UHGV-0207251_69	UniRef90_A0A844DFR0	244.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0207251_69	748224.HMPREF9436_01444	171.0	0	N/A	N/A
PADLOC	UHGV-0207251_69	retron_type_VI_hth_cluster2_1	41.0	0.000000000024	N/A	Retron
Pfam	UHGV-0207251_69	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0207251_69	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0207251_69	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0207251	Yes	41,573	52	100	1