vOTU vOTU-048418

vOTU: vOTU-048418

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-048418
Number of genomes	3
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Massilimaliae → Massilimaliae timonensis
Taxonomy (UHGV)	vFAM-00022 → vSUBFAM-04680 → vGENUS-08521 → vSUBGEN-08551 → vOTU-048418
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Massilimaliae → Massilimaliae timonensis
Host range breadth	Species
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-0208950
Biosample ID	SAMN11031395
Genome length (bp)	32,380 bps
CheckV completeness	100.00% (Complete)
CDS count	53
CDS density	93.63%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage		Total connections		Host agreement
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Massilimaliae → Massilimaliae timonensis	Total connections	2	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0208950_6	phrog_9188	67.4	1.6e-19	N/A	unknown function
structural_annotation	UHGV-0208950_6	PF11023,MF_01502,NF002796	N/A	N/A	N/A	N/A
UniRef90	UHGV-0208950_8	UniRef90_A0A8J6IK44	67.4	0.000000000000313	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0208950_8	1430331.EP10_02425	47.4	0.0000045	N/A	N/A
structural_annotation	UHGV-0208950_8	PF05339,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0208950_9	K07729	45.1	0.0000000000022	K07729; putative transcriptional regulator	N/A
UniRef90	UHGV-0208950_9	UniRef90_UPI0018A05A7F	146.0	1.96182e-44	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0208950_9	718252.FP2_16270	62.0	0.000000000017	sequence-specific DNA binding	N/A
PADLOC	UHGV-0208950_9	retron_type_VI_hth_cluster2_1	43.3	0.00000000001	N/A	Retron
Pfam	UHGV-0208950_9	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0208950_9	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0208950_9	PF12844,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0208950_10	K07729	52.8	0.0000000000000091	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0208950_10	phrog_8	71.5	1.7e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-0208950_10	UniRef90_UPI00189E1B38	213.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0208950_10	1232443.BAIA02000007_gene674	83.6	2.29e-19	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0208950_10	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0208950_10	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0208950_10	PF12844,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0208950_11	phrog_87	70.6	1.8e-20	metallo-protease	other
UniRef90	UHGV-0208950_11	UniRef90_UPI0018A04FE7	298.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0208950_11	1007096.BAGW01000011_gene2354	111.0	1.76e-29	IrrE N-terminal-like domain	N/A
Pfam	UHGV-0208950_11	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0208950_11	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0208950_11	PF06114,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-0208950_12	phrog_1847	521.8	0	N/A	unknown function
UniRef90	UHGV-0208950_12	UniRef90_A0A143ZYV9	441.0	0	T5orf172 domain protein	N/A
eggNOG-mapper	UHGV-0208950_12	1235792.C808_05258	419.0	0	N/A	N/A
Pfam	UHGV-0208950_12	PF13250	N/A	N/A	N/A	DUF4041
Pfam	UHGV-0208950_12	PF10544	N/A	N/A	T5orf172 domain	T5orf172
COG	UHGV-0208950_12	COG0172	N/A	N/A	Seryl-tRNA synthetase	N/A
structural_annotation	UHGV-0208950_12	PF13250,PF19824,MF_01506	N/A	N/A	N/A	N/A
KOfam	UHGV-0208950_13	K14059	247.5	0	int; integrase	N/A
PHROG	UHGV-0208950_13	phrog_1	221.2	0	integrase	integration and excision
UniRef90	UHGV-0208950_13	UniRef90_A0A8J6PFT7	749.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0208950_13	1408823.AXUS01000024_gene2685	161.0	2.32616e-43	Arm DNA-binding domain	N/A
Pfam	UHGV-0208950_13	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0208950_13	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0208950_13	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0208950_13	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0208950_14	K01447	60.3	4.3e-17	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0208950_14	phrog_7698	171.7	0	endolysin	lysis
UniRef90	UHGV-0208950_14	UniRef90_UPI001E304781	625.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0208950_14	293826.Amet_2548	230.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0208950_14	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0208950_14	PF05036	N/A	N/A	SPOR domain	SPOR
COG	UHGV-0208950_14	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
PHROG	UHGV-0208950_15	phrog_10091	111.3	6.4e-33	holin	lysis
UniRef90	UHGV-0208950_15	UniRef90_A0A1C5RHU1	162.0	0	Small integral membrane protein	N/A
eggNOG-mapper	UHGV-0208950_15	97139.C824_05950	129.0	2.31e-38	Bacteriophage holin	N/A
Pfam	UHGV-0208950_15	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-0208950_15	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-0208950_15	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0208950_15	COG5546	N/A	N/A	N/A	N/A
PHROG	UHGV-0208950_16	phrog_4105	59.9	3.7e-17	N/A	unknown function
eggNOG-mapper	UHGV-0208950_16	411459.RUMOBE_00911	82.4	7.96e-19	N/A	N/A
eggNOG-mapper	UHGV-0208950_17	1235797.C816_04174	160.0	0	N/A	N/A
Pfam	UHGV-0208950_17	PF11192	N/A	N/A	N/A	DUF2977
PHROG	UHGV-0208950_19	phrog_1067	369.7	0	minor head protein	head and packaging
UniRef90	UHGV-0208950_19	UniRef90_A0A8J6TY46	1429.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0208950_19	1123263.AUKY01000068_gene489	403.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0208950_19	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0208950_19	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0208950_19	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0208950_19	PF14594,PF04862,TIGR01665,TIGR04362,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0208950_20	phrog_33	80.3	4.1e-23	distal tail protein Dit	tail
UniRef90	UHGV-0208950_20	UniRef90_A0A1C6H6D2	283.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0208950_20	1160721.RBI_I01575	180.0	0	Phage tail protein	N/A
COG	UHGV-0208950_20	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0208950_20	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0208950_21	phrog_23464	262.4	0	N/A	unknown function
UniRef90	UHGV-0208950_21	UniRef90_A0A1C6H5M9	553.0	0	Phage-related minor tail protein	N/A
eggNOG-mapper	UHGV-0208950_21	1232452.BAIB02000007_gene1616	297.0	0	phage tail tape measure protein	N/A
COG	UHGV-0208950_21	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0208950_21	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0208950_22	phrog_709	115.6	2.8e-34	N/A	unknown function
eggNOG-mapper	UHGV-0208950_22	411471.SUBVAR_05858	153.0	0	N/A	N/A
PHROG	UHGV-0208950_23	phrog_88	159.0	0	major tail protein	tail
UniRef90	UHGV-0208950_23	UniRef90_A0A8J6P949	376.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0208950_23	411471.SUBVAR_05857	191.0	0	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0208950_23	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0208950_23	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0208950_24	phrog_78	47.8	0.00000000000027	tail terminator	connector
UniRef90	UHGV-0208950_24	UniRef90_U2SBX3	102.0	3.16e-26	HTH merR-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0208950_24	1226322.HMPREF1545_00120	102.0	5.3e-27	N/A	N/A
structural_annotation	UHGV-0208950_24	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0208950_25	phrog_5	55.4	0.0000000000000015	tail completion or Neck1 protein	connector
UniRef90	UHGV-0208950_25	UniRef90_A0A8J6PH82	266.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0208950_25	411471.SUBVAR_05855	143.0	1.7306e-42	N/A	N/A
Pfam	UHGV-0208950_25	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0208950_25	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0208950_26	phrog_1951	84.4	9.2e-25	head-tail adaptor	connector
UniRef90	UHGV-0208950_26	UniRef90_A0A8J6P6R3	205.0	0	Phage head-tail adapter protein	N/A
eggNOG-mapper	UHGV-0208950_26	411471.SUBVAR_05854	128.0	1.87e-37	N/A	N/A
structural_annotation	UHGV-0208950_26	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0208950_27	phrog_5223	91.3	4.9e-27	neck protein	connector
UniRef90	UHGV-0208950_27	UniRef90_A0A8J6P3F9	188.0	0	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0208950_27	411471.SUBVAR_05853	134.0	1.04e-39	N/A	N/A
NCBIFam	UHGV-0208950_27	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-0208950_27	TIGR01560	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0208950_28	1121344.JHZO01000007_gene2118	72.0	0.000000000000228	S-layer domain-containing protein	N/A
COG	UHGV-0208950_28	COG5492	N/A	N/A	N/A	N/A
PHROG	UHGV-0208950_29	phrog_10	128.3	7.7e-38	major head protein	head and packaging
UniRef90	UHGV-0208950_29	UniRef90_A0A8J6P3N1	737.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0208950_29	445975.COLSTE_02162	178.0	0	Phage capsid family	N/A
Pfam	UHGV-0208950_29	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0208950_29	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0208950_29	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0208950_29	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0208950_30	K06904	80.4	3.1e-23	N/A	N/A
PHROG	UHGV-0208950_30	phrog_80	100.2	3.1e-29	head maturation protease	head and packaging
UniRef90	UHGV-0208950_30	UniRef90_A0A8J6PCV7	377.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0208950_30	1321814.HMPREF9089_00929	191.0	0	Caudovirus prohead serine protease	N/A
Pfam	UHGV-0208950_30	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
COG	UHGV-0208950_30	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0208950_30	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0208950_31	phrog_12	135.3	3.60001e-40	portal protein	head and packaging
UniRef90	UHGV-0208950_31	UniRef90_A0A8J6PFS2	825.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0208950_31	411471.SUBVAR_05850	630.0	0	Phage portal protein	N/A
Pfam	UHGV-0208950_31	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0208950_31	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0208950_31	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0208950_33	phrog_9	337.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0208950_33	UniRef90_A0A8J6TY49	1100.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0208950_33	411471.SUBVAR_05848	859.0	0	large subunit	N/A
Pfam	UHGV-0208950_33	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0208950_33	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0208950_33	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0208950_33	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0208950_34	phrog_1066	99.3	2.8e-29	N/A	unknown function
eggNOG-mapper	UHGV-0208950_34	1094508.Tsac_2428	114.0	2.18e-31	N/A	N/A
structural_annotation	UHGV-0208950_34	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0208950_36	phrog_119	76.2	4.1e-22	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0208950_36	UniRef90_A0A8J6TW61	212.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0208950_36	887929.HMP0721_1270	124.0	1.4e-35	HNH nucleases	N/A
Pfam	UHGV-0208950_36	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0208950_36	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0208950_37	phrog_11237	91.3	1.1e-26	N/A	unknown function
eggNOG-mapper	UHGV-0208950_37	610130.Closa_0738	100.0	1.39e-25	N/A	N/A
UniRef90	UHGV-0208950_39	UniRef90_UPI000E489044	67.4	0.00000000000102	membrane lipoprotein lipid attachment site-containing protein	N/A
UniRef90	UHGV-0208950_43	UniRef90_A0A8J6PM04	144.0	4.34403e-44	N/A	N/A
Pfam	UHGV-0208950_43	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0208950_43	NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-0208950_45	phrog_801	88.4	1.1e-25	endolysin; inhibits RNA polymerase	lysis
UniRef90	UHGV-0208950_45	UniRef90_A0A413FWV3	124.0	1.48e-34	N/A	N/A
eggNOG-mapper	UHGV-0208950_45	1094556.MCY_01183	76.6	0.00000000000000658	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	N/A
Pfam	UHGV-0208950_45	PF18909	N/A	N/A	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
COG	UHGV-0208950_45	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A
structural_annotation	UHGV-0208950_45	PF18909	N/A	N/A	N/A	N/A
KOfam	UHGV-0208950_46	K00571	117.6	1.3e-34	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0208950_46	phrog_67	96.9	7.5e-30	DNA methyltransferase	other
UniRef90	UHGV-0208950_46	UniRef90_UPI000B8B33F0	575.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-0208950_46	411468.CLOSCI_00299	375.0	0	DNA methylase	N/A
PADLOC	UHGV-0208950_46	MTase_II_00157	89.5	1.5e-27	Type II methyltransferase	RM
Pfam	UHGV-0208950_46	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0208950_46	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0208950_46	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
KOfam	UHGV-0208950_50	K17680	305.6	0	PEO1; twinkle protein [EC:5.6.2.3]	N/A
PHROG	UHGV-0208950_50	phrog_239	276.6	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0208950_50	UniRef90_A0A1C5RKL7	1222.0	0	DNA repair protein RadA	N/A
eggNOG-mapper	UHGV-0208950_50	476272.RUMHYD_02834	522.0	0	N/A	N/A
Pfam	UHGV-0208950_50	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-0208950_50	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0208950_50	PF03796,PF19898,MF_04154,TIGR03877,TIGR01391,COG0467,COG0358	N/A	N/A	N/A	N/A
PHROG	UHGV-0208950_51	phrog_2514	80.3	3.3e-25	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0208950_51	428127.EUBDOL_01512	108.0	8.51e-25	DnaD domain protein	N/A
COG	UHGV-0208950_51	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
PHROG	UHGV-0208950_52	phrog_18107	137.9	6.59998e-41	N/A	unknown function
eggNOG-mapper	UHGV-0208950_52	1449050.JNLE01000003_gene3912	191.0	0	N/A	N/A
structural_annotation	UHGV-0208950_52	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-0208950_53	phrog_2872	231.5	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0208950_53	UniRef90_UPI00058FD242	286.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0208950_53	1345695.CLSA_c30180	296.0	0	AAA domain	N/A
Pfam	UHGV-0208950_53	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0208950_53	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0208950	Yes	32,380	43	100	1
UHGV-1295418	No	13,528	43	45	1
UHGV-0390147	No	13,227	43	44	1