vOTU vOTU-048488

vOTU: vOTU-048488

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-048488
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-05889 → vGENUS-13781 → vSUBGEN-22459 → vOTU-048488
Host lineage	Bacteria → Firmicutes_A → Clostridia → Christensenellales → CAG-74 → RUG563 → ERR7738657_bin.30
Host range breadth	Species
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0209493
Biosample ID	SAMN09781780
Genome length (bp)	43,131 bps
CheckV completeness	100.00% (Complete)
CDS count	53
CDS density	91.55%
tRNA count	1
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Christensenellales → CAG-74 → RUG563 → ERR7738657_bin.30	Total connections	49	Host agreement	79.59
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
Pfam	UHGV-0209493_4	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
COG	UHGV-0209493_4	COG2197	N/A	N/A	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	N/A
structural_annotation	UHGV-0209493_4	PF00196,MF_00674,TIGR02985,COG2771	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0209493_5	411470.RUMGNA_00254	92.8	1.21e-23	N/A	N/A
UniRef90	UHGV-0209493_7	UniRef90_UPI001B1EC1EA	181.0	0	SH3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0209493_7	742735.HMPREF9467_01314	60.8	0.0000000762	N/A	N/A
Pfam	UHGV-0209493_7	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
structural_annotation	UHGV-0209493_7	PF18342,PF05382,NF040670,COG4991	N/A	N/A	N/A	N/A
UniRef90	UHGV-0209493_8	UniRef90_A0A8D9UHK2	95.9	3.99e-21	Chitin oligosaccharide deacetylase	N/A
eggNOG-mapper	UHGV-0209493_8	1154860.SAG0136_08155	67.0	0.0000000000696	N/A	N/A
Pfam	UHGV-0209493_8	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-0209493_8	PF14600	N/A	N/A	N/A	N/A
PHROG	UHGV-0209493_11	phrog_10485	41.6	0.0000000000092	N/A	unknown function
eggNOG-mapper	UHGV-0209493_11	314262.MED193_18919	56.6	0.00000409	tail collar domain protein	N/A
Pfam	UHGV-0209493_11	PF12789	N/A	N/A	Phage tail repeat like	PTR
COG	UHGV-0209493_11	COG4675	N/A	N/A	Phage tail collar domain	N/A
PHROG	UHGV-0209493_13	phrog_22978	607.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0209493_13	1410650.JHWL01000003_gene2814	269.0	0	N/A	N/A
UniRef90	UHGV-0209493_14	UniRef90_R6HIP3	124.0	1.07e-28	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0209493_14	1410650.JHWL01000003_gene2815	145.0	1.81e-36	N/A	N/A
PHROG	UHGV-0209493_15	phrog_511	212.9	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0209493_15	1410650.JHWL01000003_gene2827	288.0	0	N/A	N/A
structural_annotation	UHGV-0209493_15	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0209493_16	phrog_30034	71.2	1.6e-20	N/A	unknown function
UniRef90	UHGV-0209493_16	UniRef90_A0A1Y4WAL9	196.0	0	Chitinase	N/A
eggNOG-mapper	UHGV-0209493_16	1226322.HMPREF1545_04028	195.0	0	N/A	N/A
Pfam	UHGV-0209493_16	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-0209493_16	PF14600,COG3979	N/A	N/A	N/A	N/A
PHROG	UHGV-0209493_17	phrog_19280	93.1	2.8e-27	N/A	unknown function
UniRef90	UHGV-0209493_17	UniRef90_UPI00156F1082	305.0	0	N/A	N/A
eggNOG-mapper	UHGV-0209493_17	1160721.RBI_I01569	124.0	1.66e-28	N/A	N/A
Pfam	UHGV-0209493_17	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0209493_17	PF19789	N/A	N/A	N/A	N/A
PHROG	UHGV-0209493_18	phrog_12105	118.6	1.5e-35	N/A	unknown function
eggNOG-mapper	UHGV-0209493_18	1519439.JPJG01000060_gene1891	82.0	1.29e-16	N/A	N/A
PHROG	UHGV-0209493_20	phrog_1357	199.9	0	major head protein	head and packaging
UniRef90	UHGV-0209493_20	UniRef90_A0A3D2YEJ7	389.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0209493_20	1410650.JHWL01000003_gene2830	338.0	0	N/A	N/A
Pfam	UHGV-0209493_20	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0209493_20	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0209493_20	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0209493_21	phrog_13908	204.2	0	N/A	unknown function
UniRef90	UHGV-0209493_21	UniRef90_A0A174CZ20	73.6	0.0000000000585	Predicted ribosomal protein	N/A
eggNOG-mapper	UHGV-0209493_21	1410650.JHWL01000003_gene2831	115.0	4.84e-27	N/A	N/A
PHROG	UHGV-0209493_22	phrog_156	279.4	0	portal protein	head and packaging
UniRef90	UHGV-0209493_22	UniRef90_A0A8D9UH10	480.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-0209493_22	1410650.JHWL01000003_gene2833	473.0	0	N/A	N/A
structural_annotation	UHGV-0209493_22	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0209493_23	K06909	132.7	3.9e-39	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0209493_23	phrog_979	124.7	8.1e-39	terminase large subunit	head and packaging
UniRef90	UHGV-0209493_23	UniRef90_UPI0006875436	572.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0209493_23	1410650.JHWL01000003_gene2834	572.0	0	N/A	N/A
Pfam	UHGV-0209493_23	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0209493_23	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0209493_23	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
Pfam	UHGV-0209493_28	PF01402	N/A	N/A	Ribbon-helix-helix protein, copG family	RHH_1
PHROG	UHGV-0209493_29	phrog_3584	206.5	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0209493_29	536233.CLO_3655	126.0	8.6e-32	N/A	N/A
structural_annotation	UHGV-0209493_29	PF21578	N/A	N/A	N/A	N/A
PHROG	UHGV-0209493_32	phrog_21498	274.7	0	N/A	unknown function
UniRef90	UHGV-0209493_32	UniRef90_C7MM70	231.0	0	ParB-like nuclease	N/A
eggNOG-mapper	UHGV-0209493_32	469378.Ccur_02830	231.0	0	DNA binding	N/A
COG	UHGV-0209493_32	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0209493_32	PF05869,TIGR01712	N/A	N/A	N/A	N/A
KOfam	UHGV-0209493_33	K19779	44.3	0.0000000000029	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	N/A
PHROG	UHGV-0209493_33	phrog_599	47.6	0.00000000000023	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
Pfam	UHGV-0209493_33	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0209493_33	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-0209493_33	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
PHROG	UHGV-0209493_34	phrog_757	192.3	0	DNA methyltransferase	other
UniRef90	UHGV-0209493_34	UniRef90_UPI00189BA758	331.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0209493_34	397290.C810_01487	325.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0209493_34	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0209493_34	PF00145,TIGR00675,COG0270	N/A	N/A	N/A	N/A
UniRef90	UHGV-0209493_36	UniRef90_UPI000704FF9F	54.3	0.000000145	helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-0209493_36	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0209493_36	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
KOfam	UHGV-0209493_37	K01160	58.8	1.5e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0209493_37	phrog_140	133.3	1.2e-39	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0209493_37	UniRef90_A0A6G6IYB8	130.0	3.21e-36	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0209493_37	1437882.AZRU01000034_gene470	130.0	5.23e-37	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0209493_37	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0209493_37	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0209493_37	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0209493_38	phrog_424	83.3	2.5e-24	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0209493_38	UniRef90_A0A098AU96	568.0	0	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes	N/A
eggNOG-mapper	UHGV-0209493_38	1235800.C819_02256	521.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
Pfam	UHGV-0209493_38	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0209493_38	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0209493_38	PF01507,MF_00063,TIGR00434,COG0175	N/A	N/A	N/A	N/A
KOfam	UHGV-0209493_40	K03111	85.5	1.1e-24	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0209493_40	phrog_44	79.8	4.9e-23	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0209493_40	UniRef90_A0A7C1ENX2	89.4	1.78e-20	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0209493_40	926550.CLDAP_14930	75.5	6.59e-16	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0209493_40	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0209493_40	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0209493_40	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
KOfam	UHGV-0209493_48	K22300	63.9	3.5e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0209493_48	phrog_8	54.5	0.0000000000000029	transcriptional regulator	transcription regulation
UniRef90	UHGV-0209493_48	UniRef90_G9RV47	101.0	2.82e-25	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0209493_48	665956.HMPREF1032_00148	101.0	4.72e-26	N/A	N/A
Pfam	UHGV-0209493_48	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0209493_48	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0209493_48	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0209493_52	UniRef90_A0A1C6HD04	67.0	0.0000000000342	Helix-turn-helix	N/A
Pfam	UHGV-0209493_52	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0209493_52	PF13443,MF_00535,TIGR03070,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0209493_53	K06400	264.4	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0209493_53	phrog_95	271.3	0	integrase	integration and excision
UniRef90	UHGV-0209493_53	UniRef90_UPI00195A9A00	375.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0209493_53	697281.Mahau_2563	341.0	0	resolvase	N/A
Pfam	UHGV-0209493_53	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0209493_53	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0209493_53	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0209493_53	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0209493_53	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0209493	Yes	43,131	61	100	1