vOTU vOTU-049028

vOTU: vOTU-049028

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-049028
Number of genomes	11
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae
Taxonomy (UHGV)	vFAM-00022 → vSUBFAM-00431 → vGENUS-01057 → vSUBGEN-00720 → vOTU-049028
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae
Host range breadth	Family
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0213398
Biosample ID	N/A
Genome length (bp)	34,546 bps
CheckV completeness	100.00% (Complete)
CDS count	52
CDS density	91.77%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae	Total connections	375	Host agreement	98.4
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae	Total connections	4	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0213398_1	K22299	56.0	9.2e-16	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0213398_1	phrog_8	46.7	0.00000000000068	transcriptional regulator	transcription regulation
UniRef90	UHGV-0213398_1	UniRef90_A0A350VIR9	186.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0213398_1	1005705.HMPREF9967_0944	95.9	3.03e-22	Peptidase S24-like	N/A
Pfam	UHGV-0213398_1	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0213398_1	COG2932	N/A	N/A	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	N/A
structural_annotation	UHGV-0213398_1	PF01381,MF_02017,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0213398_2	K06400	327.2	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0213398_2	phrog_95	363.5	0	integrase	integration and excision
UniRef90	UHGV-0213398_2	UniRef90_A0A374JP43	1114.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0213398_2	411468.CLOSCI_00582	731.0	0	Recombinase	N/A
Pfam	UHGV-0213398_2	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0213398_2	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0213398_2	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0213398_2	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0213398_2	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-0213398_3	UniRef90_R6CDG9	56.2	0.00000000476	(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB	N/A
eggNOG-mapper	UHGV-0213398_3	537007.BLAHAN_04736	76.3	0.00000000000000116	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine	N/A
COG	UHGV-0213398_3	COG0621	N/A	N/A	tRNA A37 methylthiotransferase MiaB	N/A
KOfam	UHGV-0213398_4	K07273	193.6	0	acm; lysozyme	N/A
PHROG	UHGV-0213398_4	phrog_291	212.4	0	endolysin	lysis
UniRef90	UHGV-0213398_4	UniRef90_A0A374JNX4	633.0	0	LysM peptidoglycan-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0213398_4	521003.COLINT_02363	293.0	0	CW_7 repeat	N/A
Pfam	UHGV-0213398_4	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-0213398_4	PF08230	N/A	N/A	CW_7 repeat	CW_7
Pfam	UHGV-0213398_4	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-0213398_4	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0213398_4	PF01183,PF01476,TIGR02899,COG3757,COG1388	N/A	N/A	N/A	N/A
PHROG	UHGV-0213398_5	phrog_263	81.0	8.9e-24	holin	lysis
UniRef90	UHGV-0213398_5	UniRef90_R6GD40	160.0	0	Holin SPP1 family	N/A
eggNOG-mapper	UHGV-0213398_5	764291.STRUR_2085	84.0	6.14e-20	SPP1 phage holin	N/A
Pfam	UHGV-0213398_5	PF04688	N/A	N/A	SPP1 phage holin	Holin_SPP1
NCBIFam	UHGV-0213398_5	TIGR01592.1	N/A	N/A	phage holin	N/A
structural_annotation	UHGV-0213398_5	PF04688,TIGR01592	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0213398_6	742733.HMPREF9469_01798	62.8	0.00000000000913	N/A	N/A
KOfam	UHGV-0213398_9	K00986	95.4	6.6e-28	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-0213398_9	phrog_1423	148.4	1.12104e-44	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0213398_9	UniRef90_A0A374JNY7	781.0	0	Reverse transcriptase domain-containing protein	N/A
eggNOG-mapper	UHGV-0213398_9	33035.JPJF01000043_gene1000	266.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
PADLOC	UHGV-0213398_9	icity0040	52.9	9.7e-17	RT (reverse transcriptase)	CRISPR-CAS
Pfam	UHGV-0213398_9	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
COG	UHGV-0213398_9	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-0213398_9	PF00078,MF_04065,TIGR04416,COG3344	N/A	N/A	N/A	N/A
PHROG	UHGV-0213398_10	phrog_17147	262.5	0	N/A	unknown function
UniRef90	UHGV-0213398_10	UniRef90_A0A374JQW7	1237.0	0	N/A	N/A
eggNOG-mapper	UHGV-0213398_10	33035.JPJF01000043_gene1001	234.0	0	N/A	N/A
Pfam	UHGV-0213398_10	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
structural_annotation	UHGV-0213398_10	PF10651	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0213398_11	1111121.HMPREF1247_1244	67.0	0.0000000000000996	N/A	N/A
eggNOG-mapper	UHGV-0213398_12	411471.SUBVAR_06976	57.4	0.00000000467	N/A	N/A
PHROG	UHGV-0213398_14	phrog_1067	421.3	0	minor head protein	head and packaging
UniRef90	UHGV-0213398_14	UniRef90_A0A374JQG5	1823.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0213398_14	1160721.RBI_I01574	417.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0213398_14	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0213398_14	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0213398_14	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0213398_14	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0213398_15	phrog_33	82.1	1.1e-23	distal tail protein Dit	tail
UniRef90	UHGV-0213398_15	UniRef90_R6GVG8	175.0	0	Phage putative tail component N-domain protein	N/A
eggNOG-mapper	UHGV-0213398_15	1567011.A0A0A7RWN1_9VIRU	105.0	1.48e-24	Phage tail protein	N/A
Pfam	UHGV-0213398_15	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
structural_annotation	UHGV-0213398_15	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0213398_16	phrog_1272	457.4	0	tail length tape measure protein	tail
UniRef90	UHGV-0213398_16	UniRef90_A0A374JNY3	1298.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0213398_16	588581.Cpap_1264	416.0	0	Tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0213398_16	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-0213398_16	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0213398_16	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0213398_17	411468.CLOSCI_00542	146.0	2.38221e-44	N/A	N/A
structural_annotation	UHGV-0213398_17	PF17388	N/A	N/A	N/A	N/A
PHROG	UHGV-0213398_18	phrog_2175	80.6	2e-23	protein with Ig domain	other
eggNOG-mapper	UHGV-0213398_18	411468.CLOSCI_00543	201.0	0	N/A	N/A
structural_annotation	UHGV-0213398_18	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0213398_19	411468.CLOSCI_00544	136.0	4.36e-40	N/A	N/A
structural_annotation	UHGV-0213398_19	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0213398_20	phrog_5	45.4	0.000000000002	tail completion or Neck1 protein	connector
UniRef90	UHGV-0213398_20	UniRef90_UPI001C00E12E	120.0	2.46e-32	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0213398_20	457421.CBFG_03712	125.0	1.89e-35	N/A	N/A
structural_annotation	UHGV-0213398_20	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0213398_21	phrog_1951	64.7	1.1e-18	head-tail adaptor	connector
UniRef90	UHGV-0213398_21	UniRef90_UPI00189EBA11	167.0	0	phage head closure protein	N/A
NCBIFam	UHGV-0213398_21	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-0213398_21	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0213398_21	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0213398_22	phrog_5223	53.9	0.0000000000000023	neck protein	connector
UniRef90	UHGV-0213398_22	UniRef90_A0A174XIL0	125.0	1.29e-35	N/A	N/A
eggNOG-mapper	UHGV-0213398_22	411468.CLOSCI_00547	118.0	1.19e-33	N/A	N/A
PHROG	UHGV-0213398_23	phrog_10	126.6	2.1e-37	major head protein	head and packaging
UniRef90	UHGV-0213398_23	UniRef90_A0A374JNW0	719.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0213398_23	411468.CLOSCI_00548	588.0	0	Phage capsid family	N/A
Pfam	UHGV-0213398_23	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0213398_23	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-0213398_23	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0213398_24	K01358	141.0	9.99967e-42	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0213398_24	phrog_94	208.7	0	head maturation protease	head and packaging
UniRef90	UHGV-0213398_24	UniRef90_A0A374JQH6	500.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0213398_24	411468.CLOSCI_00549	338.0	0	COG COG0740 Protease subunit of ATP-dependent Clp proteases	N/A
Pfam	UHGV-0213398_24	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0213398_24	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0213398_24	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0213398_25	phrog_12	171.7	0	portal protein	head and packaging
UniRef90	UHGV-0213398_25	UniRef90_A0A374JP76	783.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0213398_25	411468.CLOSCI_00550	616.0	0	Phage portal protein	N/A
Pfam	UHGV-0213398_25	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0213398_25	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0213398_25	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0213398_26	phrog_9	343.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0213398_26	UniRef90_A0A374JP15	1102.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0213398_26	411468.CLOSCI_00551	904.0	0	COG COG4626 Phage terminase-like protein, large subunit	N/A
Pfam	UHGV-0213398_26	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0213398_26	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0213398_26	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0213398_26	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0213398_27	phrog_1066	51.7	0.000000000000016	N/A	unknown function
eggNOG-mapper	UHGV-0213398_27	411468.CLOSCI_00552	77.0	6.6e-16	N/A	N/A
KOfam	UHGV-0213398_28	K07451	40.1	0.000000000057	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0213398_28	phrog_119	63.3	3.5e-18	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0213398_28	UniRef90_A0A374JQS6	226.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0213398_28	411468.CLOSCI_00553	134.0	2.76e-39	HNH endonuclease	N/A
COG	UHGV-0213398_28	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
eggNOG-mapper	UHGV-0213398_29	411468.CLOSCI_00554	124.0	2.19e-35	N/A	N/A
PHROG	UHGV-0213398_31	phrog_824	122.5	1.8e-36	N/A	unknown function
UniRef90	UHGV-0213398_31	UniRef90_A0A374JR68	336.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0213398_31	411468.CLOSCI_00556	238.0	0	VRR_NUC	N/A
Pfam	UHGV-0213398_31	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
PHROG	UHGV-0213398_32	phrog_3584	240.6	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0213398_32	411468.CLOSCI_00558	429.0	0	N/A	N/A
structural_annotation	UHGV-0213398_32	PF21578	N/A	N/A	N/A	N/A
PHROG	UHGV-0213398_36	phrog_25385	81.5	8.1e-24	N/A	unknown function
UniRef90	UHGV-0213398_36	UniRef90_UPI00189D9989	200.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0213398_36	411468.CLOSCI_00565	116.0	1.69e-31	N/A	N/A
structural_annotation	UHGV-0213398_36	PF02970	N/A	N/A	N/A	N/A
PHROG	UHGV-0213398_37	phrog_22740	86.2	2.8e-25	N/A	unknown function
UniRef90	UHGV-0213398_37	UniRef90_UPI001E5F9499	112.0	7.87e-30	phage N-6-adenine-methyltransferase	N/A
eggNOG-mapper	UHGV-0213398_37	411468.CLOSCI_00567	116.0	1.92e-31	DNA N-6-adenine-methyltransferase	N/A
PADLOC	UHGV-0213398_37	oMTase_00015	88.5	1.3e-25	orphan methyltransferase	RM
Pfam	UHGV-0213398_37	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
PHROG	UHGV-0213398_38	phrog_20014	60.8	5.7e-18	N/A	unknown function
eggNOG-mapper	UHGV-0213398_38	1235798.C817_02590	80.1	1.46e-18	N/A	N/A
eggNOG-mapper	UHGV-0213398_40	411468.CLOSCI_00572	84.7	8.93e-20	N/A	N/A
structural_annotation	UHGV-0213398_42	PF13058	N/A	N/A	N/A	N/A
UniRef90	UHGV-0213398_45	UniRef90_A0A374JR06	134.0	6.10001e-40	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0213398_45	1226325.HMPREF1548_06746	63.5	0.0000000000031	N/A	N/A
UniRef90	UHGV-0213398_52	UniRef90_A0A374JNY9	236.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0213398_52	742735.HMPREF9467_01804	86.7	1.58e-20	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0213398_52	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0213398	Yes	34,546	44	100	1
UHGV-0089132	No	38,994	44	100	1
UHGV-1441760	No	32,242	45	91	1
UHGV-0110382	No	26,150	45	74	1
UHGV-1404946	No	25,139	45	71	1
UHGV-1398331	No	19,101	45	54	1
UHGV-1650250	No	16,878	44	48	1
UHGV-0164001	No	14,531	45	41	1
UHGV-1848475	No	10,606	44	30	1
UHGV-0163371	No	11,967	45	24	1
UHGV-1574752	No	11,967	45	24	1