vOTU vOTU-049069

vOTU: vOTU-049069

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-049069
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00200 → vGENUS-01425 → vSUBGEN-01392 → vOTU-049069
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0213962
Biosample ID	SAMN07284970
Genome length (bp)	31,493 bps
CheckV completeness	100.00% (Complete)
CDS count	49
CDS density	92.42%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83	Total connections	98	Host agreement	84.69
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia	Total connections	2	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0213962_1	phrog_6900	238.9	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0213962_1	1216932.CM240_0625	277.0	0	tape measure	N/A
COG	UHGV-0213962_1	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0213962_1	PF05537,MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-0213962_2	phrog_33	59.3	1.1e-16	distal tail protein Dit	tail
UniRef90	UHGV-0213962_2	UniRef90_A0A2X2UUQ3	164.0	0	Phage putative tail component	N/A
eggNOG-mapper	UHGV-0213962_2	536233.CLO_0897	86.3	1.14e-17	tail component	N/A
COG	UHGV-0213962_2	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0213962_2	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0213962_3	phrog_1067	328.0	0	minor head protein	head and packaging
UniRef90	UHGV-0213962_3	UniRef90_A0A1C6H6B4	503.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0213962_3	1123263.AUKY01000068_gene489	369.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0213962_3	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0213962_3	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0213962_3	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0213962_3	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0213962_4	phrog_1863	68.2	7.4e-20	N/A	unknown function
eggNOG-mapper	UHGV-0213962_4	718252.FP2_04900	110.0	6.48e-31	N/A	N/A
PHROG	UHGV-0213962_5	phrog_15594	74.0	1.8e-21	N/A	unknown function
eggNOG-mapper	UHGV-0213962_5	1118055.CAGU01000013_gene763	56.6	0.00000000415	N/A	N/A
structural_annotation	UHGV-0213962_5	PF16640,TIGR04488	N/A	N/A	N/A	N/A
PHROG	UHGV-0213962_6	phrog_31538	51.3	0.000000000000025	N/A	unknown function
eggNOG-mapper	UHGV-0213962_6	428125.CLOLEP_01433	62.4	0.000000000012	N/A	N/A
PHROG	UHGV-0213962_7	phrog_13589	184.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0213962_7	428125.CLOLEP_01434	236.0	0	N/A	N/A
PHROG	UHGV-0213962_10	phrog_881	89.4	1.9e-26	holin	lysis
UniRef90	UHGV-0213962_10	UniRef90_UPI00189D3A4F	84.7	3.24e-20	phage holin	N/A
eggNOG-mapper	UHGV-0213962_10	742740.HMPREF9474_02251	82.8	3.49e-20	Putative phage holin Dp-1	N/A
Pfam	UHGV-0213962_10	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-0213962_10	PF16938	N/A	N/A	N/A	N/A
KOfam	UHGV-0213962_11	K01448	76.4	4.2e-22	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0213962_11	phrog_435	98.3	3.6e-29	endolysin	lysis
UniRef90	UHGV-0213962_11	UniRef90_A0A810PZ73	428.0	0	SPOR domain-containing protein	N/A
eggNOG-mapper	UHGV-0213962_11	697281.Mahau_0053	138.0	6.97e-37	n-acetylmuramoyl-l-alanine amidase	N/A
Pfam	UHGV-0213962_11	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-0213962_11	PF08230	N/A	N/A	CW_7 repeat	CW_7
Pfam	UHGV-0213962_11	PF05036	N/A	N/A	SPOR domain	SPOR
COG	UHGV-0213962_11	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0213962_11	PF01520,PF08230,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A
UniRef90	UHGV-0213962_13	UniRef90_A0A6N3FXW7	146.0	6.5861e-44	Helix-turn-helix	N/A
eggNOG-mapper	UHGV-0213962_13	742738.HMPREF9460_04059	76.6	1.67e-16	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0213962_13	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0213962_13	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0213962_13	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0213962_14	K06400	307.2	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0213962_14	phrog_95	324.1	0	integrase	integration and excision
UniRef90	UHGV-0213962_14	UniRef90_A0A352ULE7	477.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0213962_14	1120746.CCNL01000010_gene1415	370.0	0	recombinase activity	N/A
Pfam	UHGV-0213962_14	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0213962_14	PF07508	N/A	N/A	Recombinase	Recombinase
COG	UHGV-0213962_14	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0213962_14	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0213962_15	1262449.CP6013_2082	148.0	4.76441e-44	N/A	N/A
structural_annotation	UHGV-0213962_15	PF11631,TIGR03066	N/A	N/A	N/A	N/A
UniRef90	UHGV-0213962_16	UniRef90_A0A3D1I232	80.9	5.39e-18	zinc_ribbon_2 domain-containing protein	N/A
structural_annotation	UHGV-0213962_16	TIGR04165,COG3478	N/A	N/A	N/A	N/A
UniRef90	UHGV-0213962_17	UniRef90_UPI001E54DE4F	76.6	5.49e-16	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0213962_17	693746.OBV_19770	49.7	0.00000422	sequence-specific DNA binding	N/A
Pfam	UHGV-0213962_17	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0213962_17	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0213962_17	PF01381,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0213962_18	K22300	59.1	1e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0213962_18	phrog_3	43.5	0.000000000014	transcriptional repressor	transcription regulation
UniRef90	UHGV-0213962_18	UniRef90_UPI00136DC5C3	51.6	0.000000267	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0213962_18	1410650.JHWL01000006_gene1493	51.6	0.000000795	sequence-specific DNA binding	N/A
Pfam	UHGV-0213962_18	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0213962_18	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0213962_18	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0213962_20	phrog_6499	105.3	3.6e-31	transcriptional regulator	transcription regulation
UniRef90	UHGV-0213962_20	UniRef90_UPI001BB4836B	110.0	4.41e-28	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0213962_20	742738.HMPREF9460_04043	110.0	1.15e-28	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0213962_20	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0213962_20	COG1813	N/A	N/A	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	N/A
structural_annotation	UHGV-0213962_20	PF01381,MF_00535,NF040522,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0213962_21	PF21327	N/A	N/A	N/A	N/A
PHROG	UHGV-0213962_23	phrog_11233	76.3	4.6e-22	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0213962_23	UniRef90_A9VQX9	84.7	5.5e-16	Phg_2220_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0213962_23	742738.HMPREF9460_04047	147.0	1.52999e-40	DnaD domain protein	N/A
COG	UHGV-0213962_23	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0213962_23	PF13463,NF040642,COG1846	N/A	N/A	N/A	N/A
KOfam	UHGV-0213962_24	K02314	276.3	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0213962_24	phrog_19	236.7	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0213962_24	UniRef90_UPI00195856D7	389.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0213962_24	693746.OBV_27440	263.0	0	DnaB-like helicase N terminal domain	N/A
Pfam	UHGV-0213962_24	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0213962_24	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0213962_24	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0213962_24	PF03796,PF00772,MF_04155,NF005240,COG0305	N/A	N/A	N/A	N/A
KOfam	UHGV-0213962_25	K03496	197.7	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0213962_25	phrog_164	148.7	4.06377e-44	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0213962_25	UniRef90_UPI000318E277	266.0	0	ParA family protein	N/A
eggNOG-mapper	UHGV-0213962_25	1226322.HMPREF1545_00097	263.0	0	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	N/A
Pfam	UHGV-0213962_25	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0213962_25	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0213962_25	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
KOfam	UHGV-0213962_26	K03497	88.7	4.7e-26	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0213962_26	phrog_27290	334.7	0	N/A	unknown function
UniRef90	UHGV-0213962_26	UniRef90_A0A3D4EJM0	310.0	0	Chromosome partitioning protein ParB	N/A
eggNOG-mapper	UHGV-0213962_26	742738.HMPREF9460_00856	267.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0213962_26	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0213962_26	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0213962_26	PF02195,MF_02015,TIGR04285,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-0213962_29	phrog_38832	58.7	4.7e-17	N/A	unknown function
eggNOG-mapper	UHGV-0213962_29	665956.HMPREF1032_03087	77.0	9.45e-16	N/A	N/A
Pfam	UHGV-0213962_30	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
dbAPIS	UHGV-0213962_30	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-0213962_30	PF14354,NF007260	N/A	N/A	N/A	N/A
PHROG	UHGV-0213962_34	phrog_3584	68.5	9.9e-20	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0213962_34	693746.OBV_19950	120.0	2.26e-30	N/A	N/A
structural_annotation	UHGV-0213962_34	PF11726	N/A	N/A	N/A	N/A
UniRef90	UHGV-0213962_35	UniRef90_UPI001F232519	102.0	3.61e-27	cysteine-rich KTR domain-containing protein	N/A
eggNOG-mapper	UHGV-0213962_35	1226322.HMPREF1545_00110	99.8	4.86e-27	Cysteine-rich KTR	N/A
Pfam	UHGV-0213962_35	PF14205	N/A	N/A	Cysteine-rich KTR	Cys_rich_KTR
structural_annotation	UHGV-0213962_35	PF14205	N/A	N/A	N/A	N/A
PHROG	UHGV-0213962_36	phrog_119	75.3	8.2e-22	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0213962_36	UniRef90_G9YSB5	150.0	1.26117e-44	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-0213962_36	1235792.C808_00081	90.5	1.31e-21	HNH nucleases	N/A
Pfam	UHGV-0213962_36	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0213962_36	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0213962_37	phrog_5110	61.4	1.3e-17	terminase small subunit	head and packaging
UniRef90	UHGV-0213962_37	UniRef90_UPI00195E8788	115.0	2.97e-31	P27 family phage terminase small subunit	N/A
Pfam	UHGV-0213962_37	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0213962_37	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0213962_38	phrog_9	237.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-0213962_38	UniRef90_A0A6I7GGF0	917.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0213962_38	1235792.C808_00083	609.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0213962_38	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0213962_38	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0213962_38	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0213962_38	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0213962_39	phrog_12	127.9	4.7e-38	portal protein	head and packaging
UniRef90	UHGV-0213962_39	UniRef90_UPI0018755FA4	501.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0213962_39	349161.Dred_2606	304.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0213962_39	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0213962_39	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0213962_39	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0213962_39	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0213962_40	K01358	139.6	3.30006e-41	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0213962_40	phrog_94	260.6	0	head maturation protease	head and packaging
UniRef90	UHGV-0213962_40	UniRef90_A0A1Y4BT12	335.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0213962_40	349161.Dred_2605	311.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0213962_40	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0213962_40	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0213962_40	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0213962_41	phrog_10	146.9	2.10195e-43	major head protein	head and packaging
UniRef90	UHGV-0213962_41	UniRef90_G9YSC0	693.0	0	Cadherin-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0213962_41	1235792.C808_00086	420.0	0	Phage capsid family	N/A
Pfam	UHGV-0213962_41	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0213962_41	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0213962_41	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0213962_41	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0213962_41	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0213962_42	phrog_749	61.5	1.4e-17	N/A	unknown function
eggNOG-mapper	UHGV-0213962_42	349161.Dred_2603	83.2	2e-19	N/A	N/A
PHROG	UHGV-0213962_43	phrog_19734	117.2	1.1e-34	N/A	unknown function
UniRef90	UHGV-0213962_43	UniRef90_A0A6I7GNS7	127.0	2.9e-35	Phage head closure protein	N/A
eggNOG-mapper	UHGV-0213962_43	349161.Dred_2602	85.1	1.18e-19	N/A	N/A
structural_annotation	UHGV-0213962_43	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0213962_44	999413.HMPREF1094_02005	89.4	1.49e-21	N/A	N/A
structural_annotation	UHGV-0213962_44	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0213962_45	phrog_5	47.4	0.00000000000043	tail completion or Neck1 protein	connector
UniRef90	UHGV-0213962_45	UniRef90_R6UNR2	139.0	2.68e-39	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0213962_45	908340.HMPREF9406_2573	139.0	4.49e-40	N/A	N/A
structural_annotation	UHGV-0213962_45	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0213962_46	phrog_88	90.2	2.5e-26	major tail protein	tail
UniRef90	UHGV-0213962_46	UniRef90_UPI0018771F27	126.0	4.54e-33	phage tail protein	N/A
NCBIFam	UHGV-0213962_46	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0213962_46	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0213962	Yes	31,493	58	100	1