vOTU vOTU-049105

vOTU: vOTU-049105

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-049105
Number of genomes	7
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00025 → vSUBFAM-02950 → vGENUS-03951 → vSUBGEN-16757 → vOTU-049105
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruthenibacterium → Ruthenibacterium lactatiformans
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0216401
Biosample ID	SAMN13241759
Genome length (bp)	41,978 bps
CheckV completeness	100.00% (Complete)
CDS count	64
CDS density	94.11%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruthenibacterium → Ruthenibacterium lactatiformans	Total connections	108	Host agreement	97.22
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruthenibacterium → Ruthenibacterium lactatiformans	Total connections	111	Host agreement	99.1

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0216401_1	phrog_1328	97.5	1.1e-28	major head protein	head and packaging
UniRef90	UHGV-0216401_1	UniRef90_UPI000B8B2D48	319.0	0	N/A	N/A
eggNOG-mapper	UHGV-0216401_1	665956.HMPREF1032_03619	423.0	0	N/A	N/A
Pfam	UHGV-0216401_1	PF17236	N/A	N/A	N/A	DUF5309
structural_annotation	UHGV-0216401_1	PF17236,NF033394	N/A	N/A	N/A	N/A
PHROG	UHGV-0216401_2	phrog_172	95.3	7.3e-28	head scaffolding protein	head and packaging
UniRef90	UHGV-0216401_2	UniRef90_J7MAY1	69.3	0.0000000000385	Phage scaffold protein	N/A
eggNOG-mapper	UHGV-0216401_2	1314.HKU360_01488	69.3	0.00000000000645	N/A	N/A
Pfam	UHGV-0216401_2	PF14265	N/A	N/A	N/A	DUF4355
PHROG	UHGV-0216401_5	phrog_115	49.8	1e-16	minor head protein	head and packaging
UniRef90	UHGV-0216401_5	UniRef90_G9RRL3	680.0	0	SPP1 gp7 family phage putative head morphogenesis protein	N/A
eggNOG-mapper	UHGV-0216401_5	665956.HMPREF1032_03615	680.0	0	cell adhesion	N/A
Pfam	UHGV-0216401_5	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-0216401_5	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-0216401_5	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0216401_5	TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-0216401_6	phrog_64	201.2	0	portal protein	head and packaging
UniRef90	UHGV-0216401_6	UniRef90_G9RRL2	950.0	0	SPP1 family phage portal protein	N/A
eggNOG-mapper	UHGV-0216401_6	665956.HMPREF1032_03614	950.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0216401_6	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0216401_6	PF05133,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
PHROG	UHGV-0216401_7	phrog_30251	647.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-0216401_7	UniRef90_UPI0004E0F8AE	634.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0216401_7	665956.HMPREF1032_03613	975.0	0	TIGRFAM phage	N/A
NCBIFam	UHGV-0216401_7	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-0216401_7	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0216401_7	PF17289,PF03237,MF_04147,NF033889,COG5410,COG5362	N/A	N/A	N/A	N/A
KOfam	UHGV-0216401_8	K07474	53.9	0.000000000000006	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0216401_8	phrog_51	60.0	1.4e-17	terminase small subunit	head and packaging
UniRef90	UHGV-0216401_8	UniRef90_A0A7X1LX59	134.0	5.75e-38	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0216401_8	1230341.MJ3_13584	87.4	3.2e-20	Terminase, small subunit	N/A
Pfam	UHGV-0216401_8	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0216401_8	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0216401_8	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-0216401_9	K00571	155.9	0	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0216401_9	phrog_12862	182.5	0	N/A	unknown function
UniRef90	UHGV-0216401_9	UniRef90_G9RRK9	511.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0216401_9	665956.HMPREF1032_03611	511.0	0	DNA methylase	N/A
PADLOC	UHGV-0216401_9	MTase_II_00037	141.2	0	Type II methyltransferase	RM
Pfam	UHGV-0216401_9	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0216401_9	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0216401_9	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0216401_10	PF07374	N/A	N/A	N/A	N/A
UniRef90	UHGV-0216401_16	UniRef90_A0A7G9WJW0	55.5	0.000000896	Lar family restriction alleviation protein	N/A
structural_annotation	UHGV-0216401_16	PF06257,NF011232	N/A	N/A	N/A	N/A
PHROG	UHGV-0216401_17	phrog_38832	78.6	1.6e-24	N/A	unknown function
eggNOG-mapper	UHGV-0216401_17	665956.HMPREF1032_03087	152.0	2.8026e-45	N/A	N/A
PHROG	UHGV-0216401_18	phrog_757	249.9	0	DNA methyltransferase	other
UniRef90	UHGV-0216401_18	UniRef90_A0A372V4B7	405.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0216401_18	485918.Cpin_3834	271.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0216401_18	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0216401_18	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0216401_19	1232449.BAHV02000018_gene1537	129.0	1.51e-36	N/A	N/A
KOfam	UHGV-0216401_21	K01160	48.3	0.00000000000025	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0216401_21	phrog_140	127.1	1e-37	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0216401_21	UniRef90_A6V3Y0	122.0	6.4e-33	Endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-0216401_21	665956.HMPREF1032_03604	303.0	0	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0216401_21	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0216401_21	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0216401_21	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0216401_22	phrog_16304	40.7	0.000000000035	N/A	unknown function
UniRef90	UHGV-0216401_22	UniRef90_G9RRK1	380.0	0	N/A	N/A
Pfam	UHGV-0216401_22	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-0216401_22	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
PHROG	UHGV-0216401_23	phrog_36563	78.2	1.2e-22	N/A	unknown function
eggNOG-mapper	UHGV-0216401_23	665956.HMPREF1032_03602	334.0	0	N/A	N/A
KOfam	UHGV-0216401_24	K06167	73.8	2.2e-21	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	N/A
PHROG	UHGV-0216401_24	phrog_392	190.5	0	metal-dependent hydrolase	other
UniRef90	UHGV-0216401_24	UniRef90_UPI001066B38E	457.0	0	MBL fold metallo-hydrolase	N/A
eggNOG-mapper	UHGV-0216401_24	665956.HMPREF1032_03601	406.0	0	Metallo-beta-lactamase superfamily	N/A
Pfam	UHGV-0216401_24	PF12706	N/A	N/A	Beta-lactamase superfamily domain	Lactamase_B_2
COG	UHGV-0216401_24	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-0216401_24	PF02112,MF_01818,NF041851,COG1234	N/A	N/A	N/A	N/A
PHROG	UHGV-0216401_25	phrog_2185	297.2	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0216401_25	UniRef90_A0A4R1QSH1	417.0	0	RecT family protein	N/A
eggNOG-mapper	UHGV-0216401_25	665956.HMPREF1032_03600	720.0	0	N/A	N/A
KOfam	UHGV-0216401_26	K19171	96.5	2.2e-28	dndD; DNA sulfur modification protein DndD	N/A
PHROG	UHGV-0216401_26	phrog_77	200.1	0	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0216401_26	UniRef90_G9RRJ7	1230.0	0	AAA_23 domain-containing protein	N/A
eggNOG-mapper	UHGV-0216401_26	665956.HMPREF1032_03599	1230.0	0	nuclear chromosome segregation	N/A
COG	UHGV-0216401_26	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0216401_26	PF02463,MF_00449,NF041034,COG0419	N/A	N/A	N/A	N/A
PHROG	UHGV-0216401_28	phrog_1733	66.5	2.9e-19	N/A	unknown function
UniRef90	UHGV-0216401_28	UniRef90_UPI001967A828	943.0	0	cell envelope integrity protein TolA	N/A
eggNOG-mapper	UHGV-0216401_28	665956.HMPREF1032_03597	1046.0	0	DNA binding	N/A
COG	UHGV-0216401_28	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0216401_28	PF03677	N/A	N/A	N/A	N/A
PHROG	UHGV-0216401_31	phrog_3624	46.5	0.00000000000039	N/A	unknown function
PHROG	UHGV-0216401_32	phrog_130	151.7	5.60519e-45	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0216401_32	UniRef90_A0A1Y4IFX8	181.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-0216401_32	696281.Desru_3569	159.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0216401_32	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
COG	UHGV-0216401_32	COG3617	N/A	N/A	Prophage antirepressor	N/A
UniRef90	UHGV-0216401_35	UniRef90_UPI00196843E1	130.0	1.55e-38	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0216401_35	1163671.JAGI01000002_gene3923	67.0	0.0000000000000526	N/A	N/A
Pfam	UHGV-0216401_35	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0216401_35	PF05339,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0216401_36	K01356	148.5	6.30584e-44	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0216401_36	phrog_4	121.6	7.8e-36	transcriptional repressor	transcription regulation
UniRef90	UHGV-0216401_36	UniRef90_UPI0019671551	404.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0216401_36	657322.FPR_01410	197.0	0	N/A	N/A
Pfam	UHGV-0216401_36	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0216401_36	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0216401_36	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0216401_36	PF00717,PF01381,MF_00015,TIGR00498,COG1974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0216401_38	1410624.JNKK01000069_gene1367	132.0	3.2e-39	N/A	N/A
UniRef90	UHGV-0216401_39	UniRef90_UPI0009E4A21A	199.0	0	N/A	N/A
eggNOG-mapper	UHGV-0216401_39	718252.FP2_11360	141.0	7.00649e-43	N/A	N/A
Pfam	UHGV-0216401_39	PF13711	N/A	N/A	N/A	DUF4160
COG	UHGV-0216401_40	COG2932	N/A	N/A	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	N/A
KOfam	UHGV-0216401_41	K06400	398.2	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0216401_41	phrog_95	396.6	0	integrase	integration and excision
UniRef90	UHGV-0216401_41	UniRef90_UPI000678A925	955.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0216401_41	883156.HMPREF9282_01201	338.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0216401_41	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0216401_41	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0216401_41	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0216401_41	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0216401_41	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-0216401_42	phrog_1129	68.6	6e-20	holin	lysis
UniRef90	UHGV-0216401_42	UniRef90_A0A0D8J2M2	177.0	0	Enolase	N/A
eggNOG-mapper	UHGV-0216401_42	665956.HMPREF1032_03272	155.0	0	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0216401_42	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0216401_42	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0216401_43	phrog_1863	75.6	3.4e-22	N/A	unknown function
eggNOG-mapper	UHGV-0216401_43	665956.HMPREF1032_02709	152.0	0	N/A	N/A
KOfam	UHGV-0216401_44	K21472	53.3	0.0000000000000052	lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-]	N/A
UniRef90	UHGV-0216401_44	UniRef90_UPI001966E044	544.0	0	peptidoglycan DD-metalloendopeptidase family protein	N/A
eggNOG-mapper	UHGV-0216401_44	665956.HMPREF1032_02708	541.0	0	N/A	N/A
Pfam	UHGV-0216401_44	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
structural_annotation	UHGV-0216401_44	PF01551,NF040883,COG0739	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0216401_45	PF11514	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0216401_47	665956.HMPREF1032_03918	91.7	8.27e-21	prophage protein Bartonella henselae str. Houston-1 gi 49237922 emb CAF27125.1	N/A
eggNOG-mapper	UHGV-0216401_49	665956.HMPREF1032_02705	265.0	0	N/A	N/A
KOfam	UHGV-0216401_51	K14059	157.9	0	int; integrase	N/A
PHROG	UHGV-0216401_51	phrog_1	159.4	0	integrase	integration and excision
UniRef90	UHGV-0216401_51	UniRef90_G9RT37	755.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0216401_51	665956.HMPREF1032_02703	755.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0216401_51	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0216401_51	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0216401_51	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0216401_52	phrog_9116	115.6	2.6e-34	tail protein	tail
eggNOG-mapper	UHGV-0216401_52	665956.HMPREF1032_03054	528.0	0	cellulose 1,4-beta-cellobiosidase activity	N/A
Pfam	UHGV-0216401_52	PF07484	N/A	N/A	Phage Tail Collar Domain	Collar
COG	UHGV-0216401_52	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
PHROG	UHGV-0216401_53	phrog_13879	160.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0216401_53	665956.HMPREF1032_03055	1236.0	0	N/A	N/A
structural_annotation	UHGV-0216401_53	PF03256,PF16466,PF13550,MF_00813,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0216401_54	phrog_1194	69.4	4.1e-20	N/A	unknown function
eggNOG-mapper	UHGV-0216401_54	665956.HMPREF1032_03629	293.0	0	N/A	N/A
structural_annotation	UHGV-0216401_54	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0216401_55	phrog_1535	148.3	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0216401_55	665956.HMPREF1032_03628	1126.0	0	domain protein	N/A
COG	UHGV-0216401_55	COG1511	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0216401_58	665956.HMPREF1032_03625	308.0	0	N/A	N/A
structural_annotation	UHGV-0216401_58	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0216401_59	665956.HMPREF1032_03624	270.0	0	N/A	N/A
UniRef90	UHGV-0216401_60	UniRef90_A0A416N3K7	55.8	0.00000141	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0216401_60	665956.HMPREF1032_03623	353.0	0	N/A	N/A
structural_annotation	UHGV-0216401_60	PF20039,TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0216401_61	665956.HMPREF1032_03622	250.0	0	N/A	N/A
eggNOG-mapper	UHGV-0216401_62	665956.HMPREF1032_03621	197.0	0	N/A	N/A
PHROG	UHGV-0216401_64	phrog_1328	60.0	3.3e-17	major head protein	head and packaging
eggNOG-mapper	UHGV-0216401_64	665956.HMPREF1032_03619	187.0	0	N/A	N/A
Pfam	UHGV-0216401_64	PF17236	N/A	N/A	N/A	DUF5309

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0216401	Yes	41,978	54	100	1
UHGV-0105856	No	33,071	54	83	1
UHGV-0158257	No	25,932	55	65	1
UHGV-0124740	No	25,864	54	65	1
UHGV-0391752	No	18,276	53	46	1
UHGV-0073746	No	15,288	53	39	1
UHGV-0092796	No	12,232	55	31	1