vOTU vOTU-049115

vOTU: vOTU-049115

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-049115
Number of genomes	3
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00316 → vGENUS-00408 → vSUBGEN-02302 → vOTU-049115
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0217059
Biosample ID	N/A
Genome length (bp)	36,590 bps
CheckV completeness	100.00% (Complete)
CDS count	59
CDS density	91.93%
tRNA count	2
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis	Total connections	345	Host agreement	96.81
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis	Total connections	228	Host agreement	96.93

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0217059_1	K06400	386.4	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0217059_1	phrog_95	371.5	0	integrase	integration and excision
UniRef90	UHGV-0217059_1	UniRef90_A0A2V2F5B5	671.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0217059_1	1280692.AUJL01000028_gene1928	300.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0217059_1	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0217059_1	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0217059_1	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0217059_1	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0217059_1	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-0217059_2	phrog_22683	148.8	7.00649e-45	N/A	unknown function
UniRef90	UHGV-0217059_2	UniRef90_A0A3E2U205	146.0	3.22299e-44	N/A	N/A
eggNOG-mapper	UHGV-0217059_2	482234.SCAZ3_03515	133.0	1.2e-39	N/A	N/A
AcrCatalog	UHGV-0217059_2	cluster_3962	122.0	4.57e-40	NA	N/A
Pfam	UHGV-0217059_2	PF13783	N/A	N/A	N/A	DUF4177
structural_annotation	UHGV-0217059_2	PF13783,NF008362,COG3499	N/A	N/A	N/A	N/A
KOfam	UHGV-0217059_3	K22300	57.9	2.5e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0217059_3	phrog_8	49.9	0.000000000000068	transcriptional regulator	transcription regulation
UniRef90	UHGV-0217059_3	UniRef90_E2ZI88	102.0	3.99e-25	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0217059_3	748224.HMPREF9436_01379	102.0	6.69e-26	N/A	N/A
Pfam	UHGV-0217059_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0217059_3	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-0217059_15	phrog_3584	205.6	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0217059_15	UniRef90_UPI001C02C5E0	160.0	3.08286e-44	N/A	N/A
eggNOG-mapper	UHGV-0217059_15	718252.FP2_16510	146.0	1.1e-39	N/A	N/A
structural_annotation	UHGV-0217059_15	PF01446	N/A	N/A	N/A	N/A
PHROG	UHGV-0217059_16	phrog_36399	52.0	0.000000000000015	N/A	unknown function
PHROG	UHGV-0217059_17	phrog_8470	270.8	0	N/A	unknown function
UniRef90	UHGV-0217059_17	UniRef90_UPI0019580896	186.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0217059_17	1226322.HMPREF1545_00100	189.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0217059_17	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
PHROG	UHGV-0217059_18	phrog_15609	70.2	2.1e-20	N/A	unknown function
eggNOG-mapper	UHGV-0217059_18	641112.ACOK01000073_gene2872	65.1	0.00000000249	N/A	N/A
structural_annotation	UHGV-0217059_18	PF11300,NF038070	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0217059_20	693746.OBV_18010	81.3	2.97e-17	N/A	N/A
structural_annotation	UHGV-0217059_20	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0217059_22	phrog_338	60.3	4e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0217059_22	UniRef90_UPI0015F33F36	176.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0217059_22	748224.HMPREF9436_01465	177.0	0	N/A	N/A
PHROG	UHGV-0217059_23	phrog_1066	57.9	1.7e-16	N/A	unknown function
eggNOG-mapper	UHGV-0217059_23	445975.COLSTE_02166	76.6	5.61e-16	N/A	N/A
AcrCatalog	UHGV-0217059_23	cluster_154855	70.9	3.77e-18	NA	N/A
PHROG	UHGV-0217059_24	phrog_9	139.6	2.50006e-41	terminase large subunit	head and packaging
UniRef90	UHGV-0217059_24	UniRef90_UPI001D0087E2	458.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0217059_24	1410630.JNKP01000001_gene1822	631.0	0	phage terminase, large subunit	N/A
COG	UHGV-0217059_24	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0217059_24	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0217059_25	phrog_104	211.1	0	portal protein	head and packaging
UniRef90	UHGV-0217059_25	UniRef90_A0A3E2U200	749.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0217059_25	748224.HMPREF9436_01468	763.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0217059_25	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0217059_25	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0217059_26	K11044	54.4	2.7e-16	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	N/A
PHROG	UHGV-0217059_26	phrog_193	121.7	6.2e-36	head maturation protease	head and packaging
UniRef90	UHGV-0217059_26	UniRef90_A0A6N8H118	358.0	0	CdiA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0217059_26	748224.HMPREF9436_01469	403.0	0	N/A	N/A
Pfam	UHGV-0217059_26	PF03496	N/A	N/A	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
COG	UHGV-0217059_26	COG5529	N/A	N/A	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	N/A
structural_annotation	UHGV-0217059_26	PF03496,MF_04139,NF040688	N/A	N/A	N/A	N/A
UniRef90	UHGV-0217059_28	UniRef90_R5KEQ8	50.1	0.000000721	YjcQ protein	N/A
PHROG	UHGV-0217059_30	phrog_194	84.4	1.7e-24	head scaffolding protein	head and packaging
UniRef90	UHGV-0217059_30	UniRef90_D4K444	158.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0217059_30	748224.HMPREF9436_03336	159.0	0	Phage minor structural protein GP20	N/A
Pfam	UHGV-0217059_30	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0217059_30	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0217059_31	phrog_10	140.9	1.10002e-41	major head protein	head and packaging
UniRef90	UHGV-0217059_31	UniRef90_A0A1Y4TJU9	518.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0217059_31	748224.HMPREF9436_00690	451.0	0	Phage capsid family	N/A
Pfam	UHGV-0217059_31	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0217059_31	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0217059_31	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0217059_31	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0217059_33	phrog_137	54.2	0.0000000000000017	head-tail adaptor Ad1	connector
UniRef90	UHGV-0217059_33	UniRef90_E2ZGA8	163.0	0	Phage protein Gp19/Gp15/Gp42	N/A
structural_annotation	UHGV-0217059_33	PF09355	N/A	N/A	N/A	N/A
PHROG	UHGV-0217059_34	phrog_501	72.7	5.1e-21	head closure Hc1	connector
eggNOG-mapper	UHGV-0217059_34	748224.HMPREF9436_00693	169.0	0	N/A	N/A
structural_annotation	UHGV-0217059_34	PF12206,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0217059_35	phrog_387	60.3	2.8e-17	neck protein	connector
eggNOG-mapper	UHGV-0217059_35	748224.HMPREF9436_00694	92.0	2.56e-23	N/A	N/A
PHROG	UHGV-0217059_36	phrog_123	62.3	9.2e-18	tail terminator	connector
UniRef90	UHGV-0217059_36	UniRef90_D2BQF4	83.2	2.17e-18	N/A	N/A
eggNOG-mapper	UHGV-0217059_36	1231377.C426_1732	87.0	1.12e-20	N/A	N/A
structural_annotation	UHGV-0217059_36	PF06141	N/A	N/A	N/A	N/A
PHROG	UHGV-0217059_37	phrog_117	178.7	0	major tail protein	tail
UniRef90	UHGV-0217059_37	UniRef90_A0A1Q6T308	231.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0217059_37	748224.HMPREF9436_00696	216.0	0	domain, Protein	N/A
COG	UHGV-0217059_37	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0217059_37	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0217059_38	phrog_1526	82.0	5.6e-24	N/A	unknown function
UniRef90	UHGV-0217059_38	UniRef90_D2BQF7	68.2	0.000000000000428	N/A	N/A
eggNOG-mapper	UHGV-0217059_38	879308.HMPREF9130_1240	80.9	8.75e-19	N/A	N/A
PHROG	UHGV-0217059_39	phrog_1633	70.9	9e-21	N/A	unknown function
UniRef90	UHGV-0217059_39	UniRef90_UPI000986795C	73.9	0.0000000000000127	N/A	N/A
eggNOG-mapper	UHGV-0217059_39	883110.HMPREF9260_00651	68.2	0.000000000000381	N/A	N/A
structural_annotation	UHGV-0217059_39	PF17318	N/A	N/A	N/A	N/A
PHROG	UHGV-0217059_40	phrog_6900	262.4	0	tail length tape measure protein	tail
UniRef90	UHGV-0217059_40	UniRef90_A0A1C5MMN2	393.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0217059_40	1280698.AUJS01000007_gene1047	387.0	0	nuclear chromosome segregation	N/A
COG	UHGV-0217059_40	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0217059_40	MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-0217059_41	phrog_1194	42.4	0.0000000000091	N/A	unknown function
eggNOG-mapper	UHGV-0217059_41	411471.SUBVAR_06933	101.0	6.23e-26	N/A	N/A
structural_annotation	UHGV-0217059_41	PF20458,TIGR02126,COG4718	N/A	N/A	N/A	N/A
PHROG	UHGV-0217059_42	phrog_18190	81.2	2.3e-32	N/A	unknown function
eggNOG-mapper	UHGV-0217059_42	411471.SUBVAR_06932	313.0	0	N/A	N/A
structural_annotation	UHGV-0217059_42	PF05954,PF00629,PF03424,NF033848,NF033675,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0217059_43	phrog_18444	80.6	1.1e-23	N/A	unknown function
UniRef90	UHGV-0217059_43	UniRef90_UPI00156E9A45	57.8	0.00000000102	peptide chain release factor 2	N/A
eggNOG-mapper	UHGV-0217059_43	1294142.CINTURNW_1707	58.9	0.0000000000598	N/A	N/A
structural_annotation	UHGV-0217059_45	PF12245	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0217059_46	428125.CLOLEP_01433	51.6	0.000000291	N/A	N/A
PHROG	UHGV-0217059_47	phrog_13589	182.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0217059_47	742733.HMPREF9469_05009	227.0	0	N/A	N/A
PHROG	UHGV-0217059_49	phrog_19111	48.9	0.000000000000035	N/A	unknown function
eggNOG-mapper	UHGV-0217059_49	1232443.BAIA02000078_gene14	72.8	0.00000000000523	nuclear chromosome segregation	N/A
COG	UHGV-0217059_49	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
PHROG	UHGV-0217059_50	phrog_24267	58.1	1.9e-16	N/A	unknown function
eggNOG-mapper	UHGV-0217059_50	508419.F8J176_9CAUD	113.0	5.86e-25	peptidoglycan catabolic process	N/A
Pfam	UHGV-0217059_50	PF11133	N/A	N/A	Head fiber protein	Phage_head_fibr
Pfam	UHGV-0217059_50	PF03406	N/A	N/A	Phage tail fibre repeat	Phage_fiber_2
KOfam	UHGV-0217059_51	K07273	185.7	0	acm; lysozyme	N/A
PHROG	UHGV-0217059_51	phrog_291	159.9	0	endolysin	lysis
UniRef90	UHGV-0217059_51	UniRef90_A0A367G061	534.0	0	Peptidase_M23 domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-0217059_51	411471.SUBVAR_06927	322.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0217059_51	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
Pfam	UHGV-0217059_51	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0217059_51	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0217059_51	PF01551,PF01183,NF040883,COG0739,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0217059_52	phrog_355	59.4	6.3e-17	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0217059_52	UniRef90_UPI00156F0E9C	137.0	5.21e-40	N/A	N/A
eggNOG-mapper	UHGV-0217059_52	411473.RUMCAL_00360	128.0	1.64e-37	N/A	N/A
structural_annotation	UHGV-0217059_52	PF14359,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0217059_53	phrog_4105	77.3	1.8e-22	N/A	unknown function
eggNOG-mapper	UHGV-0217059_53	657322.FPR_27220	85.5	1.46e-19	N/A	N/A
PHROG	UHGV-0217059_54	phrog_918	121.6	2.1e-36	N/A	unknown function
UniRef90	UHGV-0217059_54	UniRef90_UPI00115A7D93	123.0	5.16e-35	N/A	N/A
eggNOG-mapper	UHGV-0217059_54	469618.FVAG_01307	121.0	6.7e-35	N/A	N/A
Pfam	UHGV-0217059_54	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0217059_54	PF19791	N/A	N/A	N/A	N/A
PHROG	UHGV-0217059_55	phrog_1129	63.1	3.5e-18	holin	lysis
UniRef90	UHGV-0217059_55	UniRef90_A0A367FT42	168.0	0	Enolase	N/A
eggNOG-mapper	UHGV-0217059_55	693746.OBV_13280	113.0	1.24e-31	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0217059_55	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0217059_55	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0217059_56	phrog_13470	52.1	0.000000000000013	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0217059_56	UniRef90_A0A0U5PL36	147.0	2.5896e-42	AP2 domain protein	N/A
eggNOG-mapper	UHGV-0217059_56	1304866.K413DRAFT_4685	142.0	3.92994e-41	N/A	N/A
UniRef90	UHGV-0217059_57	UniRef90_A0A1Q9JGI6	75.1	0.0000000000000148	RHH_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0217059_57	1118055.CAGU01000028_gene99	94.0	1.17e-22	N/A	N/A
Pfam	UHGV-0217059_57	PF01402	N/A	N/A	Ribbon-helix-helix protein, copG family	RHH_1
structural_annotation	UHGV-0217059_57	PF03869,NF041793,COG4691	N/A	N/A	N/A	N/A
PHROG	UHGV-0217059_59	phrog_1129	47.3	0.00000000000027	holin	lysis
UniRef90	UHGV-0217059_59	UniRef90_A0A367FT42	132.0	1.33e-38	Enolase	N/A
eggNOG-mapper	UHGV-0217059_59	1007096.BAGW01000036_gene2663	82.8	1.08e-19	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0217059_59	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0217059	Yes	36,590	57	100	1
UHGV-0097864	No	28,511	58	80	1
UHGV-0044242	No	17,010	59	48	1