vOTU vOTU-049122

vOTU: vOTU-049122

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-049122
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00040 → vSUBFAM-00520 → vGENUS-00507 → vSUBGEN-13224 → vOTU-049122
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0217424
Biosample ID	SAMN14270997
Genome length (bp)	39,496 bps
CheckV completeness	100.00% (Complete)
CDS count	55
CDS density	86.58%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus	Total connections	20	Host agreement	75
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → F23-B02 → F23-B02 sp001916715	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0217424_2	phrog_1770	102.2	5e-30	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0217424_2	UniRef90_A0A1L8CM45	100.0	2.89e-24	Crossover junction endodeoxyribonuclease RuvC	N/A
eggNOG-mapper	UHGV-0217424_2	994601.G9BW80_9CAUD	97.8	6.6e-24	nucleic acid binding	N/A
structural_annotation	UHGV-0217424_2	PF16921,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
PHROG	UHGV-0217424_3	phrog_2562	121.4	9.5e-36	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0217424_3	UniRef90_UPI00189A2195	196.0	0	N/A	N/A
eggNOG-mapper	UHGV-0217424_3	1235790.C805_00030	179.0	0	N/A	N/A
Pfam	UHGV-0217424_3	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-0217424_3	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0217424_4	PF08962	N/A	N/A	N/A	N/A
PHROG	UHGV-0217424_6	phrog_561	127.5	3.6e-38	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0217424_6	UniRef90_A0A174RC35	228.0	0	RecT family	N/A
eggNOG-mapper	UHGV-0217424_6	648757.Rvan_1470	156.0	4.90454e-44	N/A	N/A
Pfam	UHGV-0217424_6	PF03837	N/A	N/A	RecT family	RecT
structural_annotation	UHGV-0217424_6	PF03837,TIGR01913	N/A	N/A	N/A	N/A
PHROG	UHGV-0217424_8	phrog_298	84.5	3.4e-25	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0217424_8	UniRef90_A0A1C5T0L2	86.3	2.58e-17	PD-(D/E)XK nuclease superfamily	N/A
eggNOG-mapper	UHGV-0217424_8	1218075.BAYA01000003_gene606	77.4	0.00000000000000838	N/A	N/A
structural_annotation	UHGV-0217424_8	PF12705,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0217424_13	PF21291,TIGR03070,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0217424_14	K22300	53.5	0.0000000000000059	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0217424_14	phrog_8	45.1	0.000000000002	transcriptional regulator	transcription regulation
UniRef90	UHGV-0217424_14	UniRef90_A0A1S2GHY7	54.3	0.0000000499	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0217424_14	1118060.CAGZ01000012_gene16	51.6	0.000000496	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0217424_14	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0217424_14	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
UniRef90	UHGV-0217424_18	UniRef90_A0A3C1K3F5	68.2	0.00000000000203	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0217424_18	1329250.WOSG25_041380	49.3	0.0000073	Transcriptional regulator	N/A
COG	UHGV-0217424_18	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0217424_18	NF007257,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0217424_19	UniRef90_A0A415YMQ8	89.4	7.06e-21	PBECR3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0217424_19	585202.SMSK321_0674	68.9	0.0000000000000775	N/A	N/A
Pfam	UHGV-0217424_19	PF18812	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
KOfam	UHGV-0217424_20	K14059	94.4	1.8e-27	int; integrase	N/A
PHROG	UHGV-0217424_20	phrog_1	91.5	1.2e-26	integrase	integration and excision
UniRef90	UHGV-0217424_20	UniRef90_R6RH38	229.0	0	Prophage LambdaCh01 site-specific recombinase phage integrase family	N/A
eggNOG-mapper	UHGV-0217424_20	411468.CLOSCI_00325	206.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0217424_20	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0217424_20	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0217424_20	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0217424_21	UniRef90_A0A7M1RRU0	65.5	0.000000000477	RNA polymerase sigma factor/ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0217424_21	1408437.JNJN01000043_gene801	71.6	0.000000000000354	N/A	N/A
PHROG	UHGV-0217424_25	phrog_15863	48.7	2.6e-19	N/A	unknown function
UniRef90	UHGV-0217424_25	UniRef90_UPI00068FC51E	323.0	0	J domain-containing protein	N/A
eggNOG-mapper	UHGV-0217424_25	1519439.JPJG01000053_gene1369	323.0	0	DnaJ molecular chaperone homology domain	N/A
Pfam	UHGV-0217424_25	PF18847	N/A	N/A	Large polyvalent protein associated domain 29	LPD29
COG	UHGV-0217424_25	COG2214	N/A	N/A	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	N/A
KOfam	UHGV-0217424_26	K06909	123.0	3.1e-36	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0217424_26	phrog_979	142.9	1.49939e-43	terminase large subunit	head and packaging
UniRef90	UHGV-0217424_26	UniRef90_A0A1M5YHQ5	491.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0217424_26	693746.OBV_01690	457.0	0	phage Terminase large subunit	N/A
Pfam	UHGV-0217424_26	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0217424_26	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0217424_26	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0217424_28	phrog_156	94.6	7.5e-29	portal protein	head and packaging
eggNOG-mapper	UHGV-0217424_28	693746.OBV_01670	537.0	0	N/A	N/A
structural_annotation	UHGV-0217424_28	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0217424_30	phrog_422	123.3	1.9e-36	major head protein	head and packaging
UniRef90	UHGV-0217424_30	UniRef90_A0A8J6JH37	291.0	0	Chitobiase/beta-hexosaminidase C-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0217424_30	693746.OBV_01700	213.0	0	N/A	N/A
Pfam	UHGV-0217424_30	PF13290	N/A	N/A	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
structural_annotation	UHGV-0217424_30	PF19821,PF13287,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0217424_31	phrog_1863	66.9	1.8e-19	N/A	unknown function
eggNOG-mapper	UHGV-0217424_31	748224.HMPREF9436_01412	99.8	9.48e-27	N/A	N/A
PHROG	UHGV-0217424_32	phrog_1129	62.4	5.2e-18	holin	lysis
UniRef90	UHGV-0217424_32	UniRef90_A0A0D8J2M2	118.0	6.65e-33	Enolase	N/A
eggNOG-mapper	UHGV-0217424_32	665956.HMPREF1032_03272	116.0	8.89e-33	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0217424_32	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0217424_32	PF06946	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0217424_33	1519439.JPJG01000011_gene57	124.0	1.8e-34	N/A	N/A
structural_annotation	UHGV-0217424_33	PF11650	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0217424_34	PF16677	N/A	N/A	N/A	N/A
PHROG	UHGV-0217424_35	phrog_5107	40.0	0.000000000031	amidase	lysis
UniRef90	UHGV-0217424_35	UniRef90_A0A4D7ASB8	506.0	0	N/A	N/A
eggNOG-mapper	UHGV-0217424_35	1519439.JPJG01000011_gene54	518.0	0	N/A	N/A
structural_annotation	UHGV-0217424_35	PF11134,MF_03027,NF010237,TIGR03511,COG2319	N/A	N/A	N/A	N/A
PHROG	UHGV-0217424_36	phrog_892	59.2	1.4e-28	tail fiber protein	tail
eggNOG-mapper	UHGV-0217424_36	1408422.JHYF01000026_gene3527	86.3	8.17e-18	nuclear chromosome segregation	N/A
COG	UHGV-0217424_36	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
structural_annotation	UHGV-0217424_37	PF21253,PF07210,NF038128,TIGR03000,COG2512	N/A	N/A	N/A	N/A
PHROG	UHGV-0217424_39	phrog_20388	85.6	5.5e-25	endolysin	lysis
UniRef90	UHGV-0217424_39	UniRef90_UPI00189D4A1D	102.0	1.56e-22	phage tail tip lysozyme	N/A
eggNOG-mapper	UHGV-0217424_39	1203606.HMPREF1526_00253	103.0	2.11e-22	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0217424_39	PF18013	N/A	N/A	Phage tail lysozyme	Phage_lysozyme2
Pfam	UHGV-0217424_39	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0217424_39	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0217424_39	PF18013,PF01471,COG3409	N/A	N/A	N/A	N/A
UniRef90	UHGV-0217424_41	UniRef90_A0A810QFN4	243.0	0	LPD3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0217424_41	871968.DESME_08840	335.0	0	N/A	N/A
KOfam	UHGV-0217424_42	K07741	104.6	1.3e-30	antB; anti-repressor protein	N/A
PHROG	UHGV-0217424_42	phrog_130	229.7	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0217424_42	UniRef90_A0A359CQH6	269.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-0217424_42	431943.CKL_1910	261.0	0	Phage antirepressor protein	N/A
Pfam	UHGV-0217424_42	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0217424_42	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0217424_42	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0217424_42	PF03374,PF02498,TIGR02681,COG3617,COG3645	N/A	N/A	N/A	N/A
UniRef90	UHGV-0217424_45	UniRef90_A0A2A7B8Y1	94.4	2.41e-24	CopG family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0217424_45	1378168.N510_02331	85.5	1.31e-21	Ribbon-helix-helix protein, copG family	N/A
Pfam	UHGV-0217424_45	PF01402	N/A	N/A	Ribbon-helix-helix protein, copG family	RHH_1
structural_annotation	UHGV-0217424_45	PF01402,NF041793,COG3905	N/A	N/A	N/A	N/A
Pfam	UHGV-0217424_46	PF01402	N/A	N/A	Ribbon-helix-helix protein, copG family	RHH_1
eggNOG-mapper	UHGV-0217424_48	1121405.dsmv_2591	58.9	0.0000000112	N/A	N/A
KOfam	UHGV-0217424_49	K01520	165.4	0	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-0217424_49	phrog_135	132.8	1.7e-39	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0217424_49	UniRef90_UPI001873736C	196.0	0	dUTP diphosphatase	N/A
eggNOG-mapper	UHGV-0217424_49	1282887.AUJG01000016_gene1113	154.0	1.4013e-45	N/A	N/A
Pfam	UHGV-0217424_49	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-0217424_49	TIGR00576.1	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-0217424_49	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-0217424_49	PF00692,MF_00116,TIGR00576,COG0756	N/A	N/A	N/A	N/A
KOfam	UHGV-0217424_50	K03091	89.2	6.6e-26	sigH; RNA polymerase sporulation-specific sigma factor	N/A
UniRef90	UHGV-0217424_50	UniRef90_A0A316LD95	60.8	0.0000000205	Sigma70_r2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0217424_50	500633.CLOHIR_01562	52.4	0.0000081	Belongs to the sigma-70 factor family	N/A
Pfam	UHGV-0217424_50	PF04542	N/A	N/A	Sigma-70 region 2	Sigma70_r2
Pfam	UHGV-0217424_50	PF13936	N/A	N/A	Helix-turn-helix domain	HTH_38
NCBIFam	UHGV-0217424_50	TIGR02937.1	N/A	N/A	sigma-70 family RNA polymerase sigma factor	N/A
COG	UHGV-0217424_50	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
structural_annotation	UHGV-0217424_50	PF00196,MF_00959,NF006158,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-0217424_51	phrog_3136	142.9	8.89825e-43	N/A	unknown function
UniRef90	UHGV-0217424_51	UniRef90_UPI001C26B029	133.0	1.36e-35	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0217424_51	693746.OBV_25380	65.1	0.000000000495	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0217424_51	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0217424_51	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
UniRef90	UHGV-0217424_52	UniRef90_UPI00145A074D	92.0	4.63e-20	N/A	N/A
eggNOG-mapper	UHGV-0217424_54	749222.Nitsa_1823	81.3	0.00000000000000775	C-5 cytosine-specific DNA methylase	N/A
COG	UHGV-0217424_54	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
dbAPIS	UHGV-0217424_55	APIS008	N/A	N/A	Alphafold2 predicted that Gad2 is an enzyme with a nucleotidyltransferase protein domain, suggesting that it inhibits Gabija via a mechanism of action different than Gad1.	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0217424	Yes	39,496	52	100	1
UHGV-1602912	No	19,092	53	49	1